MGE detailed information
MGE type: Prophage MGE length: 95602 bp
Accession: NZ_CP097837 Location: 1182077..1277678 Organism: Shigella flexneri strain B Replicon: chromosome
Accession: NZ_CP097837 Location: 1182077..1277678 Organism: Shigella flexneri strain B Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| M9380_RS05700 (1177372) | 1177372..1177635 | + | 264 | WP_000850550.1 | DUF493 family protein YbeD | - |
| M9380_RS05705 (1177736) | 1177736..1178377 | + | 642 | WP_000284045.1 | lipoyl(octanoyl) transferase LipB | - |
| M9380_RS05710 (1178636) | 1178636..1179589 | + | 954 | WP_000378035.1 | YbeF family transcriptional regulator | - |
| M9380_RS05715 (1179798) | 1179798..1180763 | + | 966 | WP_000042632.1 | lipoyl synthase | - |
| M9380_RS05720 (1180864) | 1180864..1181067 | - | 204 | WP_000503931.1 | twin-arginine translocase subunit TatE | - |
| M9380_RS05725 (1181196) | 1181196..1181984 | - | 789 | WP_005049482.1 | deaminated glutathione amidase | - |
| M9380_RS05730 (1182077) | 1182077..1182460 | + | 384 | WP_000939741.1 | fluoride efflux transporter CrcB | - |
| M9380_RS05735 (1182514) | 1182514..1182723 | - | 210 | WP_000034825.1 | transcription antiterminator/RNA stability regulator CspE | - |
| M9380_RS05740 (1182898) | 1182898..1183458 | - | 561 | WP_005049488.1 | lipid IV(A) palmitoyltransferase PagP | - |
| M9380_RS05745 (1184046) | 1184046..1185431 | + | 1386 | WP_000955062.1 | anaerobic C4-dicarboxylate transporter DcuC | - |
| M9380_RS05750 (1185472) | 1185472..1185813 | - | 342 | Protein_1106 | response regulator | - |
| M9380_RS05755 (1186151) | 1186151..1186660 | - | 510 | WP_000833599.1 | DNA-binding protein | - |
| M9380_RS05760 (1186832) | 1186832..1187068 | + | 237 | WP_014532185.1 | helix-turn-helix transcriptional regulator | - |
| M9380_RS05765 (1187043) | 1187043..1188674 | + | 1632 | Protein_1109 | transposase domain-containing protein | - |
| M9380_RS05770 (1188739) | 1188739..1189895 | + | 1157 | WP_094081558.1 | IS3 family transposase IS600 | Transposase |
| M9380_RS05775 (1189907) | 1189907..1190182 | + | 276 | WP_011069283.1 | hypothetical protein | - |
| M9380_RS05780 (1190179) | 1190179..1191120 | - | 942 | WP_000627469.1 | DUF2184 domain-containing protein | - |
| M9380_RS05785 (1191132) | 1191132..1191621 | - | 490 | Protein_1113 | hypothetical protein | - |
| M9380_RS05790 (1191625) | 1191625..1192845 | - | 1221 | WP_000873151.1 | DUF2213 domain-containing protein | - |
| M9380_RS05795 (1192849) | 1192849..1193592 | - | 744 | WP_000184977.1 | phage minor head protein | - |
| M9380_RS05800 (1193483) | 1193483..1194949 | - | 1467 | WP_000113500.1 | DUF1073 domain-containing protein | - |
| M9380_RS05805 (1194949) | 1194949..1195682 | - | 734 | Protein_1117 | PBSX family phage terminase large subunit | - |
| M9380_RS05815 (1197013) | 1197013..1197621 | - | 609 | Protein_1119 | PBSX family phage terminase large subunit | - |
| M9380_RS05820 (1197632) | 1197632..1197706 | - | 75 | Protein_1120 | hypothetical protein | - |
| M9380_RS05825 (1197779) | 1197779..1198947 | + | 1169 | WP_000747032.1 | IS3 family transposase ISLad1 | Transposase |
| M9380_RS05830 (1198953) | 1198953..1199648 | - | 696 | WP_001108105.1 | hypothetical protein | - |
| M9380_RS05835 (1199843) | 1199843..1200355 | + | 513 | WP_011069285.1 | VTT domain-containing protein | - |
| M9380_RS05840 (1200444) | 1200444..1200692 | - | 249 | Protein_1124 | lysis system i-spanin subunit Rz | - |
