MGE detailed information
MGE type: Prophage MGE length: 106703 bp
Accession: NZ_CP097840 Location: 4016148..4122850 Organism: Shigella flexneri strain A Replicon: chromosome
Accession: NZ_CP097840 Location: 4016148..4122850 Organism: Shigella flexneri strain A Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| M9382_RS20030 (4012458) | 4012458..4013135 | - | 678 | WP_000044868.1 | dethiobiotin synthase | - |
| M9382_RS20035 (4013128) | 4013128..4013883 | - | 756 | WP_000246759.1 | malonyl-ACP O-methyltransferase BioC | - |
| M9382_RS20040 (4013870) | 4013870..4015024 | - | 1155 | WP_000118810.1 | 8-amino-7-oxononanoate synthase | - |
| M9382_RS20045 (4015021) | 4015021..4016061 | - | 1041 | WP_000951226.1 | biotin synthase BioB | - |
| M9382_RS20050 (4016148) | 4016148..4017437 | + | 1290 | WP_005048541.1 | Adenosylmethionine-8-amino-7-oxononanoate aminotransferase | VF |
| M9382_RS20055 (4017496) | 4017496..4017972 | + | 477 | WP_000767391.1 | kinase inhibitor | - |
| M9382_RS20060 (4018287) | 4018287..4018367 | + | 81 | Protein_3913 | hypothetical protein | - |
| M9382_RS20065 (4018377) | 4018377..4018463 | - | 87 | Protein_3914 | transposase | - |
| M9382_RS20070 (4018555) | 4018555..4020318 | + | 1764 | WP_000801162.1 | putative E3 ubiquitin-protein ligase ipaH4.5 | VF |
| M9382_RS20080 (4020498) | 4020498..4021121 | - | 624 | WP_000930145.1 | DUF4376 domain-containing protein | - |
| M9382_RS20085 (4021072) | 4021072..4022487 | - | 1416 | WP_000268794.1 | prophage tail fiber N-terminal domain-containing protein | - |
| M9382_RS20090 (4022551) | 4022551..4023150 | - | 600 | WP_001230368.1 | Outer membrane protein X | VF |
| M9382_RS20095 (4023218) | 4023218..4026698 | - | 3481 | Protein_3919 | host specificity protein J | - |
| M9382_RS20100 (4026759) | 4026759..4027334 | - | 576 | WP_005105520.1 | tail assembly protein | - |
| M9382_RS20105 (4027298) | 4027298..4028041 | - | 744 | WP_000194737.1 | C40 family peptidase | - |
| M9382_RS20110 (4028046) | 4028046..4028744 | - | 699 | WP_001152490.1 | phage minor tail protein L | - |
| M9382_RS20115 (4028744) | 4028744..4029073 | - | 330 | WP_000447264.1 | phage tail protein | - |
| M9382_RS20120 (4029073) | 4029073..4031811 | - | 2739 | WP_039064761.1 | phage tail tape measure protein | - |
| M9382_RS20125 (4031783) | 4031783..4032112 | - | 330 | WP_001161004.1 | phage tail assembly protein T | - |
| M9382_RS20130 (4032121) | 4032121..4032507 | - | 387 | WP_000478927.1 | phage minor tail protein G | - |
| M9382_RS20135 (4032566) | 4032566..4033306 | - | 741 | WP_000211126.1 | phage tail tube protein | - |
| M9382_RS20140 (4033317) | 4033317..4033718 | - | 402 | WP_001079406.1 | phage minor tail U family protein | - |
| M9382_RS20145 (4033715) | 4033715..4034299 | - | 585 | WP_000677140.1 | phage tail protein | - |
| M9382_RS20150 (4034286) | 4034286..4034663 | - | 378 | WP_000348593.1 | head-tail joining protein | - |
| M9382_RS20155 (4034675) | 4034675..4035061 | - | 387 | WP_000201488.1 | DNA-packaging protein FI | - |
