MGE detailed information
MGE type: Conjugative plasmid MGE length: 114575 bp
Accession: NZ_CP098196 Location: 1..114575 Organism: Escherichia coli strain Z0117EC0098 Replicon: plasmid pZ0117EC0098-1
Accession: NZ_CP098196 Location: 1..114575 Organism: Escherichia coli strain Z0117EC0098 Replicon: plasmid pZ0117EC0098-1
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NBY23_RS24480 (97) | 97..1389 | - | 1293 | WP_001417545.1 | hypothetical protein | VF |
| NBY23_RS24485 (1389) | 1389..2045 | - | 657 | WP_001193553.1 | hypothetical protein | VF |
| NBY23_RS24490 (2030) | 2030..2590 | - | 561 | WP_000014116.1 | hypothetical protein | VF |
| NBY23_RS24495 (2600) | 2600..3214 | - | 615 | WP_000959786.1 | hypothetical protein | VF |
| NBY23_RS24500 (3232) | 3232..4329 | - | 1098 | WP_001208805.1 | hypothetical protein | VF |
| NBY23_RS24505 (4342) | 4342..5895 | - | 1554 | WP_001579763.1 | hypothetical protein | VF |
| NBY23_RS24510 (5906) | 5906..6358 | - | 453 | WP_001247334.1 | hypothetical protein | VF |
| NBY23_RS24515 (6345) | 6345..7640 | - | 1296 | WP_000752772.1 | hypothetical protein | VF |
| NBY23_RS24520 (7633) | 7633..9315 | - | 1683 | WP_000748143.1 | hypothetical protein | VF |
| NBY23_RS24525 (9329) | 9329..9766 | - | 438 | WP_000539807.1 | hypothetical protein | VF |
| NBY23_RS24530 (9766) | 9766..10833 | - | 1068 | WP_001302629.1 | hypothetical protein | VF |
| NBY23_RS24535 (11457) | 11457..11753 | - | 297 | WP_000494779.1 | hypothetical protein | - |
| NBY23_RS24540 (11929) | 11929..12183 | - | 255 | WP_001136187.1 | PilI type IV pilus biogenesis protein | - |
| NBY23_RS24545 (12345) | 12345..12896 | - | 552 | WP_000744644.1 | hypothetical protein | - |
| NBY23_RS24550 (13069) | 13069..13752 | - | 684 | WP_000213859.1 | conjugal transfer protein TraC | - |
| NBY23_RS24555 (14006) | 14006..14539 | - | 534 | WP_001372168.1 | transcription termination/antitermination NusG family protein | - |
| NBY23_RS24560 (14981) | 14981..15268 | - | 288 | WP_000074855.1 | conjugal transfer protein TraA | - |
| NBY23_RS24565 (15306) | 15306..15464 | - | 159 | Protein_17 | ash family protein | - |
| NBY23_RS24570 (16422) | 16422..17453 | + | 1032 | WP_000907866.1 | plasmid replication initiator RepA | - |
| NBY23_RS24575 (18151) | 18151..18366 | + | 216 | WP_000841013.1 | hypothetical protein | - |
| NBY23_RS24580 (18363) | 18363..19355 | + | 993 | WP_001579760.1 | hypothetical protein | - |
| NBY23_RS24585 (19414) | 19414..20031 | - | 618 | WP_000521604.1 | ProQ/FINO family protein | - |
| NBY23_RS24590 (20226) | 20226..21782 | - | 1557 | WP_001579759.1 | AAA family ATPase | - |
| NBY23_RS24595 (22047) | 22047..22637 | - | 591 | WP_000194568.1 | hypothetical protein | - |
| NBY23_RS24600 (22637) | 22637..22894 | - | 258 | WP_000371888.1 | hypothetical protein | - |
| NBY23_RS24605 (23223) | 23223..24326 | + | 1104 | WP_001127573.1 | nucleotide-binding protein | - |
| NBY23_RS24610 (24356) | 24356..25486 | + | 1131 | WP_000542417.1 | DUF4238 domain-containing protein | - |
| NBY23_RS24615 (25486) | 25486..25776 | + | 291 | WP_001229373.1 | hypothetical protein | - |
| NBY23_RS24620 (26295) | 26295..27428 | + | 1134 | WP_000545983.1 | DUF3800 domain-containing protein | - |
| NBY23_RS24625 (27448) | 27448..27732 | + | 285 | WP_000642771.1 | hypothetical protein | - |
| NBY23_RS24630 (27903) | 27903..28550 | - | 648 | WP_000074712.1 | hypothetical protein | - |
| NBY23_RS24635 (28538) | 28538..28960 | - | 423 | WP_001372177.1 | hypothetical protein | - |
| NBY23_RS24640 (29053) | 29053..29634 | - | 582 | WP_000139427.1 | hypothetical protein | - |