| M9380_RS05850 (1201939) | 1201939..1202043 | - | 105 | Protein_1126 | lysozyme | - |
| M9380_RS05855 (1202043) | 1202043..1202171 | - | 129 | Protein_1127 | phage holin | - |
| M9380_RS05860 (1202236) | 1202236..1203365 | + | 1130 | WP_130862222.1 | IS3 family transposase ISSfl10 | Transposase |
| M9380_RS05865 (1203406) | 1203406..1204347 | + | 942 | Protein_1129 | hypothetical protein ; Integrase | Integrase |
| M9380_RS05870 (1204482) | 1204482..1205765 | + | 1284 | WP_001091541.1 | putative acyl-CoA thioester hydrolase | - |
| M9380_RS05875 (1205906) | 1205906..1208086 | - | 2181 | WP_000593952.1 | hydratase | - |
| M9380_RS05880 (1208269) | 1208269..1209702 | - | 1434 | WP_001036462.1 | anion permease | - |
| M9380_RS05885 (1209778) | 1209778..1210830 | - | 1053 | WP_000723619.1 | 4-oxalomesaconate tautomerase | - |
| M9380_RS05890 (1211014) | 1211014..1211967 | + | 954 | Protein_1134 | LysR family transcriptional regulator | - |
| M9380_RS05895 (1212008) | 1212008..1213003 | - | 996 | WP_000815445.1 | 6-phosphogluconolactonase | - |
| M9380_RS05900 (1213305) | 1213305..1213394 | - | 90 | Protein_1136 | Tn3 family transposase TnpR_TnShfr1 | Transposase |
| M9380_RS05905 (1213885) | 1213885..1215711 | + | 1827 | WP_011110560.1 | E3 ubiquitin-protein ligase ipaH3 | VF |
| M9380_RS05915 (1215891) | 1215891..1216508 | - | 618 | WP_005061679.1 | DUF4376 domain-containing protein | - |
| M9380_RS05920 (1216574) | 1216574..1217730 | + | 1157 | WP_128599167.1 | IS3 family transposase IS600 | Transposase |
| M9380_RS05925 (1217741) | 1217741..1217973 | + | 233 | Protein_1140 | hypothetical protein | - |
| M9380_RS05930 (1218073) | 1218073..1218267 | + | 195 | Protein_1141 | hypothetical protein | - |
| M9380_RS05940 (1219469) | 1219469..1219951 | + | 483 | Protein_1143 | hypothetical protein | - |
| M9380_RS05950 (1221187) | 1221187..1221303 | - | 117 | Protein_1145 | hypothetical protein | - |
| M9380_RS05955 (1221339) | 1221339..1221620 | - | 282 | WP_001069001.1 | YdaE family protein | - |
| M9380_RS05960 (1221637) | 1221637..1222485 | - | 849 | WP_000935590.1 | Rha family phage regulatory protein | - |
| M9380_RS05965 (1223033) | 1223033..1224261 | + | 1229 | WP_094081542.1 | IS3 family transposase IS2 | Transposase |
| M9380_RS05970 (1224503) | 1224503..1224706 | - | 204 | WP_001005968.1 | hypothetical protein | - |
| M9380_RS05975 (1224708) | 1224708..1224863 | - | 156 | WP_001091985.1 | DUF1391 family protein | - |
| M9380_RS05980 (1225066) | 1225066..1225473 | - | 408 | WP_000787424.1 | helix-turn-helix domain-containing protein | - |
| M9380_RS05985 (1225550) | 1225550..1225777 | + | 228 | WP_000912291.1 | Cro/CI family transcriptional regulator | - |
| M9380_RS05990 (1225761) | 1225761..1226183 | + | 423 | WP_000702036.1 | toxin YdaT family protein | - |
| M9380_RS05995 (1226261) | 1226261..1226911 | + | 651 | WP_005107109.1 | hypothetical protein | - |
| M9380_RS06000 (1227057) | 1227057..1227803 | + | 747 | Protein_1155 | ATP-binding protein | - |
| M9380_RS06005 (1227818) | 1227818..1228240 | + | 423 | WP_001118167.1 | DUF977 family protein | - |
| M9380_RS06010 (1228298) | 1228298..1228654 | + | 357 | WP_005048249.1 | hypothetical protein | - |
| M9380_RS06015 (1228823) | 1228823..1229488 | + | 666 | WP_012421537.1 | epoxyqueuosine reductase QueH | - |
| M9380_RS06020 (1229716) | 1229716..1229871 | + | 156 | WP_014532198.1 | type I toxin-antitoxin system toxin HokD | - |