| M9382_RS20160 (4035113) | 4035113..4036141 | - | 1029 | WP_000522637.1 | major capsid protein | - |
| M9382_RS20165 (4036199) | 4036199..4036546 | - | 348 | WP_000256830.1 | head decoration protein | - |
| M9382_RS20170 (4036583) | 4036583..4038088 | - | 1506 | WP_001254016.1 | S49 family peptidase | - |
| M9382_RS20175 (4038078) | 4038078..4039671 | - | 1594 | Protein_3935 | phage portal protein | - |
| M9382_RS20180 (4039668) | 4039668..4039871 | - | 204 | WP_000259004.1 | gpW family head-tail joining protein | - |
| M9382_RS20185 (4039855) | 4039855..4041783 | - | 1929 | WP_001026848.1 | phage terminase large subunit family protein | - |
| M9382_RS20190 (4041755) | 4041755..4042063 | - | 309 | Protein_3938 | terminase small subunit | - |
| M9382_RS20195 (4042106) | 4042106..4043145 | - | 1040 | Protein_3939 | IS3 family transposase IS600 | Transposase |
| M9382_RS20200 (4043201) | 4043201..4044410 | + | 1210 | Protein_3940 | IS3 family transposase IS629 | Transposase |
| M9382_RS20205 (4044462) | 4044462..4045468 | + | 1007 | Protein_3941 | IS3 family transposase ISSfl10 | Transposase |
| M9382_RS20210 (4045512) | 4045512..4045691 | - | 180 | Protein_3942 | Rha family transcriptional regulator | - |
| M9382_RS20215 (4045894) | 4045894..4046361 | - | 468 | WP_000092287.1 | lysis protein | - |
| M9382_RS20220 (4046358) | 4046358..4046891 | - | 534 | WP_001274722.1 | lysozyme | - |
| M9382_RS20225 (4046957) | 4046957..4047586 | - | 630 | WP_005094817.1 | hypothetical protein | - |
| M9382_RS20230 (4047590) | 4047590..4047805 | - | 216 | WP_000839566.1 | class II holin family protein | - |
| M9382_RS20255 (4048608) | 4048608..4048988 | - | 381 | WP_001204832.1 | antiterminator Q family protein | - |
| M9382_RS20260 (4048981) | 4048981..4049181 | - | 201 | WP_000111769.1 | protein ninH | - |
| M9382_RS20265 (4049276) | 4049276..4049533 | - | 258 | WP_001064799.1 | hypothetical protein | - |
| M9382_RS20270 (4049530) | 4049530..4050921 | - | 1392 | WP_000211324.1 | replicative DNA helicase | - |
| M9382_RS20275 (4050918) | 4050918..4051796 | - | 879 | WP_000988183.1 | ATP-binding protein | - |
| M9382_RS20280 (4051807) | 4051807..4052715 | - | 909 | WP_001247840.1 | hypothetical protein | - |
| M9382_RS20285 (4052702) | 4052702..4052935 | - | 234 | WP_000618004.1 | hypothetical protein | - |
| M9382_RS20290 (4052932) | 4052932..4053384 | - | 453 | WP_232046050.1 | Rha family transcriptional regulator | - |
| M9382_RS20295 (4053442) | 4053442..4053900 | - | 459 | WP_000961311.1 | ash family protein | - |
| M9382_RS20300 (4053913) | 4053913..4054143 | + | 231 | WP_005061113.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| M9382_RS20305 (4054133) | 4054133..4054441 | + | 309 | WP_000147081.1 | helix-turn-helix transcriptional regulator | Antitoxin Detail |
| M9382_RS20310 (4054483) | 4054483..4054659 | - | 177 | WP_001252556.1 | NinE family protein | - |
| M9382_RS20315 (4054656) | 4054656..4055066 | - | 411 | WP_000814621.1 | recombination protein NinB | - |
