MGE detailed information
MGE type: Prophage MGE length: 60170 bp
Accession: NZ_CP097840 Location: 3336626..3396795 Organism: Shigella flexneri strain A Replicon: chromosome
Accession: NZ_CP097840 Location: 3336626..3396795 Organism: Shigella flexneri strain A Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| M9382_RS16490 () | 3331704..3332504 | + | 801 | WP_000406926.1 | PTS mannose transporter subunit IIC | - |
| M9382_RS16495 () | 3332517..3333368 | + | 852 | WP_001331209.1 | PTS mannose transporter subunit IID | - |
| M9382_RS16500 () | 3333423..3333899 | + | 477 | WP_000156246.1 | DUF986 family protein | - |
| M9382_RS16505 () | 3333928..3334625 | + | 698 | WP_258247963.1 | IS1 family transposase | - |
| M9382_RS16510 () | 3335088..3335654 | + | 567 | WP_005062712.1 | manganese efflux pump MntP | - |
| M9382_RS16515 () | 3335651..3336460 | - | 810 | WP_000010128.1 | 23S rRNA (guanine(745)-N(1))-methyltransferase | - |
| M9382_RS16520 () | 3336626..3336835 | - | 210 | WP_001062678.1 | transcription antiterminator/RNA stability regulator CspE | - |
| M9382_RS16525 () | 3336848..3336991 | - | 144 | WP_001295496.1 | DUF2627 domain-containing protein | - |
| M9382_RS16530 () | 3337570..3337857 | - | 288 | WP_001006860.1 | YebO family protein | - |
| M9382_RS16535 () | 3337932..3338075 | - | 144 | WP_000714550.1 | PhoP/PhoQ regulator MgrB | - |
| M9382_RS16540 () | 3338234..3338473 | + | 240 | WP_001211010.1 | YobH family protein | - |
| M9382_RS16545 () | 3338616..3339407 | - | 792 | WP_001262181.1 | DNA-binding transcriptional regulator KdgR | - |
| M9382_RS16550 () | 3339584..3340957 | + | 1374 | WP_001127218.1 | MFS transporter | - |
| M9382_RS16555 () | 3341003..3341884 | - | 882 | WP_000984517.1 | protease HtpX | - |
| M9382_RS16560 () | 3342076..3344124 | - | 2049 | WP_001055799.1 | carboxy terminal-processing peptidase | - |
| M9382_RS16565 () | 3344144..3344842 | - | 699 | WP_000431370.1 | RNA chaperone ProQ | - |
| M9382_RS16570 () | 3344939..3345436 | - | 498 | WP_001043881.1 | L-methionine (R)-S-oxide reductase | - |
| M9382_RS16575 () | 3345566..3346849 | + | 1284 | WP_001207281.1 | membrane integrity lipid transport subunit YebS | - |
| M9382_RS16580 () | 3346818..3349438 | + | 2621 | Protein_3226 | Intermembrane transport protein YebT | VF |
| M9382_RS16585 () | 3349518..3350957 | + | 1440 | WP_000057029.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| M9382_RS16590 () | 3351075..3351311 | + | 237 | WP_001295499.1 | YebV family protein | - |
| M9382_RS16595 () | 3351416..3351607 | + | 192 | WP_001296140.1 | YebW family protein | - |
| M9382_RS16600 () | 3351632..3351820 | - | 189 | Protein_3230 | serine/threonine-protein phosphatase | - |
| M9382_RS16610 () | 3353085..3353531 | - | 447 | Protein_3232 | metallophosphoesterase | - |
| M9382_RS16615 () | 3354282..3355988 | + | 1707 | WP_000936830.1 | E3 ubiquitin-protein ligase ipaH3 | VF |
| M9382_RS16620 () | 3356168..3356791 | - | 624 | WP_039064861.1 | DUF4376 domain-containing protein | - |
| M9382_RS16625 () | 3356742..3356909 | - | 168 | Protein_3235 | IS66 family transposase ISSfl3 | Transposase |
| M9382_RS16630 () | 3356911..3357291 | - | 381 | Protein_3236 | IS66 family transposase ISSfl3 | Transposase |
| M9382_RS16635 () | 3357801..3358037 | - | 237 | WP_001275006.1 | hypothetical protein | - |
| M9382_RS16640 () | 3358514..3359402 | + | 889 | Protein_3238 | Rha family transcriptional regulator | - |
| M9382_RS16645 () | 3359444..3360672 | + | 1229 | WP_134797556.1 | IS3 family transposase IS2 | Transposase |
| M9382_RS16650 () | 3360749..3360970 | + | 222 | WP_000560226.1 | killing protein KilR | - |
| M9382_RS16655 () | 3360970..3361140 | + | 171 | WP_001359121.1 | YdaE family protein | - |
| M9382_RS16660 () | 3361215..3361490 | + | 276 | WP_005049830.1 | hypothetical protein | - |
| M9382_RS16665 () | 3361590..3363005 | + | 1416 | Protein_3243 | exodeoxyribonuclease VIII | - |
| M9382_RS16675 () | 3364317..3364625 | + | 309 | WP_232046049.1 | host-nuclease inhibitor Gam family protein | - |
| M9382_RS16680 () | 3364606..3365774 | + | 1169 | WP_000747032.1 | IS3 family transposase ISLad1 | Transposase |
| M9382_RS16685 () | 3365941..3366123 | + | 183 | WP_252706320.1 | hypothetical protein | - |
| M9382_RS16690 () | 3366198..3367407 | + | 1210 | Protein_3248 | IS3 family transposase IS629 | Transposase |
