MGE detailed information
MGE type: Prophage MGE length: 74698 bp
Accession: NZ_CP097834 Location: 645317..720014 Organism: Shigella flexneri strain C Replicon: chromosome
Accession: NZ_CP097834 Location: 645317..720014 Organism: Shigella flexneri strain C Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| M9379_RS03045 () | 641071..642141 | - | 1071 | WP_000108918.1 | histidinol-phosphate transaminase | - |
| M9379_RS03050 () | 642138..643442 | - | 1305 | WP_000009597.1 | histidinol dehydrogenase | - |
| M9379_RS03055 () | 643448..644347 | - | 900 | WP_000131772.1 | ATP phosphoribosyltransferase | - |
| M9379_RS03060 () | 644817..645089 | + | 273 | WP_001259256.1 | YoeB-YefM toxin-antitoxin system antitoxin YefM | - |
| M9379_RS03065 () | 645123..645820 | + | 698 | WP_232046035.1 | IS1 family transposase IS1X2 | Transposase |
| M9379_RS03070 () | 645842..646096 | + | 255 | WP_000767829.1 | type II toxin-antitoxin system mRNA interferase toxin YoeB | - |
| M9379_RS03075 () | 646179..647003 | + | 825 | WP_000754740.1 | SDR family oxidoreductase | - |
| M9379_RS03080 () | 647049..648032 | + | 984 | WP_000803326.1 | LysR substrate-binding domain-containing protein | - |
| M9379_RS03085 () | 648193..648255 | + | 63 | WP_097433929.1 | membrane protein YoeI | - |
| M9379_RS03090 () | 648245..649603 | + | 1359 | WP_000019203.1 | putrescine/proton symporter PlaP | - |
| M9379_RS03095 () | 649782..650840 | + | 1059 | WP_000492293.1 | thiosulfate utilization transporter TsuA/YeeE | - |
| M9379_RS03100 () | 650854..651081 | + | 228 | WP_000985273.1 | thiosulfate utilization sulfurtransferase TsuB/YeeD | - |
| M9379_RS03105 () | 651124..652548 | - | 1425 | WP_000132548.1 | exodeoxyribonuclease I | - |
| M9379_RS03110 () | 652730..653566 | + | 837 | Protein_611 | hypothetical protein ; Integrase | Integrase |
| M9379_RS03115 () | 653648..654322 | + | 675 | WP_004967157.1 | IS66 family transposase ISSfl3 | Transposase |
| M9379_RS03120 () | 654319..654669 | + | 351 | WP_005049241.1 | IS66 family transposase ISSfl3 | Transposase |
| M9379_RS03125 () | 654666..655571 | + | 906 | Protein_614 | IS66 family transposase ISSfl3 | Transposase |
| M9379_RS03130 () | 655661..656889 | + | 1229 | WP_171763412.1 | IS3 family transposase IS2 | Transposase |
| M9379_RS03135 () | 656902..657189 | + | 288 | Protein_616 | transposase | - |
| M9379_RS03140 () | 657254..658410 | + | 1157 | WP_128599137.1 | IS3 family transposase IS600 | Transposase |
| M9379_RS03145 () | 658473..659666 | - | 1194 | Protein_618 | IS66 family transposase ISSfl3 | Transposase |
| M9379_RS03150 () | 659663..659842 | - | 180 | Protein_619 | IS66 family insertion sequence element accessory protein TnpB | - |
| M9379_RS03155 () | 659898..661107 | + | 1210 | Protein_620 | IS3 family transposase IS629 | Transposase |
| M9379_RS03160 () | 661152..661322 | - | 171 | Protein_621 | IS66 family transposase ISSfl3 | Transposase |
| M9379_RS03165 () | 661319..661993 | - | 675 | WP_004967157.1 | IS66 family transposase ISSfl3 | Transposase |
| M9379_RS03170 () | 662078..662362 | + | 285 | Protein_623 | hypothetical protein | - |
| M9379_RS03175 () | 662534..662863 | + | 330 | WP_000450409.1 | DUF496 family protein | - |
| M9379_RS03180 () | 662964..663098 | - | 135 | WP_001297944.1 | EutP/PduV family microcompartment system protein | - |
| M9379_RS03185 () | 663200..663346 | + | 147 | Protein_626 | transposase domain-containing protein | - |
| M9379_RS03190 () | 663724..664933 | - | 1210 | Protein_627 | IS3 family transposase IS629 | Transposase |