| M9382_RS20320 (4055063) | 4055063..4055341 | - | 279 | WP_005061104.1 | hypothetical protein | - |
| M9382_RS20325 (4055416) | 4055416..4055610 | - | 195 | Protein_3961 | hypothetical protein | - |
| M9382_RS20330 (4055680) | 4055680..4056848 | + | 1169 | WP_000747032.1 | IS3 family transposase ISLad1 | Transposase |
| M9382_RS20335 (4056978) | 4056978..4058107 | + | 1130 | WP_112361761.1 | IS3 family transposase ISSfl10 | Transposase |
| M9382_RS20340 (4058151) | 4058151..4058240 | - | 90 | Protein_3964 | phage holin | - |
| M9382_RS20365 (4059421) | 4059421..4059861 | - | 441 | Protein_3965 | DUF1133 family protein | - |
| M9382_RS20375 (4061117) | 4061117..4061227 | - | 111 | Protein_3967 | DUF1133 family protein | - |
| M9382_RS20380 (4061224) | 4061224..4061514 | - | 291 | WP_000228005.1 | DUF1364 domain-containing protein | - |
| M9382_RS20385 (4061514) | 4061514..4061747 | - | 234 | Protein_3969 | DUF1367 family protein | - |
| M9382_RS20390 (4061812) | 4061812..4062968 | + | 1157 | WP_094081518.1 | IS3 family transposase IS600 | Transposase |
| M9382_RS20395 (4063012) | 4063012..4063380 | - | 369 | Protein_3971 | DUF1367 family protein | - |
| M9382_RS20400 (4063419) | 4063419..4063706 | - | 288 | WP_000687442.1 | hypothetical protein | - |
| M9382_RS20405 (4063956) | 4063956..4064111 | - | 156 | WP_014532198.1 | type I toxin-antitoxin system toxin HokD | - |
| M9382_RS20410 (4064339) | 4064339..4065004 | - | 666 | WP_012421537.1 | epoxyqueuosine reductase QueH | - |
| M9382_RS20415 (4065173) | 4065173..4065529 | - | 357 | WP_005048249.1 | hypothetical protein | - |
| M9382_RS20420 (4065587) | 4065587..4066009 | - | 423 | WP_001118167.1 | DUF977 family protein | - |
| M9382_RS20425 (4066024) | 4066024..4066770 | - | 747 | Protein_3977 | ATP-binding protein | - |
| M9382_RS20430 (4066916) | 4066916..4067566 | - | 651 | WP_005107109.1 | hypothetical protein | - |
| M9382_RS20435 (4067644) | 4067644..4068066 | - | 423 | WP_000702036.1 | toxin YdaT family protein | - |
| M9382_RS20440 (4068050) | 4068050..4068277 | - | 228 | WP_000912291.1 | Cro/CI family transcriptional regulator | - |
| M9382_RS20445 (4068354) | 4068354..4068761 | + | 408 | WP_000787424.1 | helix-turn-helix domain-containing protein | - |
| M9382_RS20450 (4068964) | 4068964..4069119 | + | 156 | WP_001091985.1 | DUF1391 family protein | - |
| M9382_RS20455 (4069121) | 4069121..4069324 | + | 204 | WP_001005968.1 | hypothetical protein | - |
| M9382_RS20465 (4071342) | 4071342..4072190 | + | 849 | WP_000935590.1 | Rha family phage regulatory protein | - |
| M9382_RS20470 (4072207) | 4072207..4072488 | + | 282 | WP_001069001.1 | YdaE family protein | - |
| M9382_RS20475 (4072524) | 4072524..4072640 | + | 117 | Protein_3987 | hypothetical protein | - |
| M9382_RS20480 (4072704) | 4072704..4073833 | + | 1130 | WP_130862224.1 | IS3 family transposase ISSfl10 | Transposase |
| M9382_RS20485 (4073876) | 4073876..4074358 | - | 483 | Protein_3989 | hypothetical protein | - |
