MGE detailed information
MGE type: Prophage MGE length: 93633 bp
Accession: NZ_CP097834 Location: 1972934..2066566 Organism: Shigella flexneri strain C Replicon: chromosome
Accession: NZ_CP097834 Location: 1972934..2066566 Organism: Shigella flexneri strain C Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| M9379_RS10095 (1969244) | 1969244..1969921 | - | 678 | WP_000044868.1 | dethiobiotin synthase | - |
| M9379_RS10100 (1969914) | 1969914..1970669 | - | 756 | WP_000246759.1 | malonyl-ACP O-methyltransferase BioC | - |
| M9379_RS10105 (1970656) | 1970656..1971810 | - | 1155 | WP_000118810.1 | 8-amino-7-oxononanoate synthase | - |
| M9379_RS10110 (1971807) | 1971807..1972847 | - | 1041 | WP_000951226.1 | biotin synthase BioB | - |
| M9379_RS10115 (1972934) | 1972934..1974223 | + | 1290 | WP_005048541.1 | Adenosylmethionine-8-amino-7-oxononanoate aminotransferase | VF |
| M9379_RS10120 (1974282) | 1974282..1974758 | + | 477 | WP_000767391.1 | kinase inhibitor | - |
| M9379_RS10125 (1975073) | 1975073..1975153 | + | 81 | Protein_1984 | hypothetical protein | - |
| M9379_RS10130 (1975163) | 1975163..1975249 | - | 87 | Protein_1985 | transposase | - |
| M9379_RS10135 (1975341) | 1975341..1977104 | + | 1764 | WP_000801162.1 | putative E3 ubiquitin-protein ligase ipaH4.5 | VF |
| M9379_RS10145 (1977284) | 1977284..1977907 | - | 624 | WP_000930145.1 | DUF4376 domain-containing protein | - |
| M9379_RS10150 (1977858) | 1977858..1979273 | - | 1416 | WP_000268794.1 | prophage tail fiber N-terminal domain-containing protein | - |
| M9379_RS10155 (1979337) | 1979337..1979936 | - | 600 | WP_001230368.1 | Outer membrane protein X | VF |
| M9379_RS10160 (1980004) | 1980004..1983484 | - | 3481 | Protein_1990 | host specificity protein J | - |
| M9379_RS10165 (1983545) | 1983545..1984120 | - | 576 | WP_005105520.1 | tail assembly protein | - |
| M9379_RS10170 (1984084) | 1984084..1984827 | - | 744 | WP_000194737.1 | C40 family peptidase | - |
| M9379_RS10175 (1984832) | 1984832..1985530 | - | 699 | WP_001152490.1 | phage minor tail protein L | - |
| M9379_RS10180 (1985530) | 1985530..1985859 | - | 330 | WP_000447264.1 | phage tail protein | - |
| M9379_RS10185 (1985859) | 1985859..1988597 | - | 2739 | WP_039064761.1 | phage tail tape measure protein | - |
| M9379_RS10190 (1988569) | 1988569..1988898 | - | 330 | WP_001161004.1 | phage tail assembly protein T | - |
| M9379_RS10195 (1988907) | 1988907..1989293 | - | 387 | WP_000478927.1 | phage minor tail protein G | - |
| M9379_RS10200 (1989352) | 1989352..1990092 | - | 741 | WP_000211126.1 | phage tail tube protein | - |
| M9379_RS10205 (1990103) | 1990103..1990504 | - | 402 | WP_001079406.1 | phage minor tail U family protein | - |
| M9379_RS10210 (1990501) | 1990501..1991085 | - | 585 | WP_000677140.1 | phage tail protein | - |
| M9379_RS10215 (1991072) | 1991072..1991449 | - | 378 | WP_000348593.1 | head-tail joining protein | - |
| M9379_RS10220 (1991461) | 1991461..1991847 | - | 387 | WP_000201488.1 | DNA-packaging protein FI | - |
| M9379_RS10225 (1991899) | 1991899..1992927 | - | 1029 | WP_000522637.1 | major capsid protein | - |
| M9379_RS10230 (1992985) | 1992985..1993332 | - | 348 | WP_000256830.1 | head decoration protein | - |
| M9379_RS10235 (1993369) | 1993369..1994874 | - | 1506 | WP_001254016.1 | S49 family peptidase | - |
| M9379_RS10240 (1994864) | 1994864..1996457 | - | 1594 | Protein_2006 | phage portal protein | - |
| M9379_RS10245 (1996454) | 1996454..1996657 | - | 204 | WP_000259004.1 | gpW family head-tail joining protein | - |