| M9379_RS03195 () | 665176..666332 | + | 1157 | WP_094085527.1 | IS3 family transposase IS600 | Transposase |
| M9379_RS03200 () | 666344..666853 | + | 510 | WP_000261572.1 | bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase | - |
| M9379_RS03205 () | 666850..667593 | + | 744 | WP_005049317.1 | adenosylcobinamide-GDP ribazoletransferase | - |
| M9379_RS03210 () | 667605..668684 | + | 1080 | WP_001165576.1 | nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase | - |
| M9379_RS03215 () | 668746..669681 | + | 936 | WP_000986346.1 | L,D-transpeptidase | - |
| M9379_RS03225 () | 670140..671057 | + | 918 | WP_001011443.1 | nitrogen assimilation transcriptional regulator NAC | - |
| M9379_RS03230 () | 671159..672109 | + | 951 | WP_001010987.1 | HTH-type transcriptional regulator Cbl | - |
| M9379_RS03240 () | 672227..673854 | + | 1628 | Protein_635 | toxic metabolite efflux MATE transporter YeeO | - |
| M9379_RS03250 () | 674486..675202 | - | 717 | WP_000532920.1 | putative transcriptional regulatory protein YeeN | VF |
| M9379_RS03255 () | 675545..676999 | - | 1455 | WP_001060217.1 | AMP nucleosidase | - |
| M9379_RS03260 () | 677101..677307 | - | 207 | WP_000466572.1 | hypothetical protein | - |
| M9379_RS03265 () | 677308..678507 | - | 1200 | Protein_639 | IS3 family transposase IS600 | Transposase |
| M9379_RS03270 () | 678572..679060 | - | 489 | Protein_640 | MFS transporter | - |
| M9379_RS03275 () | 679134..680302 | + | 1169 | WP_128599161.1 | IS3 family transposase ISLad1 | Transposase |
| M9379_RS03280 () | 680409..681671 | - | 1263 | Protein_642 | Prophage integrase IntA ; Integrase | Integrase |
| M9379_RS03290 () | 682009..682806 | - | 798 | WP_024260703.1 | DgsA anti-repressor MtfA | - |
| M9379_RS03300 () | 683017..684057 | - | 1041 | WP_005096324.1 | Tyrosine recombinase XerC ; Integrase | Integrase |
| M9379_RS03305 () | 684057..684197 | - | 141 | Protein_645 | DUF4224 domain-containing protein | - |
| M9379_RS03310 () | 684224..684640 | + | 417 | WP_005069274.1 | hypothetical protein | - |
| - | 685222..685280 | - | 59 | - | - | Antitoxin Detail |
| M9379_RS03315 () | 685292..685447 | + | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | Toxin Detail |
| M9379_RS03320 () | 685615..685893 | + | 279 | WP_011069426.1 | hypothetical protein | - |
| M9379_RS03325 () | 685895..686953 | + | 1059 | WP_001265248.1 | DUF968 domain-containing protein | - |
| M9379_RS03330 () | 686954..687319 | + | 366 | WP_000140017.1 | RusA family crossover junction endodeoxyribonuclease | - |
| M9379_RS03335 () | 687316..688004 | + | 689 | Protein_651 | bacteriophage antitermination protein Q | - |
| M9379_RS03360 () | 688800..689015 | + | 216 | WP_000839572.1 | class II holin family protein | - |
| M9379_RS03365 () | 689114..689788 | + | 675 | WP_004967157.1 | IS66 family transposase ISSfl3 | Transposase |
| M9379_RS03370 () | 689785..690135 | + | 351 | WP_005049241.1 | IS66 family transposase ISSfl3 | Transposase |
| M9379_RS03375 () | 690132..690944 | + | 813 | Protein_655 | IS66 family transposase ISSfl3 | Transposase |
| M9379_RS03380 () | 691098..691421 | + | 324 | WP_000924704.1 | head-tail connector protein | - |
| M9379_RS03385 () | 691418..691834 | + | 417 | WP_000702444.1 | phage head closure protein | - |
| M9379_RS03390 () | 691800..692324 | + | 525 | WP_001076765.1 | hypothetical protein | - |
| M9379_RS03395 () | 692321..692545 | + | 225 | Protein_659 | hypothetical protein | - |
| M9379_RS03400 () | 692611..693767 | + | 1157 | WP_094081558.1 | IS3 family transposase IS600 | Transposase |