| M9382_RS20490 (4074382) | 4074382..4075550 | + | 1169 | WP_000747032.1 | IS3 family transposase ISLad1 | Transposase |
| M9382_RS20495 (4075560) | 4075560..4075754 | - | 195 | Protein_3991 | hypothetical protein | - |
| M9382_RS20500 (4075854) | 4075854..4076086 | - | 233 | Protein_3992 | hypothetical protein | - |
| M9382_RS20510 (4077319) | 4077319..4077936 | + | 618 | WP_005061679.1 | DUF4376 domain-containing protein | - |
| M9382_RS20520 (4078116) | 4078116..4079942 | - | 1827 | WP_011110560.1 | E3 ubiquitin-protein ligase ipaH3 | VF |
| M9382_RS20525 (4080433) | 4080433..4080522 | + | 90 | Protein_3996 | Tn3 family transposase TnpR_TnShfr1 | Transposase |
| M9382_RS20530 (4080824) | 4080824..4081819 | + | 996 | WP_000815445.1 | 6-phosphogluconolactonase | - |
| M9382_RS20535 (4081860) | 4081860..4082813 | - | 954 | Protein_3998 | LysR family transcriptional regulator | - |
| M9382_RS20540 (4082997) | 4082997..4084049 | + | 1053 | WP_000723619.1 | 4-oxalomesaconate tautomerase | - |
| M9382_RS20545 (4084125) | 4084125..4085558 | + | 1434 | WP_001036462.1 | anion permease | - |
| M9382_RS20550 (4085741) | 4085741..4087921 | + | 2181 | WP_000593952.1 | hydratase | - |
| M9382_RS20555 (4088062) | 4088062..4089345 | - | 1284 | WP_001091541.1 | putative acyl-CoA thioester hydrolase | - |
| M9382_RS20560 (4089480) | 4089480..4090421 | - | 942 | Protein_4003 | tyrosine-type recombinase/integrase | - |
| M9382_RS20570 (4091656) | 4091656..4091784 | + | 129 | Protein_4005 | phage holin | - |
| M9382_RS20575 (4091784) | 4091784..4091888 | + | 105 | Protein_4006 | lysozyme | - |
| M9382_RS20580 (4091961) | 4091961..4093129 | + | 1169 | WP_000747032.1 | IS3 family transposase ISLad1 | Transposase |
| M9382_RS20585 (4093135) | 4093135..4093383 | + | 249 | Protein_4008 | lysis system i-spanin subunit Rz | - |
| M9382_RS20590 (4093472) | 4093472..4093984 | - | 513 | WP_011069285.1 | VTT domain-containing protein | - |
| M9382_RS20595 (4094179) | 4094179..4094874 | + | 696 | WP_001108105.1 | hypothetical protein | - |
| M9382_RS20605 (4096121) | 4096121..4096195 | + | 75 | Protein_4012 | hypothetical protein | - |
| M9382_RS20610 (4096206) | 4096206..4096814 | + | 609 | Protein_4013 | PBSX family phage terminase large subunit | - |
| M9382_RS20615 (4096905) | 4096905..4098133 | + | 1229 | WP_094081542.1 | IS3 family transposase IS2 | Transposase |
| M9382_RS20620 (4098145) | 4098145..4098878 | + | 734 | Protein_4015 | PBSX family phage terminase large subunit | - |
| M9382_RS20625 (4098878) | 4098878..4100344 | + | 1467 | WP_000113500.1 | DUF1073 domain-containing protein | - |
| M9382_RS20630 (4100235) | 4100235..4100978 | + | 744 | WP_000184977.1 | phage minor head protein | - |
| M9382_RS20635 (4100982) | 4100982..4102202 | + | 1221 | WP_000873151.1 | DUF2213 domain-containing protein | - |
| M9382_RS20640 (4102206) | 4102206..4102695 | + | 490 | Protein_4019 | hypothetical protein | - |