| NBY23_RS24645 (30236) | 30236..30940 | - | 705 | WP_001067852.1 | IS6-like element IS26 family transposase | - |
| NBY23_RS24650 (31006) | 31006..31551 | + | 546 | Protein_34 | penicillin-binding transpeptidase domain-containing protein | - |
| NBY23_RS24655 (31616) | 31616..32473 | + | 858 | WP_012477595.1 | Beta-lactamase TEM | ARG |
| NBY23_RS24660 (32522) | 32522..33675 | - | 1154 | Protein_36 | IS3 family transposase ISAs17 | Transposase |
| NBY23_RS24665 (34070) | 34070..34726 | + | 657 | WP_001516695.1 | Pentapeptide repeat protein | ARG |
| NBY23_RS24670 (35045) | 35045..35473 | - | 429 | Protein_38 | Tn3 family transposase TnpR_ISMex22 | Transposase |
| NBY23_RS24675 (35506) | 35506..36897 | - | 1392 | WP_001493761.1 | ISKra4 family transposase ISKpn19 | Transposase |
| NBY23_RS24680 (36934) | 36934..37506 | - | 573 | WP_001493762.1 | Tn3 family transposase TnpR_ISPa40 | Transposase |
| NBY23_RS24685 (37643) | 37643..38188 | - | 546 | WP_001493763.1 | plasmid pRiA4b ORF-3 family protein | - |
| NBY23_RS24690 (38389) | 38389..38793 | + | 405 | Protein_42 | IS91 family transposase ISPps1 | Transposase |
| NBY23_RS24695 (38900) | 38900..39736 | - | 837 | WP_000480972.1 | hypothetical protein | ARG |
| NBY23_RS24700 (39736) | 39736..40539 | - | 804 | WP_001082320.1 | Aminoglycoside 3'-phosphotransferase | ARG |
| NBY23_RS24705 (40600) | 40600..41415 | - | 816 | WP_001043260.1 | Dihydropteroate synthase | ARG |
| NBY23_RS24710 (41745) | 41745..41831 | + | 87 | Protein_46 | Arm DNA-binding domain-containing protein | - |
| NBY23_RS24715 (42103) | 42103..43107 | - | 1005 | WP_064203911.1 | IS110 family transposase IS5075 | Transposase |
| NBY23_RS24720 (43186) | 43186..44952 | - | 1767 | Protein_48 | Tn3 family transposase | - |
| NBY23_RS24725 (45004) | 45004..45708 | - | 705 | WP_001067855.1 | IS4 family transposase IS10R | Transposase |
| NBY23_RS24730 (45772) | 45772..46137 | + | 366 | Protein_50 | IS4 family transposase IS10R | Transposase |
| NBY23_RS24735 (46382) | 46382..47257 | + | 876 | WP_001617865.1 | Beta-lactamase CTX-M-97 | ARG |
| NBY23_RS24740 (47292) | 47292..48260 | + | 969 | WP_013362812.1 | IS5 family transposase IS903B | Transposase |
| NBY23_RS24745 (48317) | 48317..49414 | + | 1098 | Protein_53 | TonB-dependent receptor | - |
| NBY23_RS24750 (49678) | 49678..50382 | - | 705 | WP_001067855.1 | IS6-like element IS26 family transposase | - |
| NBY23_RS24755 (50407) | 50407..50733 | + | 327 | WP_085654794.1 | hypothetical protein | - |
| NBY23_RS24760 (50801) | 50801..51583 | + | 783 | WP_001372173.1 | site-specific integrase | - |
| NBY23_RS24765 (51721) | 51721..51996 | - | 276 | WP_000239529.1 | hypothetical protein | - |
| NBY23_RS24770 (51990) | 51990..52634 | - | 645 | WP_000633913.1 | division plane positioning ATPase MipZ | - |
| NBY23_RS24775 (52863) | 52863..53834 | + | 972 | WP_001103690.1 | plasmid segregation protein ParM | - |
| NBY23_RS24780 (53839) | 53839..54231 | + | 393 | WP_000340829.1 | plasmid partitioning/stability family protein | - |
| NBY23_RS24785 (54236) | 54236..55507 | - | 1272 | WP_000457523.1 | Y-family DNA polymerase | - |
| NBY23_RS24790 (55507) | 55507..55944 | - | 438 | WP_000109071.1 | translesion error-prone DNA polymerase V autoproteolytic subunit | - |
| NBY23_RS24795 (55941) | 55941..56189 | - | 249 | WP_000618110.1 | DinI-like family protein | - |
| NBY23_RS24800 (56607) | 56607..57509 | + | 903 | WP_072748701.1 | DUF1281 domain-containing protein | - |
| NBY23_RS24805 (57506) | 57506..57817 | + | 312 | WP_032072582.1 | hypothetical protein | - |
