MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 38919 bp
Accession: NZ_CP098187 Location: 3931812..3970730 Organism: Escherichia coli strain Z0117EC0117 Replicon: chromosome
Accession: NZ_CP098187 Location: 3931812..3970730 Organism: Escherichia coli strain Z0117EC0117 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NBY25_RS19155 (3927882) | 3927882..3928445 | + | 564 | WP_000573321.1 | PTS glucitol/sorbitol transporter subunit IIC | - |
| NBY25_RS19160 (3928442) | 3928442..3929401 | + | 960 | WP_001535517.1 | PTS glucitol/sorbitol transporter subunit IIB | - |
| NBY25_RS19165 (3929412) | 3929412..3929783 | + | 372 | WP_000216207.1 | PTS glucitol/sorbitol transporter subunit IIA | - |
| NBY25_RS19170 (3929787) | 3929787..3930566 | + | 780 | WP_001077354.1 | sorbitol-6-phosphate dehydrogenase | - |
| NBY25_RS19175 (3930672) | 3930672..3931031 | + | 360 | WP_000252912.1 | transcriptional regulator GutM | - |
| NBY25_RS19180 (3931098) | 3931098..3931871 | + | 774 | WP_000804544.1 | glucitol operon DNA-binding transcriptional repressor SrlR | - |
| NBY25_RS19185 (3931864) | 3931864..3932829 | + | 966 | WP_001287423.1 | Arabinose 5-phosphate isomerase GutQ | VF |
| NBY25_RS19190 (3932826) | 3932826..3934340 | - | 1515 | WP_000010760.1 | Anaerobic nitric oxide reductase transcription regulator NorR | VF |
| NBY25_RS19195 (3934527) | 3934527..3935966 | + | 1440 | WP_000029647.1 | anaerobic nitric oxide reductase flavorubredoxin | - |
| NBY25_RS19200 (3935963) | 3935963..3937096 | + | 1134 | WP_000064713.1 | NADH:flavorubredoxin reductase NorW | - |
| NBY25_RS19205 (3937320) | 3937320..3939572 | - | 2253 | WP_001535518.1 | carbamoyltransferase HypF | - |
| NBY25_RS19210 (3939725) | 3939725..3940252 | - | 528 | WP_001078777.1 | electron transport protein HydN | - |
| NBY25_RS19215 (3940637) | 3940637..3941065 | + | 429 | WP_000536066.1 | DUF4259 domain-containing protein | - |
| NBY25_RS19220 (3941157) | 3941157..3941576 | - | 420 | WP_000126304.1 | helix-turn-helix domain-containing protein | Antitoxin Detail |
| NBY25_RS19225 (3941573) | 3941573..3941884 | - | 312 | WP_000547563.1 | type II toxin-antitoxin system HigB family toxin | Toxin Detail |
| NBY25_RS19230 (3942047) | 3942047..3942802 | - | 756 | WP_001314074.1 | hypothetical protein | - |
| NBY25_RS19235 (3942845) | 3942845..3943312 | - | 468 | WP_000132955.1 | hydrogenase maturation peptidase HycI | - |
| NBY25_RS19240 (3943305) | 3943305..3943715 | - | 411 | WP_001291918.1 | formate hydrogenlyase assembly protein HycH | - |
| NBY25_RS19245 (3943712) | 3943712..3944479 | - | 768 | WP_000067399.1 | formate hydrogenlyase subunit HycG | - |
| NBY25_RS19250 (3944479) | 3944479..3945021 | - | 543 | WP_000493800.1 | formate hydrogenlyase subunit HycF | - |
| NBY25_RS19255 (3945031) | 3945031..3946740 | - | 1710 | WP_001288123.1 | formate hydrogenlyase subunit HycE | - |
| NBY25_RS19260 (3946758) | 3946758..3947681 | - | 924 | WP_000115226.1 | formate hydrogenlyase subunit HycD | - |
