MGE detailed information
MGE type: Prophage MGE length: 76643 bp
Accession: NZ_CP097837 Location: 777839..854481 Organism: Shigella flexneri strain B Replicon: chromosome
Accession: NZ_CP097837 Location: 777839..854481 Organism: Shigella flexneri strain B Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| M9380_RS03655 (777131) | 777131..777934 | + | 804 | WP_000997035.1 | 2,5-didehydrogluconate reductase DkgB | - |
| M9380_RS03660 (777973) | 777973..778218 | - | 246 | Protein_702 | IS4 family transposase | - |
| M9380_RS03665 (778677) | 778677..778678 | - | 2 | WP_232046046.1 | IS1 family transposase | - |
| M9380_RS03670 (778986) | 778986..780095 | - | 1110 | Protein_704 | IS4 family transposase IS4 | Transposase |
| M9380_RS03675 (780145) | 780145..781059 | - | 915 | WP_000648578.1 | HTH-type transcriptional regulator DmlR | VF |
| M9380_RS03680 (781300) | 781300..782100 | + | 801 | WP_001230983.1 | endonuclease/exonuclease/phosphatase family protein | - |
| M9380_RS03685 (782178) | 782178..782948 | + | 771 | WP_000211683.1 | class I SAM-dependent methyltransferase | - |
| M9380_RS03690 (782996) | 782996..784354 | - | 1359 | WP_000644678.1 | Membrane-bound lytic murein transglycosylase D | VF |
| M9380_RS03695 (784426) | 784426..785181 | - | 756 | WP_001052754.1 | hydroxyacylglutathione hydrolase | - |
| M9380_RS03700 (785215) | 785215..785937 | + | 723 | WP_005060310.1 | class I SAM-dependent methyltransferase | - |
| M9380_RS03705 (785934) | 785934..786401 | - | 468 | WP_000917883.1 | ribonuclease HI | - |
| M9380_RS03710 (786466) | 786466..787197 | + | 732 | WP_005060334.1 | DNA polymerase III subunit epsilon | - |
| M9380_RS03720 (787537) | 787537..788583 | - | 1047 | WP_000402248.1 | hypothetical protein | VF |
| M9380_RS03725 (788594) | 788594..789579 | - | 986 | Protein_714 | hypothetical protein | VF |
| M9380_RS03730 (789576) | 789576..791459 | - | 1884 | WP_000371479.1 | type VI secretion system baseplate subunit TssF | - |
| M9380_RS03735 (791475) | 791475..791969 | - | 495 | WP_001276640.1 | hypothetical protein | VF |
| M9380_RS03740 (791966) | 791966..792796 | - | 831 | Protein_717 | hypothetical protein | VF |
| M9380_RS03745 (792783) | 792783..793340 | - | 558 | WP_258249507.1 | type VI secretion system-associated protein TagK | - |
| M9380_RS03750 (793392) | 793392..793691 | - | 300 | WP_000804009.1 | FHA domain-containing protein | - |
| M9380_RS03755 (793789) | 793789..795017 | + | 1229 | WP_094081542.1 | IS3 family transposase IS2 | Transposase |
| M9380_RS03760 (795074) | 795074..795361 | - | 288 | WP_000343120.1 | hypothetical protein | - |
| M9380_RS03770 (796542) | 796542..796877 | - | 336 | WP_228355695.1 | IS607 family transposase ISSto13 | Transposase |
| M9380_RS03775 (796793) | 796793..797098 | - | 306 | WP_000206732.1 | protein YfdT | - |
| M9380_RS03780 (797098) | 797098..797457 | - | 360 | WP_000563002.1 | hypothetical protein | - |
| M9380_RS03785 (797441) | 797441..798650 | - | 1210 | Protein_726 | IS3 family transposase IS629 | Transposase |
| M9380_RS03790 (798813) | 798813..799969 | + | 1157 | WP_094081509.1 | IS3 family transposase ISSd1 | Transposase |
| M9380_RS03795 (800015) | 800015..800371 | + | 357 | Protein_728 | integrase | - |
| M9380_RS03800 (800633) | 800633..800995 | + | 363 | WP_000915849.1 | Prophage bactoprenol-linked glucose translocase | VF |
| M9380_RS03805 (800992) | 800992..801912 | + | 921 | WP_000703663.1 | Prophage bactoprenol glucosyl transferase | VF |
| M9380_RS03810 (801915) | 801915..803435 | + | 1521 | WP_228355687.1 | glycosyltransferase family 39 protein | - |
