MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 52058 bp
Accession: NZ_CP098182 Location: 1..52058 Organism: Escherichia coli strain Z0117EC0148 Replicon: plasmid pZ0117EC0148-4
Accession: NZ_CP098182 Location: 1..52058 Organism: Escherichia coli strain Z0117EC0148 Replicon: plasmid pZ0117EC0148-4
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NBY28_RS25115 (NBY28_25115) | 323..904 | + | 582 | WP_000763347.1 | phage tail protein I | - |
| NBY28_RS25120 (NBY28_25120) | 956..3295 | + | 2340 | WP_215463644.1 | tail fiber protein | - |
| NBY28_RS25125 (NBY28_25125) | 3299..3826 | + | 528 | WP_001164118.1 | tail fiber assembly protein | - |
| NBY28_RS25130 (NBY28_25130) | 3855..4388 | - | 534 | WP_139581706.1 | tail fiber assembly protein | - |
| NBY28_RS25135 (NBY28_25135) | 4391..5023 | - | 633 | WP_149494434.1 | phage tail protein | - |
| NBY28_RS25140 (NBY28_25140) | 5077..5682 | - | 606 | WP_000509965.1 | Tn3 family transposase TnpR_Tn5403 | Transposase |
| NBY28_RS25145 (NBY28_25145) | 5777..8674 | + | 2898 | WP_001553819.1 | Tn3 family transposase TnpA_Tn5403 | Transposase |
| NBY28_RS25150 (NBY28_25150) | 8690..9013 | - | 324 | WP_250844260.1 | hypothetical protein | - |
| NBY28_RS25155 (NBY28_25155) | 9095..9649 | + | 555 | WP_033561046.1 | Tn3 family transposase TnpR_TnShfr1 | Transposase |
| NBY28_RS25160 (NBY28_25160) | 9831..10808 | + | 978 | WP_224922639.1 | plasmid replication initiator RepA | - |
| NBY28_RS25165 (NBY28_25165) | 11452..11739 | + | 288 | WP_000356589.1 | hypothetical protein | - |
| NBY28_RS25170 (NBY28_25170) | 11763..12026 | + | 264 | WP_000424604.1 | hypothetical protein | - |
| NBY28_RS25175 (NBY28_25175) | 12270..12617 | + | 348 | WP_000269912.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| NBY28_RS25180 (NBY28_25180) | 12617..12916 | + | 300 | WP_001259436.1 | XRE family transcriptional regulator | Antitoxin Detail |
| NBY28_RS25185 (NBY28_25185) | 13079..13459 | + | 381 | WP_111982070.1 | hypothetical protein | - |
| NBY28_RS25190 (NBY28_25190) | 13523..13795 | + | 273 | WP_000148348.1 | helix-turn-helix domain-containing protein | - |
| NBY28_RS25195 (NBY28_25200) | 14605..15747 | - | 1143 | WP_089592802.1 | ORF6N domain-containing protein | - |
| NBY28_RS25200 (NBY28_25205) | 15744..15935 | - | 192 | WP_089592803.1 | hypothetical protein | - |
| NBY28_RS25210 (NBY28_25215) | 16385..16978 | + | 594 | WP_250844261.1 | helix-turn-helix domain-containing protein | - |
| NBY28_RS25215 (NBY28_25220) | 17730..17978 | - | 249 | WP_000730008.1 | hypothetical protein | - |
| NBY28_RS25220 (NBY28_25225) | 18022..18675 | - | 654 | WP_000156167.1 | ParA family protein | - |
| NBY28_RS25225 (NBY28_25230) | 18826..19200 | - | 375 | WP_000418974.1 | hypothetical protein | - |
| NBY28_RS25230 (NBY28_25235) | 19293..19955 | - | 663 | WP_089570211.1 | helix-turn-helix domain-containing protein | - |
| NBY28_RS25235 (NBY28_25240) | 20130..20624 | + | 495 | WP_047661131.1 | hypothetical protein | - |
| NBY28_RS25240 (NBY28_25245) | 20621..21136 | + | 516 | WP_001406392.1 | hypothetical protein | - |
| NBY28_RS25245 (NBY28_25250) | 21133..21366 | + | 234 | WP_000100624.1 | hypothetical protein | - |
| NBY28_RS25250 (NBY28_25255) | 21366..21770 | + | 405 | WP_001014473.1 | Ref family recombination enhancement nuclease | - |
| NBY28_RS25255 (NBY28_25260) | 21767..22099 | + | 333 | WP_001270825.1 | DUF1064 domain-containing protein | - |
| NBY28_RS25260 (NBY28_25265) | 22103..22480 | + | 378 | WP_001250512.1 | hypothetical protein | - |
| NBY28_RS25265 (NBY28_25270) | 22650..23717 | + | 1068 | WP_033561042.1 | DUF3560 domain-containing protein | - |
| NBY28_RS25270 (NBY28_25275) | 23795..24076 | + | 282 | WP_000823235.1 | hypothetical protein | - |
| NBY28_RS25275 (NBY28_25280) | 24073..24438 | + | 366 | WP_047661071.1 | hypothetical protein | - |
| NBY28_RS25280 (NBY28_25285) | 24444..25064 | + | 621 | WP_047661076.1 | phage family protein | - |
