MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 45031 bp
Accession: NZ_CP097896 Location: 3619532..3664562 Organism: Pectobacterium actinidiae strain GX-Pa1 Replicon: chromosome
Accession: NZ_CP097896 Location: 3619532..3664562 Organism: Pectobacterium actinidiae strain GX-Pa1 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| M9782_RS15835 (M9782_15840) | 3615107..3615331 | + | 225 | WP_010279363.1 | DUF2594 family protein | - |
| M9782_RS15840 (M9782_15845) | 3615425..3615712 | - | 288 | WP_039359947.1 | hypothetical protein | - |
| M9782_RS15850 (M9782_15855) | 3616580..3617992 | + | 1413 | WP_039359949.1 | D-serine/D-alanine/glycine transporter | - |
| M9782_RS15855 (M9782_15860) | 3618163..3618429 | - | 267 | WP_275070806.1 | anti-adapter protein IraP | - |
| M9782_RS15860 (M9782_15865) | 3618823..3619092 | - | 270 | Protein_3100 | LysR family transcriptional regulator | - |
| M9782_RS15870 (M9782_15875) | 3619709..3620962 | + | 1254 | WP_275070807.1 | Prophage integrase IntS ; Integrase | Integrase |
| M9782_RS15875 (M9782_15880) | 3621049..3621426 | + | 378 | Protein_3102 | transposase | - |
| M9782_RS15880 (M9782_15885) | 3622029..3623417 | - | 1389 | WP_275072414.1 | Adaptive-response sensory-kinase SasA | VF |
| M9782_RS15885 (M9782_15890) | 3623417..3624094 | - | 678 | WP_275070808.1 | Swarming motility regulation protein RssB | VF |
| M9782_RS15890 (M9782_15895) | 3624300..3625136 | + | 837 | WP_048284516.1 | MipA/OmpV family protein | - |
| M9782_RS15895 (M9782_15900) | 3625601..3626513 | + | 913 | Protein_3106 | hypothetical protein | - |
| M9782_RS15900 (M9782_15905) | 3626666..3626860 | + | 195 | WP_039309835.1 | AlpA family transcriptional regulator | - |
| M9782_RS15905 (M9782_15910) | 3626877..3627461 | + | 585 | WP_275070809.1 | DUF2857 domain-containing protein | - |
| M9782_RS15910 (M9782_15915) | 3627451..3627660 | + | 210 | WP_039480092.1 | TraR/DksA family transcriptional regulator | - |
| M9782_RS15915 (M9782_15920) | 3628217..3630247 | - | 2031 | WP_275070810.1 | hypothetical protein | - |
| M9782_RS15920 (M9782_15925) | 3630249..3630716 | - | 468 | WP_275070811.1 | serine/threonine protein kinase | - |
| M9782_RS15925 (M9782_15930) | 3630728..3631636 | - | 909 | WP_275070812.1 | hypothetical protein | - |
| M9782_RS15930 (M9782_15935) | 3632460..3632681 | + | 222 | WP_275070813.1 | hypothetical protein | - |
| M9782_RS15935 (M9782_15940) | 3632762..3633427 | + | 666 | WP_275070814.1 | hypothetical protein | VF |
| M9782_RS15940 (M9782_15945) | 3633424..3633705 | + | 282 | WP_107332632.1 | TrbC/VirB2 family protein | - |
| M9782_RS15945 (M9782_15950) | 3633715..3636462 | + | 2748 | WP_275070815.1 | Type IV secretion system protein virB4 | VF |
| M9782_RS15950 (M9782_15955) | 3636486..3637202 | + | 717 | WP_275070816.1 | type IV secretion system protein | - |
| M9782_RS15955 (M9782_15960) | 3637213..3637437 | + | 225 | WP_275070817.1 | EexN family lipoprotein | - |
| M9782_RS15960 (M9782_15965) | 3637449..3638489 | + | 1041 | WP_275070818.1 | type IV secretion system protein | - |
