MGE detailed information
MGE type: Prophage MGE length: 47789 bp
Accession: NZ_CP097834 Location: 2424985..2472773 Organism: Shigella flexneri strain C Replicon: chromosome
Accession: NZ_CP097834 Location: 2424985..2472773 Organism: Shigella flexneri strain C Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| M9379_RS12535 (2420077) | 2420077..2420847 | - | 771 | WP_001139559.1 | 2-oxoglutaramate amidase | - |
| M9379_RS12540 (2421028) | 2421028..2421474 | + | 447 | WP_005100645.1 | Ivy family C-type lysozyme inhibitor | - |
| M9379_RS12545 (2421517) | 2421517..2423961 | - | 2445 | Protein_2446 | acyl-CoA dehydrogenase FadE | - |
| M9379_RS12550 (2424201) | 2424201..2424779 | + | 579 | WP_000284050.1 | D-sedoheptulose 7-phosphate isomerase | - |
| M9379_RS12555 (2424985) | 2424985..2425752 | + | 768 | WP_005060449.1 | class II glutamine amidotransferase | - |
| M9379_RS12560 (2425723) | 2425723..2426463 | - | 741 | WP_001225676.1 | peptidoglycan meso-diaminopimelic acid protein amidase | - |
| M9379_RS12565 (2426847) | 2426847..2427368 | + | 522 | Protein_2450 | hypothetical protein | VF |
| M9379_RS12570 (2427544) | 2427544..2428041 | + | 498 | WP_000006251.1 | REP-associated tyrosine transposase RayT | - |
| M9379_RS12575 (2428258) | 2428258..2429970 | - | 1713 | Protein_2452 | Flagellar biosynthesis protein FlhA | VF |
| M9379_RS12580 (2429942) | 2429942..2430727 | + | 786 | WP_000207560.1 | Chemotaxis protein LafU | VF |
| M9379_RS12585 (2430798) | 2430798..2431853 | + | 1056 | WP_001226172.1 | DNA polymerase IV | - |
| M9379_RS12590 (2431905) | 2431905..2432198 | + | 294 | WP_000554759.1 | type I toxin-antitoxin system antitoxin YafN | Antitoxin Detail |
| M9379_RS12595 (2432201) | 2432201..2432599 | + | 399 | WP_001263491.1 | type II toxin-antitoxin system mRNA interferase toxin YafO | Toxin Detail |
| M9379_RS12600 (2432609) | 2432609..2433061 | + | 453 | WP_001059846.1 | GNAT family N-acetyltransferase | - |
| M9379_RS12605 (2433307) | 2433307..2434350 | + | 1044 | WP_005060486.1 | RNA ligase RtcB family protein | - |
| M9379_RS12610 (2434412) | 2434412..2435026 | + | 615 | Protein_2459 | peptide chain release factor H | - |
| M9379_RS12615 (2435083) | 2435083..2436540 | - | 1458 | WP_001293009.1 | cytosol nonspecific dipeptidase | - |
| M9379_RS12620 (2436802) | 2436802..2437260 | + | 459 | WP_001291990.1 | xanthine phosphoribosyltransferase | - |
| - (2437856) | 2437856..2437936 | + | 81 | NuclAT_8 | - | - |
| - (2437856) | 2437856..2437936 | + | 81 | NuclAT_8 | - | - |
| - (2437856) | 2437856..2437936 | + | 81 | NuclAT_8 | - | - |
| - (2437856) | 2437856..2437936 | + | 81 | NuclAT_8 | - | - |
| M9379_RS12625 (2437352) | 2437352..2438596 | + | 1245 | WP_000189557.1 | esterase FrsA | - |
| M9379_RS12630 (2438654) | 2438654..2439055 | + | 402 | WP_000174678.1 | sigma factor-binding protein Crl | - |
| M9379_RS12635 (2439094) | 2439094..2440149 | - | 1056 | WP_000749864.1 | phosphoporin PhoE | - |
| M9379_RS12640 (2440325) | 2440325..2441022 | + | 698 | WP_227804295.1 | IS1 family transposase IS1X2 | Transposase |
| M9379_RS12645 (2441213) | 2441213..2442316 | + | 1104 | WP_001285281.1 | glutamate 5-kinase | - |
| M9379_RS12650 (2442328) | 2442328..2443581 | + | 1254 | WP_000893267.1 | glutamate-5-semialdehyde dehydrogenase | - |
| M9379_RS12660 (2443786) | 2443786..2444754 | - | 969 | Protein_2468 | Tyrosine recombinase XerD ; Integrase | Integrase |
| M9379_RS12670 (2446019) | 2446019..2446531 | + | 513 | Protein_2470 | hypothetical protein | - |