| NBY25_RS19265 (3947684) | 3947684..3949510 | - | 1827 | WP_001274429.1 | formate hydrogenlyase subunit 3 | - |
| NBY25_RS19270 (3949507) | 3949507..3950118 | - | 612 | WP_001079173.1 | formate hydrogenlyase subunit HycB | - |
| NBY25_RS19275 (3950243) | 3950243..3950704 | - | 462 | WP_000158056.1 | formate hydrogenlyase regulator HycA | - |
| NBY25_RS19280 (3950916) | 3950916..3951266 | + | 351 | WP_001299100.1 | hydrogenase maturation nickel metallochaperone HypA | - |
| NBY25_RS19285 (3951270) | 3951270..3952142 | + | 873 | WP_000337654.1 | hydrogenase nickel incorporation protein HypB | - |
| NBY25_RS19290 (3952133) | 3952133..3952405 | + | 273 | WP_000334881.1 | hydrogenase 3 maturation protein HypC | - |
| NBY25_RS19295 (3952405) | 3952405..3953526 | + | 1122 | WP_001212967.1 | hydrogenase formation protein HypD | - |
| NBY25_RS19300 (3953523) | 3953523..3954533 | + | 1011 | WP_001059916.1 | hydrogenase maturation carbamoyl dehydratase HypE | - |
| NBY25_RS19305 (3954607) | 3954607..3956685 | + | 2079 | WP_000122674.1 | Formate hydrogenlyase transcriptional activator FhlA | VF |
| NBY25_RS19310 (3956730) | 3956730..3957158 | + | 429 | WP_000301062.1 | TOBE domain-containing protein | - |
| NBY25_RS19315 (3957197) | 3957197..3957541 | - | 345 | WP_000015482.1 | nitrous oxide-stimulated promoter family protein | - |
| NBY25_RS19320 (3958613) | 3958613..3960421 | - | 1809 | WP_000710784.1 | DUF4209 domain-containing protein | - |
| NBY25_RS19325 (3960683) | 3960683..3961120 | + | 438 | WP_001536247.1 | hypothetical protein | - |
| NBY25_RS19330 (3961089) | 3961089..3962288 | + | 1200 | WP_001536248.1 | relaxase/mobilization nuclease domain-containing protein | - |
| NBY25_RS19335 (3962468) | 3962468..3962740 | + | 273 | WP_000043831.1 | hypothetical protein | - |
| NBY25_RS19340 (3962873) | 3962873..3963298 | - | 426 | WP_000336170.1 | hypothetical protein | - |
| NBY25_RS19345 (3964210) | 3964210..3964725 | + | 516 | WP_000611155.1 | helix-turn-helix domain-containing protein | - |
| NBY25_RS19350 (3964850) | 3964850..3965833 | - | 984 | WP_000020904.1 | hypothetical protein | - |
| NBY25_RS19355 (3965993) | 3965993..3966577 | - | 585 | WP_001272879.1 | hypothetical protein | - |
| NBY25_RS19360 (3966589) | 3966589..3968046 | - | 1458 | WP_000784515.1 | hypothetical protein ; Integrase | Integrase |
| NBY25_RS19365 (3968193) | 3968193..3970760 | + | 2568 | WP_001467843.1 | DNA mismatch repair protein MutS | - |
| NBY25_RS19370 (3970866) | 3970866..3971522 | + | 657 | WP_001141304.1 | protein-serine/threonine phosphatase | - |
| NBY25_RS19375 (3971573) | 3971573..3972340 | - | 768 | WP_001298167.1 | DNA-binding transcriptional repressor YgbI | - |
| NBY25_RS19380 (3972536) | 3972536..3973444 | + | 909 | WP_000847998.1 | NAD(P)-dependent oxidoreductase | - |
| NBY25_RS19385 (3973441) | 3973441..3974703 | + | 1263 | WP_000590416.1 | four-carbon acid sugar kinase family protein | - |
| NBY25_RS19390 (3974700) | 3974700..3975338 | + | 639 | WP_001278992.1 | aldolase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|