| M9379_RS03405 () | 693792..694151 | + | 360 | Protein_661 | hypothetical protein | - |
| M9379_RS03410 () | 694161..694322 | + | 162 | WP_000497744.1 | DUF2635 domain-containing protein | - |
| M9379_RS03415 () | 694319..695815 | + | 1497 | WP_000155744.1 | phage tail sheath subtilisin-like domain-containing protein | - |
| M9379_RS03420 () | 695815..696171 | + | 357 | WP_001062338.1 | phage tail tube protein | - |
| M9379_RS03425 () | 696171..696506 | + | 336 | WP_001251340.1 | phage tail assembly protein | - |
| M9379_RS03430 () | 696591..697892 | + | 1302 | Protein_666 | phage tail tape measure protein | - |
| M9379_RS03440 () | 699154..699807 | + | 654 | Protein_668 | phage tail tape measure protein | - |
| M9379_RS03445 () | 699875..700357 | + | 483 | WP_000594909.1 | hypothetical protein | - |
| M9379_RS03455 () | 701205..702062 | + | 858 | Protein_671 | IS3 family transposase IS600 | Transposase |
| M9379_RS03460 () | 702103..702582 | + | 480 | Protein_672 | DUF4376 domain-containing protein | - |
| M9379_RS03465 () | 702762..704405 | - | 1644 | WP_011110600.1 | E3 ubiquitin-protein ligase ipaH3 | VF |
| M9379_RS03470 () | 704721..705389 | - | 669 | WP_000239881.1 | class I SAM-dependent methyltransferase | - |
| M9379_RS03475 () | 705446..705715 | + | 270 | WP_000937511.1 | tail fiber assembly protein | - |
| M9379_RS03480 () | 706793..707443 | - | 651 | WP_001007781.1 | metal-binding protein ZinT | - |
| M9379_RS03485 () | 707701..708336 | - | 636 | WP_001240061.1 | protein-methionine-sulfoxide reductase heme-binding subunit MsrQ | - |
| M9379_RS03490 () | 708337..709341 | - | 1005 | Protein_678 | protein-methionine-sulfoxide reductase catalytic subunit MsrP | - |
| M9379_RS03495 () | 709450..709863 | - | 414 | WP_000920127.1 | hydroxyisourate hydrolase | - |
| M9379_RS03500 () | 709996..710667 | + | 672 | WP_001347103.1 | Transcriptional regulatory protein HprR | VF |
| M9379_RS03505 () | 710667..711614 | + | 948 | Protein_681 | two-component system sensor histidine kinase HprS | - |
| M9379_RS03515 () | 712951..713130 | - | 180 | Protein_683 | porin | - |
| M9379_RS03520 () | 713224..714452 | + | 1229 | WP_111778310.1 | IS3 family transposase IS2 | Transposase |
| M9379_RS03525 () | 714461..715225 | - | 765 | Protein_685 | porin | - |
| M9379_RS03530 () | 715291..715401 | + | 111 | Protein_686 | IS3 family transposase ISEhe3 | Transposase |
| M9379_RS03535 () | 715470..716638 | + | 1169 | WP_000747032.1 | IS3 family transposase ISLad1 | Transposase |
| M9379_RS03540 () | 716595..717691 | + | 1097 | WP_232046048.1 | IS3 family transposase ISEhe3 | Transposase |
| M9379_RS03545 () | 717692..717949 | + | 258 | WP_032155863.1 | cell division protein DrpB | - |
| M9379_RS03550 () | 717989..718529 | + | 541 | Protein_690 | phosphohydrolase | - |
| M9379_RS03555 () | 718596..720014 | + | 1419 | WP_001157215.1 | DNA-cytosine methyltransferase | - |
| M9379_RS03560 () | 719995..720465 | + | 471 | WP_000228688.1 | VSPR family DNA mismatch endonuclease | - |
| M9379_RS03565 () | 720454..721374 | - | 921 | WP_001212270.1 | drug/metabolite exporter YedA | - |
| M9379_RS03570 () | 721547..722464 | + | 918 | WP_000922688.1 | DUF808 domain-containing protein | - |
| M9379_RS03575 () | 722543..722725 | + | 183 | WP_000009302.1 | DUF2158 domain-containing protein | - |
| M9379_RS03580 () | 722896..724590 | + | 1695 | Protein_696 | cellulose biosynthesis regulator diguanylate cyclase DgcQ | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|