MGE detailed information
MGE type: Prophage MGE length: 47284 bp
Accession: NZ_CP097837 Location: 1897030..1944313 Organism: Shigella flexneri strain B Replicon: chromosome
Accession: NZ_CP097837 Location: 1897030..1944313 Organism: Shigella flexneri strain B Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| M9380_RS09490 () | 1892867..1894408 | + | 1542 | WP_001306544.1 | transcriptional regulator TyrR | - |
| M9380_RS09495 () | 1894452..1894958 | - | 507 | WP_000084387.1 | thiol peroxidase | - |
| M9380_RS09500 () | 1895077..1896036 | + | 960 | WP_005062222.1 | L-Ala-D/L-Glu epimerase | - |
| M9380_RS09505 () | 1896011..1896739 | - | 729 | WP_005061999.1 | murein tripeptide amidase MpaA | - |
| M9380_RS09510 () | 1897030..1897668 | - | 639 | WP_005049763.1 | SDR family oxidoreductase | - |
| M9380_RS09515 () | 1897686..1898624 | - | 939 | Protein_1844 | alpha/beta hydrolase | - |
| M9380_RS09520 () | 1898624..1899544 | - | 921 | WP_000981715.1 | alpha/beta hydrolase | - |
| M9380_RS09525 () | 1899682..1900116 | + | 435 | Protein_1846 | HTH-type transcriptional regulator PgrR | VF |
| M9380_RS09535 () | 1901421..1901831 | + | 411 | Protein_1848 | YdaU family protein | - |
| M9380_RS09545 () | 1903597..1903766 | + | 170 | Protein_1850 | hypothetical protein | - |
| M9380_RS09550 () | 1903912..1904655 | + | 744 | WP_000788999.1 | ATP-binding protein | - |
| M9380_RS09555 () | 1904670..1905092 | + | 423 | WP_001118167.1 | DUF977 family protein | - |
| M9380_RS09560 () | 1905150..1905506 | + | 357 | WP_005048249.1 | hypothetical protein | - |
| M9380_RS09565 () | 1905599..1905817 | + | 219 | WP_000256998.1 | DUF4014 family protein | - |
| M9380_RS09570 () | 1905819..1906184 | + | 366 | WP_001229298.1 | HNH endonuclease signature motif containing protein | - |
| M9380_RS09575 () | 1906181..1906846 | + | 666 | WP_000208062.1 | hypothetical protein | - |
| M9380_RS09580 () | 1906846..1907211 | + | 366 | WP_000610655.1 | DUF551 domain-containing protein | - |
| - | 1907596..1907654 | - | 59 | - | - | Antitoxin Detail |
| M9380_RS09585 () | 1907666..1907821 | + | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | Toxin Detail |
| M9380_RS09595 () | 1909158..1909757 | + | 600 | WP_000940329.1 | DUF1367 family protein | - |
| M9380_RS09600 () | 1909757..1910047 | + | 291 | WP_000228038.1 | DUF1364 domain-containing protein | - |
| M9380_RS09605 () | 1910044..1910598 | + | 555 | WP_000640143.1 | DUF1133 family protein | - |
| M9380_RS09610 () | 1910739..1910924 | + | 186 | WP_005049799.1 | hypothetical protein | - |
| M9380_RS09615 () | 1910986..1912142 | + | 1157 | WP_094081550.1 | IS3 family transposase IS600 | Transposase |
| M9380_RS09620 () | 1912135..1912695 | + | 561 | WP_072075205.1 | ORF6N domain-containing protein | - |
| M9380_RS09650 () | 1914645..1915070 | + | 426 | Protein_1867 | hypothetical protein ; Integrase | Integrase |
| M9380_RS09655 () | 1915910..1916071 | + | 162 | Protein_1868 | Rha family transcriptional regulator | - |
| M9380_RS09660 () | 1916130..1916827 | + | 698 | WP_227804319.1 | IS1 family transposase IS1X2 | Transposase |
| M9380_RS09665 () | 1916843..1917748 | + | 906 | Protein_1870 | IS3 family transposase IS600 | Transposase |
| M9380_RS09670 () | 1917776..1918144 | + | 369 | WP_011069357.1 | hypothetical protein | - |
| M9380_RS09675 () | 1918168..1918712 | + | 545 | Protein_1872 | tail fiber assembly protein | - |
| M9380_RS09680 () | 1918736..1919925 | + | 1190 | Protein_1873 | prophage tail fiber N-terminal domain-containing protein | - |
