MGE detailed information
MGE type: Prophage MGE length: 64078 bp
Accession: NZ_CP097840 Location: 2851182..2915259 Organism: Shigella flexneri strain A Replicon: chromosome
Accession: NZ_CP097840 Location: 2851182..2915259 Organism: Shigella flexneri strain A Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| M9382_RS13985 () | 2846388..2848817 | + | 2430 | WP_001229400.1 | trimethylamine N-oxide reductase TorZ | - |
| M9382_RS13990 () | 2848982..2849953 | - | 972 | WP_000564755.1 | tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB | - |
| M9382_RS13995 () | 2849950..2850693 | - | 744 | WP_000019588.1 | carboxy-S-adenosyl-L-methionine synthase CmoA | - |
| M9382_RS14000 () | 2850734..2851129 | - | 396 | WP_000252980.1 | MAPEG family protein | - |
| M9382_RS14005 () | 2851182..2851529 | - | 348 | Protein_2719 | DUF72 domain-containing protein | - |
| M9382_RS14010 () | 2851762..2852930 | + | 1169 | WP_000747032.1 | IS3 family transposase ISLad1 | Transposase |
| M9382_RS14015 () | 2852967..2853656 | + | 690 | WP_001064885.1 | hypothetical protein | VF |
| M9382_RS14040 () | 2854842..2856038 | - | 1197 | WP_258248023.1 | IS110 family transposase ISSfl4 | Transposase |
| M9382_RS14045 () | 2856302..2856703 | + | 402 | WP_001074423.1 | DNA-packaging protein FI | - |
| M9382_RS14050 () | 2856715..2857086 | + | 372 | WP_000753025.1 | head-tail joining protein | - |
| M9382_RS14055 () | 2857073..2857663 | + | 591 | WP_000677117.1 | phage tail protein | - |
| M9382_RS14060 () | 2857660..2858061 | + | 402 | WP_001079406.1 | phage minor tail U family protein | - |
| M9382_RS14065 () | 2858072..2858812 | + | 741 | WP_000211126.1 | phage tail tube protein | - |
| M9382_RS14070 () | 2858871..2859257 | + | 387 | WP_000478927.1 | phage minor tail protein G | - |
| M9382_RS14075 () | 2859266..2859595 | + | 330 | WP_001161004.1 | phage tail assembly protein T | - |
| M9382_RS14080 () | 2859567..2862305 | + | 2739 | WP_039064761.1 | phage tail tape measure protein | - |
| M9382_RS14085 () | 2862305..2862634 | + | 330 | WP_000447264.1 | phage tail protein | - |
| M9382_RS14090 () | 2862634..2863332 | + | 699 | WP_001152490.1 | phage minor tail protein L | - |
| M9382_RS14095 () | 2863337..2864080 | + | 744 | WP_000194737.1 | C40 family peptidase | - |
| M9382_RS14100 () | 2864044..2864619 | + | 576 | WP_005105520.1 | tail assembly protein | - |
| M9382_RS14105 () | 2864680..2868160 | + | 3481 | Protein_2735 | host specificity protein J | - |
| M9382_RS14110 () | 2868228..2868827 | + | 600 | WP_258248022.1 | Outer membrane protein X | VF |
| M9382_RS14115 () | 2868891..2870306 | + | 1416 | WP_000268794.1 | prophage tail fiber N-terminal domain-containing protein | - |
| M9382_RS14120 () | 2870257..2870880 | + | 624 | WP_000930145.1 | DUF4376 domain-containing protein | - |
| M9382_RS14130 () | 2871060..2872811 | - | 1752 | WP_005031414.1 | E3 ubiquitin-protein ligase ipaH9.8 | VF |
| M9382_RS14135 () | 2873412..2873660 | - | 249 | WP_001210039.1 | DinI-like family protein | - |
| M9382_RS14140 () | 2873923..2874018 | - | 96 | Protein_2741 | hypothetical protein | - |
| M9382_RS14145 () | 2874015..2874362 | - | 348 | Protein_2742 | hydrolase | - |
| M9382_RS14150 () | 2874389..2875585 | - | 1197 | WP_005062405.1 | IS110 family transposase ISSfl4 | Transposase |
| M9382_RS14155 () | 2875819..2876031 | - | 213 | Protein_2744 | isochorismatase family protein | - |
| M9382_RS14160 () | 2876341..2878113 | + | 1773 | WP_001258670.1 | aspartate--tRNA ligase | - |
| M9382_RS14165 () | 2878231..2878683 | + | 453 | WP_001300367.1 | dihydroneopterin triphosphate diphosphatase | - |
| M9382_RS14170 () | 2878712..2879452 | + | 741 | WP_258248021.1 | putative transcriptional regulatory protein YebC | VF |
| M9382_RS14175 () | 2879487..2880008 | + | 522 | WP_000974712.1 | crossover junction endodeoxyribonuclease RuvC | - |
| M9382_RS14180 () | 2880010..2880612 | - | 603 | WP_001024930.1 | YebB family permuted papain-like enzyme | - |
| M9382_RS14185 () | 2880681..2880746 | + | 66 | WP_001386853.1 | stress response small protein YobI | - |
| M9382_RS14190 () | 2880885..2881496 | + | 612 | WP_000580324.1 | Holliday junction branch migration protein RuvA | - |
| M9382_RS14195 () | 2881505..2882515 | + | 1011 | WP_000568525.1 | Holliday junction branch migration DNA helicase RuvB | - |
| M9382_RS14200 () | 2882662..2883447 | - | 786 | WP_000571470.1 | High-affinity zinc uptake system membrane protein ZnuB | VF |
| M9382_RS14205 () | 2883444..2884199 | - | 756 | WP_000202992.1 | Zinc import ATP-binding protein ZnuC | VF |