| M9380_RS06025 (1230121) | 1230121..1230408 | + | 288 | WP_000687442.1 | hypothetical protein | - |
| M9380_RS06030 (1230447) | 1230447..1230815 | + | 369 | Protein_1161 | DUF1367 family protein | - |
| M9380_RS06040 (1232080) | 1232080..1232313 | + | 234 | Protein_1163 | DUF1367 family protein | - |
| M9380_RS06045 (1232313) | 1232313..1232603 | + | 291 | WP_000228005.1 | DUF1364 domain-containing protein | - |
| M9380_RS06050 (1232600) | 1232600..1232710 | + | 111 | Protein_1165 | DUF1133 family protein | - |
| M9380_RS06055 (1232787) | 1232787..1233955 | + | 1169 | WP_000747032.1 | IS3 family transposase ISLad1 | Transposase |
| M9380_RS06060 (1233966) | 1233966..1234406 | + | 441 | Protein_1167 | DUF1133 family protein | - |
| M9380_RS06085 (1235586) | 1235586..1235675 | + | 90 | Protein_1168 | phage holin | - |
| M9380_RS06100 (1238216) | 1238216..1238410 | + | 195 | Protein_1171 | hypothetical protein | - |
| M9380_RS06105 (1238485) | 1238485..1238763 | + | 279 | WP_005061104.1 | hypothetical protein | - |
| M9380_RS06110 (1238760) | 1238760..1239170 | + | 411 | WP_000814621.1 | recombination protein NinB | - |
| M9380_RS06115 (1239167) | 1239167..1239343 | + | 177 | WP_001252556.1 | NinE family protein | - |
| M9380_RS06120 (1239385) | 1239385..1239693 | - | 309 | WP_000147081.1 | helix-turn-helix transcriptional regulator | Antitoxin Detail |
| M9380_RS06125 (1239683) | 1239683..1239913 | - | 231 | WP_005061113.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| M9380_RS06130 (1239926) | 1239926..1240384 | + | 459 | WP_000961311.1 | ash family protein | - |
| M9380_RS06135 (1240442) | 1240442..1240894 | + | 453 | WP_232046050.1 | Rha family transcriptional regulator | - |
| M9380_RS06140 (1240891) | 1240891..1241124 | + | 234 | WP_000618004.1 | hypothetical protein | - |
| M9380_RS06145 (1241111) | 1241111..1242019 | + | 909 | WP_001247840.1 | hypothetical protein | - |
| M9380_RS06150 (1242030) | 1242030..1242908 | + | 879 | WP_000988183.1 | ATP-binding protein | - |
| M9380_RS06155 (1242905) | 1242905..1244296 | + | 1392 | WP_000211324.1 | replicative DNA helicase | - |
| M9380_RS06160 (1244293) | 1244293..1244550 | + | 258 | WP_001064799.1 | hypothetical protein | - |
| M9380_RS06165 (1244645) | 1244645..1244845 | + | 201 | WP_000111769.1 | protein ninH | - |
| M9380_RS06170 (1244838) | 1244838..1245218 | + | 381 | WP_001204832.1 | antiterminator Q family protein | - |
| M9380_RS06195 (1246021) | 1246021..1246236 | + | 216 | WP_000839566.1 | class II holin family protein | - |
| M9380_RS06200 (1246240) | 1246240..1246869 | + | 630 | WP_005094817.1 | hypothetical protein | - |
| M9380_RS06205 (1246935) | 1246935..1247468 | + | 534 | WP_001274722.1 | lysozyme | - |
| M9380_RS06210 (1247465) | 1247465..1247932 | + | 468 | WP_000092287.1 | lysis protein | - |
| M9380_RS06215 (1248135) | 1248135..1248314 | + | 180 | Protein_1190 | Rha family transcriptional regulator | - |
| M9380_RS06220 (1248358) | 1248358..1249364 | - | 1007 | Protein_1191 | IS3 family transposase ISSfl10 | Transposase |
| M9380_RS06225 (1249416) | 1249416..1250625 | - | 1210 | Protein_1192 | IS3 family transposase IS629 | Transposase |
| M9380_RS06230 (1250681) | 1250681..1251720 | + | 1040 | Protein_1193 | IS3 family transposase IS600 | Transposase |
| M9380_RS06235 (1251763) | 1251763..1252071 | + | 309 | Protein_1194 | terminase small subunit | - |