| NBY28_RS25285 (NBY28_25290) | 25057..25314 | + | 258 | WP_001521427.1 | hypothetical protein | - |
| NBY28_RS25290 (NBY28_25295) | 25301..25489 | + | 189 | WP_000797276.1 | hypothetical protein | - |
| NBY28_RS25295 (NBY28_25300) | 25491..25700 | + | 210 | WP_000951712.1 | hypothetical protein | - |
| NBY28_RS25300 (NBY28_25305) | 25697..25987 | + | 291 | Protein_37 | hypothetical protein | - |
| NBY28_RS25305 (NBY28_25310) | 26527..26922 | + | 396 | WP_001271967.1 | phage holin family protein | - |
| NBY28_RS25310 (NBY28_25315) | 26909..27205 | + | 297 | WP_000254764.1 | phage holin family protein | - |
| NBY28_RS25315 (NBY28_25320) | 27189..27734 | + | 546 | WP_024188806.1 | putative peptidoglycan-binding domain-containing protein | - |
| NBY28_RS25320 (NBY28_25325) | 27731..28009 | + | 279 | WP_000147212.1 | hypothetical protein | - |
| NBY28_RS25330 (NBY28_25335) | 28687..29274 | + | 588 | WP_023278667.1 | MT-A70 family methyltransferase | - |
| NBY28_RS25335 (NBY28_25340) | 29387..29608 | + | 222 | WP_242924263.1 | hypothetical protein | - |
| NBY28_RS25340 (NBY28_25345) | 29683..30138 | + | 456 | WP_025667976.1 | hypothetical protein | - |
| NBY28_RS25345 (NBY28_25350) | 30344..30496 | + | 153 | WP_172906167.1 | hypothetical protein | - |
| NBY28_RS25350 (NBY28_25355) | 30583..30990 | + | 408 | WP_047661068.1 | DUF2513 domain-containing protein | - |
| NBY28_RS25355 (NBY28_25360) | 31283..31906 | + | 624 | WP_000160645.1 | ParB/Srx family N-terminal domain-containing protein | - |
| NBY28_RS25360 (NBY28_25365) | 31906..33279 | + | 1374 | WP_047661067.1 | ParB N-terminal domain-containing protein | - |
| NBY28_RS25365 (NBY28_25370) | 33296..34015 | + | 720 | WP_000775053.1 | hypothetical protein | - |
| NBY28_RS25370 (NBY28_25375) | 34573..35163 | + | 591 | WP_001185428.1 | ParB/Srx family N-terminal domain-containing protein | - |
| NBY28_RS25375 (NBY28_25380) | 35163..35714 | + | 552 | WP_001019009.1 | hypothetical protein | - |
| NBY28_RS25380 (NBY28_25385) | 35720..37576 | + | 1857 | WP_001406385.1 | phage terminase large subunit family protein | - |
| NBY28_RS25385 (NBY28_25390) | 37588..37827 | + | 240 | WP_001058287.1 | DUF6148 family protein | - |
| NBY28_RS25390 (NBY28_25395) | 37824..39398 | + | 1575 | WP_074561941.1 | phage portal protein | - |
| NBY28_RS25395 (NBY28_25400) | 39388..40455 | + | 1068 | WP_089586991.1 | ATP-dependent Clp protease proteolytic subunit | VF |
| NBY28_RS25400 (NBY28_25405) | 40465..40848 | + | 384 | WP_001209256.1 | hypothetical protein | - |
| NBY28_RS25405 (NBY28_25410) | 40869..41912 | + | 1044 | WP_001523065.1 | major capsid protein | - |
| NBY28_RS25410 (NBY28_25415) | 41913..42305 | + | 393 | WP_000113177.1 | hypothetical protein | - |
| NBY28_RS25415 (NBY28_25420) | 42305..42649 | + | 345 | WP_001083980.1 | hypothetical protein | - |
| NBY28_RS25420 (NBY28_25425) | 42646..43131 | + | 486 | WP_000609134.1 | hypothetical protein | - |
| NBY28_RS25425 (NBY28_25430) | 43132..43422 | + | 291 | WP_001284547.1 | hypothetical protein | - |
| NBY28_RS25430 (NBY28_25435) | 43422..44885 | + | 1464 | WP_000542268.1 | phage tail protein | - |
| NBY28_RS25435 (NBY28_25440) | 44902..45423 | + | 522 | WP_000070729.1 | phage major tail tube protein | - |
| NBY28_RS25440 (NBY28_25445) | 45433..45714 | + | 282 | WP_000450805.1 | phage tail assembly protein | - |
| NBY28_RS25445 (NBY28_25450) | 45869..48661 | + | 2793 | WP_000157873.1 | phage tail tape measure protein | - |
| NBY28_RS25450 (NBY28_25455) | 48862..49863 | + | 1002 | WP_139581704.1 | contractile injection system protein, VgrG/Pvc8 family | - |
| NBY28_RS25455 (NBY28_25460) | 49866..50486 | + | 621 | WP_000998644.1 | phage baseplate assembly protein V | - |
| NBY28_RS25460 (NBY28_25465) | 50483..50950 | + | 468 | WP_000635200.1 | phage tail protein | - |
| NBY28_RS25465 (NBY28_25470) | 50947..51267 | + | 321 | WP_001406393.1 | hypothetical protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|