| M9382_RS16695 () | 3367455..3367622 | + | 168 | WP_005049823.1 | excisionase family protein | - |
| M9382_RS16700 () | 3367624..3367794 | + | 171 | Protein_3250 | DUF3596 domain-containing protein | - |
| M9382_RS16710 () | 3368562..3369203 | + | 642 | Protein_3252 | Putative defective protein IntQ ; Integrase | Integrase |
| M9382_RS16715 () | 3369676..3370590 | + | 915 | WP_000555620.1 | putative periplasmic iron-binding protein | VF |
| M9382_RS16720 () | 3370590..3371417 | + | 828 | WP_000983722.1 | Manganese transport system ATP-binding protein MntB | VF |
| M9382_RS16725 () | 3371414..3372271 | + | 858 | WP_001101728.1 | Manganese transport system membrane protein MntB | ARG |
| M9382_RS16730 () | 3372268..3373125 | + | 858 | WP_000968134.1 | Manganese transport system membrane protein MntB | ARG |
| M9382_RS16735 () | 3373326..3373949 | - | 624 | WP_000930141.1 | DUF4376 domain-containing protein | - |
| M9382_RS16740 () | 3373900..3375089 | - | 1190 | Protein_3258 | prophage tail fiber N-terminal domain-containing protein | - |
| M9382_RS16745 () | 3375113..3375657 | - | 545 | Protein_3259 | tail fiber assembly protein | - |
| M9382_RS16750 () | 3375681..3376049 | - | 369 | WP_011069357.1 | hypothetical protein | - |
| M9382_RS16755 () | 3376077..3376982 | - | 906 | Protein_3261 | IS3 family transposase IS600 | Transposase |
| M9382_RS16765 () | 3377754..3377915 | - | 162 | Protein_3263 | Rha family transcriptional regulator | - |
| M9382_RS16770 () | 3378755..3379180 | - | 426 | Protein_3264 | hypothetical protein ; Integrase | Integrase |
| M9382_RS16775 () | 3379247..3380415 | + | 1169 | WP_000747032.1 | IS3 family transposase ISLad1 | Transposase |
| M9382_RS16800 () | 3381130..3381690 | - | 561 | WP_072075205.1 | ORF6N domain-containing protein | - |
| M9382_RS16810 () | 3382901..3383086 | - | 186 | WP_005049799.1 | hypothetical protein | - |
| M9382_RS16815 () | 3383227..3383781 | - | 555 | WP_000640143.1 | DUF1133 family protein | - |
| M9382_RS16820 () | 3383778..3384068 | - | 291 | WP_000228038.1 | DUF1364 domain-containing protein | - |
| M9382_RS16825 () | 3384068..3384667 | - | 600 | WP_000940329.1 | DUF1367 family protein | - |
| M9382_RS16830 () | 3384801..3385498 | + | 698 | WP_227804319.1 | IS1 family transposase IS1X2 | Transposase |
| M9382_RS16835 () | 3386004..3386159 | - | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | Toxin Detail |
| - | 3386171..3386229 | + | 59 | - | - | Antitoxin Detail |
| M9382_RS16840 () | 3386614..3386979 | - | 366 | WP_000610655.1 | DUF551 domain-containing protein | - |
| M9382_RS16845 () | 3386979..3387644 | - | 666 | WP_000208062.1 | hypothetical protein | - |
| M9382_RS16850 () | 3387641..3388006 | - | 366 | WP_001229298.1 | HNH endonuclease signature motif containing protein | - |
| M9382_RS16855 () | 3388008..3388226 | - | 219 | WP_000256998.1 | DUF4014 family protein | - |
| M9382_RS16860 () | 3388319..3388675 | - | 357 | WP_005048249.1 | hypothetical protein | - |
| M9382_RS16865 () | 3388733..3389155 | - | 423 | WP_001118167.1 | DUF977 family protein | - |
| M9382_RS16870 () | 3389170..3389913 | - | 744 | WP_000788999.1 | ATP-binding protein | - |
| M9382_RS16875 () | 3390059..3390228 | - | 170 | Protein_3281 | hypothetical protein | - |
| M9382_RS16880 () | 3390752..3391980 | + | 1229 | WP_134797556.1 | IS3 family transposase IS2 | Transposase |
| M9382_RS16885 () | 3391994..3392404 | - | 411 | Protein_3283 | YdaU family protein | - |
| M9382_RS16890 () | 3392508..3393664 | + | 1157 | WP_094081550.1 | IS3 family transposase IS600 | Transposase |
| M9382_RS16895 () | 3393709..3394143 | - | 435 | Protein_3285 | HTH-type transcriptional regulator PgrR | VF |
| M9382_RS16900 () | 3394281..3395201 | + | 921 | WP_000981715.1 | alpha/beta hydrolase | - |
| M9382_RS16905 () | 3395201..3396139 | + | 939 | Protein_3287 | alpha/beta hydrolase | - |
| M9382_RS16910 () | 3396157..3396795 | + | 639 | WP_005049763.1 | SDR family oxidoreductase | - |
| M9382_RS16915 () | 3397086..3397814 | + | 729 | WP_005061999.1 | murein tripeptide amidase MpaA | - |
| M9382_RS16920 () | 3397789..3398748 | - | 960 | WP_005062222.1 | L-Ala-D/L-Glu epimerase | - |
| M9382_RS16925 () | 3398867..3399373 | + | 507 | WP_000084387.1 | thiol peroxidase | - |
| M9382_RS16930 () | 3399417..3400958 | - | 1542 | WP_001306544.1 | transcriptional regulator TyrR | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|