| NBY23_RS24810 (57894) | 57894..58577 | + | 684 | WP_000086147.1 | DNA methylase | - |
| NBY23_RS24815 (58578) | 58578..58799 | + | 222 | WP_001104881.1 | hypothetical protein | - |
| NBY23_RS24820 (58813) | 58813..59247 | + | 435 | WP_000274500.1 | DUF1380 family protein | - |
| NBY23_RS24825 (59293) | 59293..60069 | + | 777 | WP_001005023.1 | hypothetical protein | - |
| NBY23_RS24830 (60481) | 60481..60906 | + | 426 | WP_001579750.1 | antirestriction protein | - |
| NBY23_RS24835 (60953) | 60953..61375 | + | 423 | WP_000271744.1 | DUF1380 family protein | - |
| NBY23_RS24840 (61372) | 61372..61563 | + | 192 | WP_001027495.1 | hypothetical protein | - |
| NBY23_RS24845 (61634) | 61634..61948 | + | 315 | WP_001434357.1 | hypothetical protein | - |
| NBY23_RS24850 (62332) | 62332..62859 | + | 528 | WP_001276107.1 | single-stranded DNA-binding protein | - |
| NBY23_RS24855 (62917) | 62917..63150 | + | 234 | WP_000006020.1 | DUF905 domain-containing protein | - |
| NBY23_RS24860 (63209) | 63209..65167 | + | 1959 | WP_001145485.1 | ParB/RepB/Spo0J family partition protein | - |
| NBY23_RS24865 (65222) | 65222..65656 | + | 435 | WP_001387500.1 | conjugation system SOS inhibitor PsiB | - |
| NBY23_RS24870 (65653) | 65653..66372 | + | 720 | WP_001276270.1 | plasmid SOS inhibition protein A | - |
| NBY23_RS24875 (66369) | 66369..66965 | + | 597 | Protein_79 | hypothetical protein | - |
| NBY23_RS24880 (67427) | 67427..67927 | + | 501 | WP_000117611.1 | antirestriction protein ArdA | - |
| NBY23_RS24885 (68656) | 68656..69090 | + | 435 | WP_000218863.1 | hypothetical protein | - |
| NBY23_RS24890 (69184) | 69184..69450 | + | 267 | WP_001247862.1 | hypothetical protein | - |
| NBY23_RS24895 (69515) | 69515..70441 | + | 927 | WP_000038402.1 | ISNCY family transposase ISRor2 | VF |
| NBY23_RS24900 (70464) | 70464..70661 | + | 198 | WP_001348086.1 | hypothetical protein | - |
| NBY23_RS24905 (70692) | 70692..70943 | - | 252 | WP_000148285.1 | helix-turn-helix transcriptional regulator | - |
| NBY23_RS24910 (71523) | 71523..72371 | + | 849 | WP_001077023.1 | DUF4942 domain-containing protein | - |
| NBY23_RS24915 (72457) | 72457..72792 | - | 336 | WP_000157098.1 | hypothetical protein | - |
| NBY23_RS24920 (73026) | 73026..73358 | + | 333 | WP_001283947.1 | IncI1-type relaxosome accessory protein NikA | - |
| NBY23_RS24925 (73369) | 73369..76068 | + | 2700 | WP_001405892.1 | hypothetical protein | Relaxase |
| NBY23_RS24930 (76105) | 76105..78396 | - | 2292 | WP_001289276.1 | F-type conjugative transfer protein TrbC | - |
| NBY23_RS24935 (78389) | 78389..79459 | - | 1071 | WP_000151582.1 | IncI1-type conjugal transfer protein TrbB | - |
| NBY23_RS24940 (79478) | 79478..80686 | - | 1209 | WP_000121273.1 | IncI1-type conjugal transfer protein TrbA | - |
| - (80866) | 80866..80926 | - | 61 | NuclAT_1 | - | - |
| - (80866) | 80866..80926 | - | 61 | NuclAT_1 | - | - |
| - (80866) | 80866..80926 | - | 61 | NuclAT_1 | - | - |
| - (80866) | 80866..80926 | - | 61 | NuclAT_1 | - | - |
| NBY23_RS24945 (80993) | 80993..81772 | - | 780 | WP_275450201.1 | protein FinQ | - |
| - (82287) | 82287..82349 | - | 63 | NuclAT_0 | - | Antitoxin Detail |
| - (82287) | 82287..82349 | - | 63 | NuclAT_0 | - | Antitoxin Detail |
| - (82287) | 82287..82349 | - | 63 | NuclAT_0 | - | Antitoxin Detail |
| - (82287) | 82287..82349 | - | 63 | NuclAT_0 | - | Antitoxin Detail |
| NBY23_RS24950 (82399) | 82399..82551 | + | 153 | WP_001303307.1 | Hok/Gef family protein | Toxin Detail |
| NBY23_RS24955 (82623) | 82623..82874 | - | 252 | WP_001291968.1 | hypothetical protein | - |