| M9380_RS03815 (803669) | 803669..804109 | - | 441 | WP_001223320.1 | tail assembly chaperone | - |
| M9380_RS03820 (804081) | 804081..804593 | - | 513 | Protein_733 | hypothetical protein | - |
| M9380_RS03825 (804658) | 804658..805814 | + | 1157 | WP_094099483.1 | IS3 family transposase ISSd1 | Transposase |
| M9380_RS03830 (805858) | 805858..806826 | + | 969 | Protein_735 | Tyrosine recombinase XerD ; Integrase | Integrase |
| M9380_RS03840 (807031) | 807031..808284 | - | 1254 | WP_000893267.1 | glutamate-5-semialdehyde dehydrogenase | - |
| M9380_RS03845 (808296) | 808296..809399 | - | 1104 | WP_001285281.1 | glutamate 5-kinase | - |
| M9380_RS03855 (810463) | 810463..811518 | + | 1056 | WP_000749864.1 | phosphoporin PhoE | - |
| M9380_RS03860 (811557) | 811557..811958 | - | 402 | WP_000174678.1 | sigma factor-binding protein Crl | - |
| - (812676) | 812676..812756 | - | 81 | NuclAT_8 | - | - |
| - (812676) | 812676..812756 | - | 81 | NuclAT_8 | - | - |
| - (812676) | 812676..812756 | - | 81 | NuclAT_8 | - | - |
| - (812676) | 812676..812756 | - | 81 | NuclAT_8 | - | - |
| M9380_RS03865 (812016) | 812016..813260 | - | 1245 | WP_000189557.1 | esterase FrsA | - |
| M9380_RS03870 (813352) | 813352..813810 | - | 459 | WP_001291990.1 | xanthine phosphoribosyltransferase | - |
| M9380_RS03875 (814072) | 814072..815529 | + | 1458 | WP_001293009.1 | cytosol nonspecific dipeptidase | - |
| M9380_RS03880 (815586) | 815586..816200 | - | 615 | Protein_744 | peptide chain release factor H | - |
| M9380_RS03885 (816262) | 816262..817305 | - | 1044 | WP_005060486.1 | RNA ligase RtcB family protein | - |
| M9380_RS03890 (817551) | 817551..818003 | - | 453 | WP_001059846.1 | GNAT family N-acetyltransferase | - |
| M9380_RS03895 (818013) | 818013..818411 | - | 399 | WP_001263491.1 | type II toxin-antitoxin system mRNA interferase toxin YafO | Toxin Detail |
| M9380_RS03900 (818414) | 818414..818707 | - | 294 | WP_000554759.1 | type I toxin-antitoxin system antitoxin YafN | Antitoxin Detail |
| M9380_RS03905 (818759) | 818759..819814 | - | 1056 | WP_001226172.1 | DNA polymerase IV | - |
| M9380_RS03910 (819885) | 819885..820670 | - | 786 | WP_000207560.1 | Chemotaxis protein LafU | VF |
| M9380_RS03915 (820642) | 820642..822354 | + | 1713 | Protein_751 | Flagellar biosynthesis protein FlhA | VF |
| M9380_RS03920 (822571) | 822571..823068 | - | 498 | WP_000006251.1 | REP-associated tyrosine transposase RayT | - |
| M9380_RS03925 (823244) | 823244..823765 | - | 522 | Protein_753 | hypothetical protein | VF |
| M9380_RS03930 (824149) | 824149..824889 | + | 741 | WP_001225676.1 | peptidoglycan meso-diaminopimelic acid protein amidase | - |
| M9380_RS03935 (824860) | 824860..825627 | - | 768 | WP_005060449.1 | class II glutamine amidotransferase | - |
| M9380_RS03940 (825833) | 825833..826411 | - | 579 | WP_000284050.1 | Phosphoheptose isomerase | VF |
| M9380_RS03945 (826651) | 826651..829095 | + | 2445 | Protein_757 | Acyl-coenzyme A dehydrogenase | VF |
| M9380_RS03950 (829138) | 829138..829584 | - | 447 | WP_005100645.1 | Ivy family C-type lysozyme inhibitor | - |
| M9380_RS03955 (829765) | 829765..830535 | + | 771 | WP_001139559.1 | 2-oxoglutaramate amidase | - |
| M9380_RS03960 (830645) | 830645..830865 | + | 221 | Protein_760 | SymE family type I addiction module toxin | - |
| M9380_RS03965 (830899) | 830899..831596 | + | 698 | WP_232046045.1 | IS1 family transposase IS1X2 | Transposase |
| M9380_RS03970 (831860) | 831860..832804 | + | 945 | Protein_762 | taurine ABC transporter substrate-binding protein | - |