| M9382_RS20645 (4102707) | 4102707..4103648 | + | 942 | WP_000627469.1 | DUF2184 domain-containing protein | - |
| M9382_RS20650 (4103645) | 4103645..4103920 | - | 276 | WP_011069283.1 | hypothetical protein | - |
| M9382_RS20660 (4105153) | 4105153..4106784 | - | 1632 | Protein_4023 | transposase domain-containing protein | - |
| M9382_RS20665 (4106759) | 4106759..4106995 | - | 237 | WP_014532185.1 | helix-turn-helix transcriptional regulator | - |
| M9382_RS20670 (4107167) | 4107167..4107676 | + | 510 | WP_000833599.1 | DNA-binding protein | - |
| M9382_RS20675 (4108014) | 4108014..4108355 | + | 342 | Protein_4026 | response regulator | - |
| M9382_RS20680 (4108396) | 4108396..4109781 | - | 1386 | WP_000955062.1 | anaerobic C4-dicarboxylate transporter DcuC | - |
| M9382_RS20685 (4110369) | 4110369..4110929 | + | 561 | WP_005049488.1 | lipid IV(A) palmitoyltransferase PagP | - |
| M9382_RS20690 (4111104) | 4111104..4111313 | + | 210 | WP_000034825.1 | transcription antiterminator/RNA stability regulator CspE | - |
| M9382_RS20695 (4111367) | 4111367..4111750 | - | 384 | WP_000939741.1 | fluoride efflux transporter CrcB | - |
| M9382_RS20700 (4111843) | 4111843..4112631 | + | 789 | WP_005049482.1 | deaminated glutathione amidase | - |
| M9382_RS20705 (4112760) | 4112760..4112963 | + | 204 | WP_000503931.1 | twin-arginine translocase subunit TatE | - |
| M9382_RS20710 (4113064) | 4113064..4114029 | - | 966 | WP_000042632.1 | lipoyl synthase | - |
| M9382_RS20715 (4114238) | 4114238..4115191 | - | 954 | WP_000378035.1 | YbeF family transcriptional regulator | - |
| M9382_RS20720 (4115450) | 4115450..4116091 | - | 642 | WP_000284045.1 | lipoyl(octanoyl) transferase LipB | - |
| M9382_RS20725 (4116192) | 4116192..4116455 | - | 264 | WP_000850550.1 | DUF493 family protein YbeD | - |
| M9382_RS20730 (4116566) | 4116566..4117777 | - | 1212 | WP_001092085.1 | D-alanyl-D-alanine carboxypeptidase DacA | - |
| M9382_RS20735 (4117916) | 4117916..4119004 | - | 1089 | WP_001231406.1 | endolytic peptidoglycan transglycosylase RlpA | - |
| M9382_RS20740 (4119015) | 4119015..4120127 | - | 1113 | WP_000131719.1 | peptidoglycan glycosyltransferase MrdB | - |
| M9382_RS20745 (4120130) | 4120130..4122031 | - | 1902 | WP_000776197.1 | peptidoglycan DD-transpeptidase MrdA | - |
| M9382_RS20750 (4122062) | 4122062..4122529 | - | 468 | WP_000776104.1 | 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH | - |
| M9382_RS20755 (4122533) | 4122533..4122850 | - | 318 | WP_001161664.1 | ribosome silencing factor | - |
| M9382_RS20760 (4123110) | 4123110..4123712 | - | 603 | WP_075332657.1 | adenosylcobalamin/alpha-ribazole phosphatase | - |
| M9382_RS20765 (4123736) | 4123736..4124377 | - | 642 | WP_000838889.1 | nicotinate-nucleotide adenylyltransferase | - |
| M9382_RS20770 (4124379) | 4124379..4125410 | - | 1032 | WP_258247919.1 | DNA polymerase III subunit delta | - |
| M9382_RS20775 (4125410) | 4125410..4125991 | - | 582 | WP_001269672.1 | LPS assembly lipoprotein LptE | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|