| - (83261) | 83261..83312 | - | 52 | NuclAT_2 | - | - |
| - (83261) | 83261..83312 | - | 52 | NuclAT_2 | - | - |
| - (83261) | 83261..83312 | - | 52 | NuclAT_2 | - | - |
| - (83261) | 83261..83312 | - | 52 | NuclAT_2 | - | - |
| NBY23_RS24960 (83863) | 83863..85032 | + | 1170 | Protein_96 | IS3 family transposase ISEc52 | Transposase |
| NBY23_RS24965 (85051) | 85051..85227 | - | 177 | WP_001054900.1 | hypothetical protein | - |
| NBY23_RS24970 (85436) | 85436..85645 | - | 210 | WP_001140545.1 | hemolysin expression modulator Hha | - |
| NBY23_RS24975 (85743) | 85743..86357 | - | 615 | WP_000578649.1 | plasmid IncI1-type surface exclusion protein ExcA | - |
| NBY23_RS24980 (86433) | 86433..88601 | - | 2169 | WP_000698355.1 | IncI1-type conjugal transfer membrane protein TraY | - |
| NBY23_RS24985 (88698) | 88698..89282 | - | 585 | WP_001037987.1 | IncI1-type conjugal transfer protein TraX | - |
| NBY23_RS24990 (89311) | 89311..90513 | - | 1203 | WP_001385654.1 | IncI1-type conjugal transfer protein TraW | - |
| NBY23_RS24995 (90480) | 90480..91094 | - | 615 | WP_000337399.1 | IncI1-type conjugal transfer protein TraV | - |
| NBY23_RS25000 (91094) | 91094..94138 | - | 3045 | WP_064203881.1 | IncI1-type conjugal transfer protein TraU | - |
| NBY23_RS25005 (94228) | 94228..95028 | - | 801 | WP_001164788.1 | IncI1-type conjugal transfer protein TraT | - |
| NBY23_RS25010 (95012) | 95012..95200 | - | 189 | WP_001277255.1 | putative conjugal transfer protein TraS | - |
| NBY23_RS25015 (95264) | 95264..95668 | - | 405 | WP_001579770.1 | hypothetical protein | - |
| NBY23_RS25020 (95719) | 95719..96246 | - | 528 | WP_001055569.1 | conjugal transfer protein TraQ | - |
| NBY23_RS25025 (96246) | 96246..96950 | - | 705 | WP_000801920.1 | IncI1-type conjugal transfer protein TraP | - |
| NBY23_RS25030 (96950) | 96950..98239 | - | 1290 | WP_001271997.1 | conjugal transfer protein TraO | - |
| NBY23_RS25035 (98242) | 98242..99225 | - | 984 | WP_001579769.1 | hypothetical protein | VF |
| NBY23_RS25040 (99236) | 99236..99928 | - | 693 | WP_000138552.1 | DotI/IcmL family type IV secretion protein | - |
| NBY23_RS25045 (99925) | 99925..100272 | - | 348 | WP_001055900.1 | conjugal transfer protein | - |
| NBY23_RS25050 (100290) | 100290..104057 | - | 3768 | WP_001579768.1 | DUF5710 domain-containing protein | - |
| NBY23_RS25055 (104147) | 104147..104698 | - | 552 | WP_000014584.1 | Phospholipase D | VF |
| NBY23_RS25060 (104713) | 104713..105003 | - | 291 | WP_001372180.1 | hypothetical protein | - |
| NBY23_RS25065 (105000) | 105000..106148 | - | 1149 | WP_001024972.1 | putative protein YggR | VF |
| NBY23_RS25070 (106145) | 106145..106963 | - | 819 | WP_000646097.1 | hypothetical protein | VF |
| NBY23_RS25075 (106960) | 106960..107418 | - | 459 | WP_001079808.1 | hypothetical protein | VF |
| NBY23_RS25080 (107813) | 107813..108190 | - | 378 | Protein_120 | lipopolysaccharide core heptose(II)-phosphate phosphatase | - |
| NBY23_RS25090 (109521) | 109521..109733 | - | 213 | Protein_122 | histidine phosphatase family protein | - |
| NBY23_RS25095 (109793) | 109793..110995 | - | 1203 | WP_000976353.1 | conjugal transfer protein TraF | - |
| NBY23_RS25100 (111081) | 111081..111905 | - | 825 | WP_001238929.1 | conjugal transfer protein TraE | - |
| NBY23_RS25105 (112056) | 112056..113210 | - | 1155 | WP_001139958.1 | site-specific integrase | - |
| NBY23_RS25110 (113209) | 113209..113562 | + | 354 | WP_001393368.1 | hypothetical protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|