| M9380_RS09685 () | 1919876..1920499 | + | 624 | WP_000930141.1 | DUF4376 domain-containing protein | - |
| M9380_RS09690 () | 1920700..1921557 | - | 858 | WP_000968134.1 | Manganese transport system membrane protein MntB | ARG |
| M9380_RS09695 () | 1921554..1922411 | - | 858 | WP_001101728.1 | Manganese transport system membrane protein MntB | ARG |
| M9380_RS09700 () | 1922408..1923235 | - | 828 | WP_000983722.1 | Manganese transport system ATP-binding protein MntB | VF |
| M9380_RS09705 () | 1923235..1924149 | - | 915 | WP_000555620.1 | putative periplasmic iron-binding protein | VF |
| M9380_RS09710 () | 1924622..1925263 | - | 642 | Protein_1879 | Putative defective protein IntQ ; Integrase | Integrase |
| M9380_RS09715 () | 1925317..1926014 | + | 698 | WP_252968685.1 | IS1 family transposase IS1X2 | Transposase |
| M9380_RS09720 () | 1926031..1926201 | - | 171 | Protein_1881 | DUF3596 domain-containing protein | - |
| M9380_RS09725 () | 1926203..1926370 | - | 168 | WP_005049823.1 | excisionase family protein | - |
| M9380_RS09730 () | 1926418..1927627 | - | 1210 | Protein_1883 | IS3 family transposase IS629 | Transposase |
| M9380_RS09735 () | 1927702..1927884 | - | 183 | WP_252706320.1 | hypothetical protein | - |
| M9380_RS09745 () | 1929200..1929508 | - | 309 | WP_232046049.1 | host-nuclease inhibitor Gam family protein | - |
| M9380_RS09750 () | 1929607..1930763 | + | 1157 | WP_094190485.1 | IS3 family transposase IS600 | Transposase |
| M9380_RS09755 () | 1930820..1932235 | - | 1416 | Protein_1888 | exodeoxyribonuclease VIII | - |
| M9380_RS09760 () | 1932335..1932610 | - | 276 | WP_005049830.1 | hypothetical protein | - |
| M9380_RS09765 () | 1932685..1932855 | - | 171 | WP_001359121.1 | YdaE family protein | - |
| M9380_RS09770 () | 1932855..1933076 | - | 222 | WP_000560226.1 | killing protein KilR | - |
| M9380_RS09780 () | 1934423..1935311 | - | 889 | Protein_1893 | Rha family transcriptional regulator | - |
| M9380_RS09785 () | 1935788..1936024 | + | 237 | WP_001275006.1 | hypothetical protein | - |
| M9380_RS09790 () | 1936534..1936914 | + | 381 | Protein_1895 | IS66 family transposase ISSfl3 | Transposase |
| M9380_RS09795 () | 1936916..1937083 | + | 168 | Protein_1896 | IS66 family transposase ISSfl3 | Transposase |
| M9380_RS09800 () | 1937034..1937657 | + | 624 | WP_039064861.1 | DUF4376 domain-containing protein | - |
| M9380_RS09805 () | 1937837..1939543 | - | 1707 | WP_000936830.1 | E3 ubiquitin-protein ligase ipaH3 | VF |
| M9380_RS09810 () | 1940294..1940740 | + | 447 | Protein_1899 | metallophosphoesterase | - |
| M9380_RS09815 () | 1940805..1941961 | + | 1157 | WP_094081550.1 | IS3 family transposase IS600 | Transposase |
| M9380_RS09820 () | 1942005..1942193 | + | 189 | Protein_1901 | serine/threonine-protein phosphatase | - |
| M9380_RS09825 () | 1942218..1942409 | - | 192 | WP_001296140.1 | YebW family protein | - |
| M9380_RS09830 () | 1942514..1942750 | - | 237 | WP_001295499.1 | YebV family protein | - |
| M9380_RS09835 () | 1942868..1944307 | - | 1440 | WP_000057029.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| M9380_RS09840 () | 1944387..1947007 | - | 2621 | Protein_1905 | lipid-binding membrane homeostasis protein YebT | - |
| M9380_RS09845 () | 1946976..1948259 | - | 1284 | WP_001207281.1 | membrane integrity lipid transport subunit YebS | - |
| M9380_RS09850 () | 1948389..1948886 | + | 498 | WP_001043881.1 | L-methionine (R)-S-oxide reductase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|