| M9380_RS06240 (1252043) | 1252043..1253971 | + | 1929 | WP_001026848.1 | phage terminase large subunit family protein | - |
| M9380_RS06245 (1253955) | 1253955..1254158 | + | 204 | WP_000259004.1 | gpW family head-tail joining protein | - |
| M9380_RS06250 (1254155) | 1254155..1255748 | + | 1594 | Protein_1197 | phage portal protein | - |
| M9380_RS06255 (1255738) | 1255738..1257243 | + | 1506 | WP_001254016.1 | S49 family peptidase | - |
| M9380_RS06260 (1257280) | 1257280..1257627 | + | 348 | WP_000256830.1 | head decoration protein | - |
| M9380_RS06265 (1257685) | 1257685..1258713 | + | 1029 | WP_000522637.1 | major capsid protein | - |
| M9380_RS06270 (1258765) | 1258765..1259151 | + | 387 | WP_000201488.1 | DNA-packaging protein FI | - |
| M9380_RS06275 (1259163) | 1259163..1259540 | + | 378 | WP_000348593.1 | head-tail joining protein | - |
| M9380_RS06280 (1259527) | 1259527..1260111 | + | 585 | WP_000677140.1 | phage tail protein | - |
| M9380_RS06285 (1260108) | 1260108..1260509 | + | 402 | WP_001079406.1 | phage minor tail U family protein | - |
| M9380_RS06290 (1260520) | 1260520..1261260 | + | 741 | WP_000211126.1 | phage tail tube protein | - |
| M9380_RS06295 (1261319) | 1261319..1261705 | + | 387 | WP_000478927.1 | phage minor tail protein G | - |
| M9380_RS06300 (1261714) | 1261714..1262043 | + | 330 | WP_001161004.1 | phage tail assembly protein T | - |
| M9380_RS06305 (1262015) | 1262015..1264753 | + | 2739 | WP_039064761.1 | phage tail tape measure protein | - |
| M9380_RS06310 (1264753) | 1264753..1265082 | + | 330 | WP_000447264.1 | phage tail protein | - |
| M9380_RS06315 (1265082) | 1265082..1265780 | + | 699 | WP_001152490.1 | phage minor tail protein L | - |
| M9380_RS06320 (1265785) | 1265785..1266528 | + | 744 | WP_000194737.1 | C40 family peptidase | - |
| M9380_RS06325 (1266492) | 1266492..1267067 | + | 576 | WP_005105520.1 | tail assembly protein | - |
| M9380_RS06330 (1267128) | 1267128..1270608 | + | 3481 | Protein_1213 | host specificity protein J | - |
| M9380_RS06335 (1270676) | 1270676..1271275 | + | 600 | WP_001230368.1 | Outer membrane protein X | VF |
| M9380_RS06340 (1271339) | 1271339..1272754 | + | 1416 | WP_000268794.1 | prophage tail fiber N-terminal domain-containing protein | - |
| M9380_RS06345 (1272705) | 1272705..1273328 | + | 624 | WP_000930145.1 | DUF4376 domain-containing protein | - |
| M9380_RS06355 (1273508) | 1273508..1275271 | - | 1764 | WP_000801162.1 | putative E3 ubiquitin-protein ligase ipaH4.5 | VF |
| M9380_RS06360 (1275363) | 1275363..1275449 | + | 87 | Protein_1218 | transposase | - |
| M9380_RS06365 (1275459) | 1275459..1275539 | - | 81 | Protein_1219 | hypothetical protein | - |
| M9380_RS06370 (1275854) | 1275854..1276330 | - | 477 | WP_000767391.1 | kinase inhibitor | - |
| M9380_RS06375 (1276389) | 1276389..1277678 | - | 1290 | WP_005048541.1 | Adenosylmethionine-8-amino-7-oxononanoate aminotransferase | VF |
| M9380_RS06380 (1277765) | 1277765..1278805 | + | 1041 | WP_000951226.1 | biotin synthase BioB | - |
| M9380_RS06385 (1278802) | 1278802..1279956 | + | 1155 | WP_000118810.1 | 8-amino-7-oxononanoate synthase | - |
| M9380_RS06390 (1279943) | 1279943..1280698 | + | 756 | WP_000246759.1 | malonyl-ACP O-methyltransferase BioC | - |
| M9380_RS06395 (1280691) | 1280691..1281368 | + | 678 | WP_000044868.1 | dethiobiotin synthase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|