| M9782_RS15965 (M9782_15970) | 3638577..3638717 | + | 141 | WP_181847862.1 | hypothetical protein | - |
| M9782_RS15970 (M9782_15975) | 3638710..3639393 | + | 684 | WP_275070819.1 | Type IV secretion system protein PtlE | VF |
| M9782_RS15975 (M9782_15980) | 3639390..3640283 | + | 894 | WP_275070820.1 | P-type conjugative transfer protein VirB9 | - |
| M9782_RS15980 (M9782_15985) | 3640280..3641512 | + | 1233 | WP_275070821.1 | hypothetical protein | VF |
| M9782_RS15985 (M9782_15990) | 3641502..3642518 | + | 1017 | WP_275070822.1 | Type IV secretion system protein VirB11 | VF |
| M9782_RS15990 (M9782_15995) | 3642562..3642864 | + | 303 | WP_275070823.1 | conjugal transfer protein | - |
| M9782_RS15995 (M9782_16000) | 3643661..3645397 | + | 1737 | WP_275070824.1 | type IV secretory system conjugative DNA transfer family protein | - |
| M9782_RS16000 (M9782_16005) | 3645406..3646158 | + | 753 | WP_275070825.1 | MobC family replication-relaxation protein | - |
| M9782_RS16005 (M9782_16010) | 3646192..3646506 | - | 315 | WP_039360030.1 | CcdB family protein | Toxin Detail |
| M9782_RS16010 (M9782_16015) | 3646509..3646745 | - | 237 | WP_039360032.1 | type II toxin-antitoxin system CcdA family antitoxin | Antitoxin Detail |
| M9782_RS16015 (M9782_16020) | 3647073..3647990 | - | 918 | WP_275070826.1 | zincin-like metallopeptidase domain-containing protein | - |
| M9782_RS16020 (M9782_16025) | 3648602..3648829 | - | 228 | WP_039360037.1 | hypothetical protein | - |
| M9782_RS16025 (M9782_16030) | 3649155..3649373 | - | 219 | WP_151242679.1 | cold shock domain-containing protein | - |
| M9782_RS16030 (M9782_16035) | 3649656..3649868 | + | 213 | WP_151242680.1 | cold shock-like protein CspF | - |
| M9782_RS16035 (M9782_16040) | 3649950..3650108 | + | 159 | WP_222431663.1 | YnfU family zinc-binding protein | - |
| M9782_RS16040 (M9782_16045) | 3650266..3658848 | + | 8583 | WP_275070827.1 | Cyclic beta-(1,2)-glucan synthase NdvB | VF |
| M9782_RS16045 (M9782_16050) | 3658868..3659101 | - | 234 | WP_004132711.1 | hypothetical protein | - |
| M9782_RS16050 (M9782_16055) | 3659518..3659727 | - | 210 | WP_275070828.1 | hypothetical protein | - |
| M9782_RS16055 (M9782_16060) | 3659778..3660686 | + | 909 | WP_039360053.1 | Lipid A biosynthesis palmitoleoyltransferase | VF |
| M9782_RS16060 (M9782_16065) | 3661095..3662015 | - | 921 | WP_275070829.1 | HTH-type transcriptional regulator PgrR | VF |
| M9782_RS16065 (M9782_16070) | 3662177..3663165 | + | 989 | Protein_3140 | aldo/keto reductase | - |
| M9782_RS16070 (M9782_16075) | 3663191..3663502 | + | 312 | WP_275070830.1 | aldo/keto reductase | - |
| M9782_RS16075 (M9782_16080) | 3665059..3665862 | + | 804 | WP_275070831.1 | efflux RND transporter periplasmic adaptor subunit | - |
| M9782_RS16080 (M9782_16085) | 3665859..3667193 | + | 1335 | WP_275070832.1 | HlyD family efflux transporter periplasmic adaptor subunit | - |
| M9782_RS16085 (M9782_16090) | 3667190..3669295 | + | 2106 | WP_275070833.1 | HlyD family efflux transporter periplasmic adaptor subunit | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|