| M9380_RS03975 (832817) | 832817..833584 | + | 768 | WP_000939367.1 | Taurine import ATP-binding protein TauB | VF |
| M9380_RS03980 (833581) | 833581..834408 | + | 828 | WP_000114607.1 | taurine ABC transporter permease TauC | - |
| M9380_RS03985 (834405) | 834405..835256 | + | 852 | WP_000004031.1 | taurine dioxygenase | - |
| M9380_RS03990 (835362) | 835362..836336 | - | 975 | WP_001295337.1 | porphobilinogen synthase | - |
| M9380_RS03995 (836861) | 836861..837229 | + | 369 | Protein_767 | autotransporter outer membrane beta-barrel domain-containing protein | - |
| M9380_RS04005 (838098) | 838098..839326 | + | 1229 | WP_094081542.1 | IS3 family transposase IS2 | Transposase |
| M9380_RS04010 (839334) | 839334..839867 | + | 534 | Protein_770 | autotransporter outer membrane beta-barrel domain-containing protein | - |
| M9380_RS04015 (839931) | 839931..840038 | + | 108 | Protein_771 | IS3 family transposase ISEhe3 | Transposase |
| M9380_RS04020 (840103) | 840103..841259 | + | 1157 | WP_094081493.1 | IS3 family transposase IS600 | Transposase |
| M9380_RS04025 (841300) | 841300..842345 | + | 1046 | Protein_773 | IS3 family transposase ISEhe3 | Transposase |
| M9380_RS04030 (842365) | 842365..842892 | + | 528 | Protein_774 | autotransporter outer membrane beta-barrel domain-containing protein | - |
| M9380_RS04035 (842980) | 842980..843483 | + | 504 | WP_000953938.1 | helix-turn-helix domain-containing protein | - |
| M9380_RS04040 (843484) | 843484..844641 | - | 1158 | WP_000830735.1 | D-alanyl-D-alanine- carboxypeptidase/endopeptidase AmpH | - |
| M9380_RS04045 (844993) | 844993..846213 | + | 1221 | WP_005062822.1 | peptide antibiotic transporter SbmA | - |
| M9380_RS04050 (846226) | 846226..847320 | + | 1095 | WP_000092055.1 | surface-exposed outer membrane lipoprotein YaiW | - |
| M9380_RS04055 (847379) | 847379..847687 | - | 309 | WP_000763148.1 | YaiY family protein | - |
| M9380_RS04060 (847947) | 847947..848159 | + | 213 | WP_001599861.1 | DUF2754 domain-containing protein | - |
| M9380_RS04065 (848183) | 848183..849277 | - | 1095 | WP_000413677.1 | D-alanine--D-alanine ligase | - |
| M9380_RS04070 (849355) | 849355..849558 | + | 204 | WP_023517632.1 | hypothetical protein | - |
| M9380_RS04075 (849740) | 849740..850000 | + | 261 | WP_000792969.1 | anti-adapter protein IraP | - |
| M9380_RS04080 (850101) | 850101..851516 | + | 1416 | WP_000814400.1 | alkaline phosphatase | - |
| M9380_RS04085 (851635) | 851635..851955 | + | 321 | WP_005053289.1 | phosphate starvation-inducible protein PsiF | - |
| M9380_RS04090 (852006) | 852006..853215 | - | 1210 | Protein_786 | IS3 family transposase IS629 | Transposase |
| M9380_RS04095 (853366) | 853366..854481 | + | 1116 | WP_005053118.1 | diguanylate cyclase AdrA | - |
| M9380_RS04100 (854498) | 854498..855307 | - | 810 | WP_001295331.1 | pyrroline-5-carboxylate reductase | - |
| M9380_RS04105 (855427) | 855427..855885 | + | 459 | WP_000158130.1 | YaiI/YqxD family protein | - |
| M9380_RS04110 (856068) | 856068..856592 | + | 525 | WP_000193385.1 | shikimate kinase AroL | - |
| M9380_RS04115 (856642) | 856642..856830 | + | 189 | WP_001142438.1 | protein YaiA | - |
| M9380_RS04120 (857091) | 857091..857768 | + | 678 | WP_001276420.1 | AroM family protein | - |
| M9380_RS04125 (857840) | 857840..858124 | + | 285 | WP_000941942.1 | pyrimidine/purine nucleoside phosphorylase | - |
| M9380_RS04130 (858279) | 858279..858614 | + | 336 | Protein_794 | DUF2773 domain-containing protein | - |
| M9380_RS04135 (858611) | 858611..859066 | + | 456 | WP_000194195.1 | hypothetical protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|