MGE detailed information
MGE type: Prophage MGE length: 64078 bp
Accession: NZ_CP097834 Location: 807975..872052 Organism: Shigella flexneri strain C Replicon: chromosome
Accession: NZ_CP097834 Location: 807975..872052 Organism: Shigella flexneri strain C Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| M9379_RS04055 () | 803181..805610 | + | 2430 | WP_001229400.1 | trimethylamine N-oxide reductase TorZ | - |
| M9379_RS04060 () | 805775..806746 | - | 972 | WP_000564755.1 | tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB | - |
| M9379_RS04065 () | 806743..807486 | - | 744 | WP_000019588.1 | carboxy-S-adenosyl-L-methionine synthase CmoA | - |
| M9379_RS04070 () | 807527..807922 | - | 396 | WP_000252980.1 | MAPEG family protein | - |
| M9379_RS04075 () | 807975..808322 | - | 348 | Protein_791 | DUF72 domain-containing protein | - |
| M9379_RS04080 () | 808555..809723 | + | 1169 | WP_000747032.1 | IS3 family transposase ISLad1 | Transposase |
| M9379_RS04085 () | 809760..810449 | + | 690 | WP_001064885.1 | hypothetical protein | VF |
| M9379_RS04110 () | 811635..812831 | - | 1197 | WP_258248023.1 | IS110 family transposase ISSfl4 | Transposase |
| M9379_RS04115 () | 813095..813496 | + | 402 | WP_001074423.1 | DNA-packaging protein FI | - |
| M9379_RS04120 () | 813508..813879 | + | 372 | WP_000753025.1 | head-tail joining protein | - |
| M9379_RS04125 () | 813866..814456 | + | 591 | WP_000677117.1 | phage tail protein | - |
| M9379_RS04130 () | 814453..814854 | + | 402 | WP_001079406.1 | phage minor tail U family protein | - |
| M9379_RS04135 () | 814865..815605 | + | 741 | WP_000211126.1 | phage tail tube protein | - |
| M9379_RS04140 () | 815664..816050 | + | 387 | WP_000478927.1 | phage minor tail protein G | - |
| M9379_RS04145 () | 816059..816388 | + | 330 | WP_001161004.1 | phage tail assembly protein T | - |
| M9379_RS04150 () | 816360..819098 | + | 2739 | WP_039064761.1 | phage tail tape measure protein | - |
| M9379_RS04155 () | 819098..819427 | + | 330 | WP_000447264.1 | phage tail protein | - |
| M9379_RS04160 () | 819427..820125 | + | 699 | WP_001152490.1 | phage minor tail protein L | - |
| M9379_RS04165 () | 820130..820873 | + | 744 | WP_000194737.1 | C40 family peptidase | - |
| M9379_RS04170 () | 820837..821412 | + | 576 | WP_005105520.1 | tail assembly protein | - |
| M9379_RS04175 () | 821473..824953 | + | 3481 | Protein_807 | host specificity protein J | - |
| M9379_RS04180 () | 825021..825620 | + | 600 | WP_258248022.1 | Outer membrane protein X | VF |
| M9379_RS04185 () | 825684..827099 | + | 1416 | WP_000268794.1 | prophage tail fiber N-terminal domain-containing protein | - |
| M9379_RS04190 () | 827050..827673 | + | 624 | WP_000930145.1 | DUF4376 domain-containing protein | - |
| M9379_RS04200 () | 827853..829604 | - | 1752 | WP_005031414.1 | E3 ubiquitin-protein ligase ipaH9.8 | VF |
| M9379_RS04205 () | 830205..830453 | - | 249 | WP_001210039.1 | DinI-like family protein | - |
| M9379_RS04210 () | 830716..830811 | - | 96 | Protein_813 | hypothetical protein | - |
| M9379_RS04215 () | 830808..831155 | - | 348 | Protein_814 | hydrolase | - |
| M9379_RS04220 () | 831182..832378 | - | 1197 | WP_005062405.1 | IS110 family transposase ISSfl4 | Transposase |
| M9379_RS04225 () | 832612..832824 | - | 213 | Protein_816 | isochorismatase family protein | - |
| M9379_RS04230 () | 833134..834906 | + | 1773 | WP_001258670.1 | aspartate--tRNA ligase | - |
| M9379_RS04235 () | 835024..835476 | + | 453 | WP_001300367.1 | dihydroneopterin triphosphate diphosphatase | - |
| M9379_RS04240 () | 835505..836245 | + | 741 | WP_258248021.1 | putative transcriptional regulatory protein YebC | VF |
| M9379_RS04245 () | 836280..836801 | + | 522 | WP_000974712.1 | crossover junction endodeoxyribonuclease RuvC | - |
| M9379_RS04250 () | 836803..837405 | - | 603 | WP_001024930.1 | YebB family permuted papain-like enzyme | - |
| M9379_RS04255 () | 837474..837539 | + | 66 | WP_001386853.1 | stress response small protein YobI | - |
| M9379_RS04260 () | 837678..838289 | + | 612 | WP_000580324.1 | Holliday junction branch migration protein RuvA | - |
| M9379_RS04265 () | 838298..839308 | + | 1011 | WP_000568525.1 | Holliday junction branch migration DNA helicase RuvB | - |
| M9379_RS04270 () | 839455..840240 | - | 786 | WP_000571470.1 | High-affinity zinc uptake system membrane protein ZnuB | VF |
| M9379_RS04275 () | 840237..840992 | - | 756 | WP_000202992.1 | Zinc import ATP-binding protein ZnuC | VF |