| M9382_RS14210 () | 2884278..2885210 | + | 933 | WP_001342995.1 | zinc ABC transporter substrate-binding protein ZnuA | - |
| M9382_RS14215 () | 2885226..2886548 | + | 1323 | WP_001184045.1 | murein DD-endopeptidase MepM | - |
| M9382_RS14220 () | 2886668..2887639 | + | 972 | WP_000448385.1 | Lipid A biosynthesis myristoyltransferase 1 | VF |
| M9382_RS14225 () | 2887770..2889212 | - | 1443 | WP_000044415.1 | pyruvate kinase | - |
| M9382_RS14230 () | 2889340..2890209 | - | 870 | WP_001056694.1 | DNA-binding transcriptional regulator HexR | - |
| M9382_RS14235 () | 2890546..2892021 | + | 1476 | WP_000301736.1 | glucose-6-phosphate dehydrogenase | - |
| M9382_RS14240 () | 2892256..2892873 | + | 618 | Protein_2761 | dihydroxy-acid dehydratase | - |
| M9382_RS14245 () | 2892929..2893626 | + | 698 | WP_225620329.1 | IS1 family transposase IS1X2 | Transposase |
| M9382_RS14250 () | 2893642..2894844 | + | 1203 | Protein_2763 | phosphogluconate dehydratase | - |
| M9382_RS14255 () | 2894881..2895522 | + | 642 | WP_000800512.1 | bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase | - |
| M9382_RS14260 () | 2895578..2896756 | - | 1179 | WP_000173488.1 | formate-dependent phosphoribosylglycinamide formyltransferase | - |
| M9382_RS14265 () | 2896938..2897180 | + | 243 | Protein_2766 | YebG family protein | - |
| M9382_RS14270 () | 2897247..2897603 | + | 357 | WP_005062375.1 | protein YebF | - |
| M9382_RS14275 () | 2897930..2898589 | + | 660 | WP_000024751.1 | tellurite resistance TerB family protein | - |
| M9382_RS14280 () | 2898799..2900859 | + | 2061 | WP_000936980.1 | oligopeptidase B | - |
| M9382_RS14285 () | 2900856..2901518 | - | 663 | WP_000944271.1 | exodeoxyribonuclease X | - |
| M9382_RS14290 () | 2901542..2902198 | - | 657 | Protein_2771 | carbon-nitrogen hydrolase family protein YobB | - |
| M9382_RS14295 () | 2902300..2902530 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| M9382_RS14300 () | 2902669..2903043 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| M9382_RS14305 () | 2903047..2903919 | + | 873 | Protein_2774 | copper homeostasis membrane protein CopD | - |
| M9382_RS14310 () | 2903932..2904273 | + | 342 | WP_000976476.1 | YebY family protein | - |
| - | 2904301..2904535 | - | 235 | - | - | Antitoxin Detail |
| - | 2904431..2904534 | + | 104 | - | - | Toxin Detail |
| M9382_RS14315 () | 2904666..2905742 | - | 1077 | Protein_2776 | hypothetical protein ; Integrase | Integrase |
| M9382_RS14320 () | 2905708..2905989 | - | 282 | WP_005127484.1 | excisionase | - |
| M9382_RS14325 () | 2906106..2906954 | - | 849 | Protein_2778 | IS3 family transposase ISSd1 | Transposase |
| M9382_RS14330 () | 2907009..2908218 | + | 1210 | Protein_2779 | IS3 family transposase IS629 | Transposase |
| M9382_RS14335 () | 2908261..2908571 | - | 311 | Protein_2780 | IS3 family transposase ISSfl10 | Transposase |
| M9382_RS14340 () | 2908635..2909102 | + | 468 | Protein_2781 | DNA-binding transcriptional regulator PgrR | - |
| M9382_RS14345 () | 2909439..2911052 | + | 1614 | WP_000683016.1 | murein tripeptide ABC transporter substrate-binding protein MppA | - |
| M9382_RS14350 () | 2911103..2912134 | - | 1032 | WP_258248015.1 | low conductance mechanosensitive channel YnaI | - |
| M9382_RS14355 () | 2912262..2912626 | + | 365 | Protein_2784 | IS3 family transposase IS911 | Transposase |
| M9382_RS14360 () | 2912810..2913997 | - | 1188 | WP_000937573.1 | IS91 family transposase ISEc37 | Transposase |
| M9382_RS14365 () | 2913997..2914362 | - | 366 | WP_000124119.1 | hypothetical protein | - |
| M9382_RS14370 () | 2914447..2915259 | + | 813 | Protein_2787 | IS3 family transposase ISLad1 | Transposase |
| M9382_RS14375 () | 2915459..2915716 | + | 258 | Protein_2788 | DUF2534 family protein | - |
| M9382_RS14380 () | 2915766..2916716 | - | 951 | WP_001262146.1 | universal stress protein UspE | - |
| M9382_RS14385 () | 2916868..2917620 | - | 753 | WP_000611911.1 | fumarate/nitrate reduction transcriptional regulator Fnr | - |
| M9382_RS14390 () | 2917815..2918330 | - | 516 | WP_000945011.1 | methylated-DNA--[protein]-cysteine S-methyltransferase | - |
| M9382_RS14395 () | 2918341..2918484 | - | 144 | Protein_2792 | AbgT family transporter | - |
| M9382_RS14400 () | 2918484..2918700 | + | 217 | Protein_2793 | LysR family transcriptional regulator | - |
| M9382_RS14405 () | 2918874..2919689 | - | 816 | WP_000156575.1 | helix-turn-helix transcriptional regulator | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|