| M9379_RS12675 (2446503) | 2446503..2446943 | + | 441 | WP_001223320.1 | tail assembly chaperone | - |
| M9379_RS12680 (2447177) | 2447177..2448697 | - | 1521 | WP_228355687.1 | glycosyltransferase family 39 protein | - |
| M9379_RS12685 (2448700) | 2448700..2449620 | - | 921 | WP_000703663.1 | Prophage bactoprenol glucosyl transferase | VF |
| M9379_RS12690 (2449617) | 2449617..2449979 | - | 363 | WP_000915849.1 | Prophage bactoprenol-linked glucose translocase | VF |
| M9379_RS12695 (2450241) | 2450241..2450597 | - | 357 | Protein_2475 | integrase | - |
| M9379_RS12705 (2451962) | 2451962..2453171 | + | 1210 | Protein_2477 | IS3 family transposase IS629 | Transposase |
| M9379_RS12710 (2453155) | 2453155..2453514 | + | 360 | WP_000563002.1 | hypothetical protein | - |
| M9379_RS12715 (2453514) | 2453514..2453819 | + | 306 | WP_000206732.1 | protein YfdT | - |
| M9379_RS12720 (2453735) | 2453735..2454070 | + | 336 | WP_228355695.1 | IS607 family transposase ISSto13 | Transposase |
| M9379_RS12725 (2454051) | 2454051..2455219 | + | 1169 | WP_000747032.1 | IS3 family transposase ISLad1 | Transposase |
| M9379_RS12730 (2455251) | 2455251..2455538 | + | 288 | WP_000343120.1 | hypothetical protein | - |
| M9379_RS12740 (2457050) | 2457050..2457220 | + | 171 | WP_005053322.1 | FHA domain-containing protein | - |
| M9379_RS12745 (2457272) | 2457272..2457829 | + | 558 | WP_258249507.1 | type VI secretion system-associated protein TagK | - |
| M9379_RS12750 (2457816) | 2457816..2458646 | + | 831 | Protein_2486 | hypothetical protein | VF |
| M9379_RS12755 (2458643) | 2458643..2459137 | + | 495 | WP_001276640.1 | hypothetical protein | VF |
| M9379_RS12760 (2459153) | 2459153..2461036 | + | 1884 | WP_000371479.1 | type VI secretion system baseplate subunit TssF | - |
| M9379_RS12765 (2461033) | 2461033..2462018 | + | 986 | Protein_2489 | hypothetical protein | VF |
| M9379_RS12770 (2462029) | 2462029..2463075 | + | 1047 | WP_000402248.1 | hypothetical protein | VF |
| M9379_RS12780 (2463415) | 2463415..2464146 | - | 732 | WP_005060334.1 | DNA polymerase III subunit epsilon | - |
| M9379_RS12785 (2464211) | 2464211..2464678 | + | 468 | WP_000917883.1 | ribonuclease HI | - |
| M9379_RS12790 (2464675) | 2464675..2465397 | - | 723 | WP_005060310.1 | class I SAM-dependent methyltransferase | - |
| M9379_RS12795 (2465431) | 2465431..2466186 | + | 756 | WP_001052754.1 | hydroxyacylglutathione hydrolase | - |
| M9379_RS12800 (2466258) | 2466258..2467616 | + | 1359 | WP_000644678.1 | Membrane-bound lytic murein transglycosylase D | VF |
| M9379_RS12805 (2467664) | 2467664..2468434 | - | 771 | WP_000211683.1 | class I SAM-dependent methyltransferase | - |
| M9379_RS12810 (2468512) | 2468512..2469312 | - | 801 | WP_001230983.1 | endonuclease/exonuclease/phosphatase family protein | - |
| M9379_RS12815 (2469553) | 2469553..2470467 | + | 915 | WP_000648578.1 | HTH-type transcriptional regulator DmlR | VF |
| M9379_RS12820 (2470517) | 2470517..2471626 | + | 1110 | Protein_2499 | IS4 family transposase IS4 | Transposase |
| M9379_RS12825 (2471682) | 2471682..2472378 | + | 697 | WP_232046046.1 | IS1 family transposase IS1X2 | Transposase |
| M9379_RS12830 (2472394) | 2472394..2472639 | + | 246 | Protein_2501 | IS4 family transposase | - |
| M9379_RS12835 (2472678) | 2472678..2473481 | - | 804 | WP_000997035.1 | 2,5-didehydrogluconate reductase DkgB | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|