| M9379_RS04280 () | 841071..842003 | + | 933 | WP_001342995.1 | zinc ABC transporter substrate-binding protein ZnuA | - |
| M9379_RS04285 () | 842019..843341 | + | 1323 | WP_001184045.1 | murein DD-endopeptidase MepM | - |
| M9379_RS04290 () | 843461..844432 | + | 972 | WP_000448385.1 | Lipid A biosynthesis myristoyltransferase 1 | VF |
| M9379_RS04295 () | 844563..846005 | - | 1443 | WP_000044415.1 | pyruvate kinase | - |
| M9379_RS04300 () | 846133..847002 | - | 870 | WP_001056694.1 | DNA-binding transcriptional regulator HexR | - |
| M9379_RS04305 () | 847339..848814 | + | 1476 | WP_000301736.1 | glucose-6-phosphate dehydrogenase | - |
| M9379_RS04310 () | 849049..849666 | + | 618 | Protein_833 | dihydroxy-acid dehydratase | - |
| M9379_RS04315 () | 849722..850419 | + | 698 | WP_225620329.1 | IS1 family transposase IS1X2 | Transposase |
| M9379_RS04320 () | 850435..851637 | + | 1203 | Protein_835 | phosphogluconate dehydratase | - |
| M9379_RS04325 () | 851674..852315 | + | 642 | WP_000800512.1 | bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase | - |
| M9379_RS04330 () | 852371..853549 | - | 1179 | WP_000173488.1 | formate-dependent phosphoribosylglycinamide formyltransferase | - |
| M9379_RS04335 () | 853731..853973 | + | 243 | Protein_838 | YebG family protein | - |
| M9379_RS04340 () | 854040..854396 | + | 357 | WP_005062375.1 | protein YebF | - |
| M9379_RS04345 () | 854723..855382 | + | 660 | WP_000024751.1 | tellurite resistance TerB family protein | - |
| M9379_RS04350 () | 855592..857652 | + | 2061 | WP_000936980.1 | oligopeptidase B | - |
| M9379_RS04355 () | 857649..858311 | - | 663 | WP_000944271.1 | exodeoxyribonuclease X | - |
| M9379_RS04360 () | 858335..858991 | - | 657 | Protein_843 | carbon-nitrogen hydrolase family protein YobB | - |
| M9379_RS04365 () | 859093..859323 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| M9379_RS04370 () | 859462..859836 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| M9379_RS04375 () | 859840..860712 | + | 873 | Protein_846 | copper homeostasis membrane protein CopD | - |
| M9379_RS04380 () | 860725..861066 | + | 342 | WP_000976476.1 | YebY family protein | - |
| - | 861094..861328 | - | 235 | - | - | Antitoxin Detail |
| - | 861224..861327 | + | 104 | - | - | Toxin Detail |
| M9379_RS04385 () | 861459..862535 | - | 1077 | Protein_848 | hypothetical protein ; Integrase | Integrase |
| M9379_RS04390 () | 862501..862782 | - | 282 | WP_005127484.1 | excisionase | - |
| M9379_RS04395 () | 862899..863747 | - | 849 | Protein_850 | IS3 family transposase ISSd1 | Transposase |
| M9379_RS04400 () | 863802..865011 | + | 1210 | Protein_851 | IS3 family transposase IS629 | Transposase |
| M9379_RS04405 () | 865054..865364 | - | 311 | Protein_852 | IS3 family transposase ISSfl10 | Transposase |
| M9379_RS04410 () | 865428..865895 | + | 468 | Protein_853 | DNA-binding transcriptional regulator PgrR | - |
| M9379_RS04415 () | 866232..867845 | + | 1614 | WP_000683016.1 | murein tripeptide ABC transporter substrate-binding protein MppA | - |
| M9379_RS04420 () | 867896..868927 | - | 1032 | WP_258248015.1 | low conductance mechanosensitive channel YnaI | - |
| M9379_RS04425 () | 869055..869419 | + | 365 | Protein_856 | IS3 family transposase IS911 | Transposase |
| M9379_RS04430 () | 869603..870790 | - | 1188 | WP_000937573.1 | IS91 family transposase ISEc37 | Transposase |
| M9379_RS04435 () | 870790..871155 | - | 366 | WP_000124119.1 | hypothetical protein | - |
| M9379_RS04440 () | 871240..872052 | + | 813 | Protein_859 | IS3 family transposase ISLad1 | Transposase |
| M9379_RS04445 () | 872252..872509 | + | 258 | Protein_860 | DUF2534 family protein | - |
| M9379_RS04450 () | 872559..873509 | - | 951 | WP_001262146.1 | universal stress protein UspE | - |
| M9379_RS04455 () | 873661..874413 | - | 753 | WP_000611911.1 | fumarate/nitrate reduction transcriptional regulator Fnr | - |
| M9379_RS04460 () | 874608..875123 | - | 516 | WP_000945011.1 | methylated-DNA--[protein]-cysteine S-methyltransferase | - |
| M9379_RS04465 () | 875134..875277 | - | 144 | Protein_864 | AbgT family transporter | - |
| M9379_RS04470 () | 875277..875493 | + | 217 | Protein_865 | LysR family transcriptional regulator | - |
| M9379_RS04475 () | 875667..876482 | - | 816 | WP_000156575.1 | helix-turn-helix transcriptional regulator | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|