MGE detailed information
MGE type: Genomic_island MGE length: 21814 bp
Accession: NZ_CP097834 Location: 3688012..3709825 Organism: Shigella flexneri strain C Replicon: chromosome
Accession: NZ_CP097834 Location: 3688012..3709825 Organism: Shigella flexneri strain C Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| M9379_RS18560 (3683124) | 3683124..3683459 | + | 336 | WP_000626187.1 | universal stress protein UspB | - |
| M9379_RS18565 (3683530) | 3683530..3685029 | - | 1500 | WP_000902779.1 | inorganic phosphate transporter PitA | - |
| M9379_RS18570 (3685261) | 3685261..3686460 | + | 1200 | WP_000439213.1 | NAD(P)/FAD-dependent oxidoreductase | - |
| M9379_RS18575 (3686989) | 3686989..3687686 | + | 698 | WP_227804280.1 | IS1 family transposase | - |
| M9379_RS18580 (3687704) | 3687704..3687996 | - | 293 | Protein_3611 | transposase | - |
| M9379_RS18585 (3688012) | 3688012..3689286 | + | 1275 | WP_005052544.1 | O-antigen ligase family protein | - |
| M9379_RS18590 (3689286) | 3689286..3689960 | + | 675 | WP_000245839.1 | helix-turn-helix transcriptional regulator | - |
| M9379_RS18595 (3690488) | 3690488..3691249 | + | 762 | WP_005090407.1 | Chaperone protein caf1M | VF |
| M9379_RS18600 (3691293) | 3691293..3692372 | + | 1080 | WP_005052551.1 | F1 capsule-anchoring protein | VF |
| M9379_RS18610 (3693947) | 3693947..3694987 | + | 1041 | WP_005065168.1 | F1 capsule-anchoring protein | VF |
| M9379_RS18615 (3695038) | 3695038..3695735 | + | 698 | WP_225620329.1 | IS1 family transposase IS1X2 | Transposase |
| M9379_RS18620 (3695753) | 3695753..3695872 | + | 120 | Protein_3619 | fimbrial biogenesis outer membrane usher protein | - |
| M9379_RS18625 (3696011) | 3696011..3696523 | + | 513 | WP_000751953.1 | hypothetical protein | - |
| M9379_RS18630 (3696630) | 3696630..3697391 | - | 762 | WP_258248464.1 | hypothetical protein | VF |
| M9379_RS18635 (3697637) | 3697637..3698401 | + | 765 | WP_000442142.1 | winged helix-turn-helix domain-containing protein | - |
| M9379_RS18640 (3698394) | 3698394..3698870 | + | 477 | WP_000182502.1 | hypothetical protein | - |
| M9379_RS18645 (3698957) | 3698957..3699955 | - | 999 | Protein_3624 | DUF2776 family protein | - |
| M9379_RS18650 (3700373) | 3700373..3701962 | + | 1590 | WP_000643692.1 | DUF4049 domain-containing protein | - |
| M9379_RS18655 (3702224) | 3702224..3703846 | + | 1623 | WP_005065086.1 | DUF4049 domain-containing protein | - |
| M9379_RS18660 (3704036) | 3704036..3704149 | + | 114 | WP_001296785.1 | protein YhiY | - |
| M9379_RS18665 (3704212) | 3704212..3705279 | + | 1068 | WP_000361470.1 | HlyD family secretion protein | - |
| M9379_RS18670 (3705276) | 3705276..3708011 | + | 2736 | WP_000149172.1 | Ribosome-associated ATPase | VF |
| M9379_RS18675 (3708011) | 3708011..3709135 | + | 1125 | WP_001216257.1 | ABC transporter permease | - |
| M9379_RS18680 (3709194) | 3709194..3709469 | + | 276 | WP_025760846.1 | type II toxin-antitoxin system HicA family toxin | Toxin Detail |
| M9379_RS18685 (3709466) | 3709466..3709825 | + | 360 | WP_000593555.1 | type II toxin-antitoxin system HicB family antitoxin | Antitoxin Detail |
| M9379_RS18690 (3709945) | 3709945..3710346 | - | 402 | WP_001190062.1 | nickel-responsive transcriptional regulator NikR | - |
| M9379_RS18695 (3710352) | 3710352..3711158 | - | 807 | WP_000173660.1 | nickel import ATP-binding protein NikE | - |
| M9379_RS18700 (3711155) | 3711155..3711919 | - | 765 | WP_001136248.1 | nickel import ATP-binding protein NikD | - |
| M9379_RS18705 (3711919) | 3711919..3712752 | - | 834 | WP_001008974.1 | nickel ABC transporter permease subunit NikC | - |
| M9379_RS18710 (3712749) | 3712749..3713693 | - | 945 | WP_000947076.1 | nickel ABC transporter permease subunit NikB | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Shigella flexneri 5a str. M90T | Genomic island | TA120378 | NZ_CP037923 | 4222298..4243335 | 0.002 |