| M9379_RS10250 (1996641) | 1996641..1998569 | - | 1929 | WP_001026848.1 | phage terminase large subunit family protein | - |
| M9379_RS10255 (1998541) | 1998541..1998849 | - | 309 | Protein_2009 | terminase small subunit | - |
| M9379_RS10260 (1998892) | 1998892..1999931 | - | 1040 | Protein_2010 | IS3 family transposase IS600 | Transposase |
| M9379_RS10265 (1999987) | 1999987..2001196 | + | 1210 | Protein_2011 | IS3 family transposase IS629 | Transposase |
| M9379_RS10270 (2001248) | 2001248..2002254 | + | 1007 | Protein_2012 | IS3 family transposase ISSfl10 | Transposase |
| M9379_RS10275 (2002298) | 2002298..2002477 | - | 180 | Protein_2013 | Rha family transcriptional regulator | - |
| M9379_RS10280 (2002680) | 2002680..2003147 | - | 468 | WP_000092287.1 | lysis protein | - |
| M9379_RS10285 (2003144) | 2003144..2003677 | - | 534 | WP_001274722.1 | lysozyme | - |
| M9379_RS10290 (2003743) | 2003743..2004372 | - | 630 | WP_005094817.1 | hypothetical protein | - |
| M9379_RS10295 (2004376) | 2004376..2004591 | - | 216 | WP_000839566.1 | class II holin family protein | - |
| M9379_RS10320 (2005394) | 2005394..2005774 | - | 381 | WP_001204832.1 | antiterminator Q family protein | - |
| M9379_RS10325 (2005767) | 2005767..2005967 | - | 201 | WP_000111769.1 | protein ninH | - |
| M9379_RS10330 (2006062) | 2006062..2006319 | - | 258 | WP_001064799.1 | hypothetical protein | - |
| M9379_RS10335 (2006316) | 2006316..2007707 | - | 1392 | WP_000211324.1 | replicative DNA helicase | - |
| M9379_RS10340 (2007704) | 2007704..2008582 | - | 879 | WP_000988183.1 | ATP-binding protein | - |
| M9379_RS10345 (2008593) | 2008593..2009501 | - | 909 | WP_001247840.1 | hypothetical protein | - |
| M9379_RS10350 (2009488) | 2009488..2009721 | - | 234 | WP_000618004.1 | hypothetical protein | - |
| M9379_RS10355 (2009718) | 2009718..2010170 | - | 453 | WP_232046050.1 | Rha family transcriptional regulator | - |
| M9379_RS10360 (2010228) | 2010228..2010686 | - | 459 | WP_000961311.1 | ash family protein | - |
| M9379_RS10365 (2010699) | 2010699..2010929 | + | 231 | WP_005061113.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| M9379_RS10370 (2010919) | 2010919..2011227 | + | 309 | WP_000147081.1 | helix-turn-helix transcriptional regulator | Antitoxin Detail |
| M9379_RS10375 (2011269) | 2011269..2011445 | - | 177 | WP_001252556.1 | NinE family protein | - |
| M9379_RS10380 (2011442) | 2011442..2011852 | - | 411 | WP_000814621.1 | recombination protein NinB | - |
| M9379_RS10385 (2011849) | 2011849..2012127 | - | 279 | WP_005061104.1 | hypothetical protein | - |
| M9379_RS10390 (2012202) | 2012202..2012396 | - | 195 | Protein_2032 | hypothetical protein | - |
| M9379_RS10395 (2012466) | 2012466..2013634 | + | 1169 | WP_000747032.1 | IS3 family transposase ISLad1 | Transposase |
| M9379_RS10400 (2013764) | 2013764..2014893 | + | 1130 | WP_112361761.1 | IS3 family transposase ISSfl10 | Transposase |
| M9379_RS10405 (2014937) | 2014937..2015026 | - | 90 | Protein_2035 | phage holin | - |
| M9379_RS10430 (2016206) | 2016206..2016646 | - | 441 | Protein_2036 | DUF1133 family protein | - |
| M9379_RS10440 (2017902) | 2017902..2018012 | - | 111 | Protein_2038 | DUF1133 family protein | - |
| M9379_RS10445 (2018009) | 2018009..2018299 | - | 291 | WP_000228005.1 | DUF1364 domain-containing protein | - |
| M9379_RS10450 (2018299) | 2018299..2018532 | - | 234 | Protein_2040 | DUF1367 family protein | - |
| M9379_RS10455 (2018597) | 2018597..2019753 | + | 1157 | WP_094081518.1 | IS3 family transposase IS600 | Transposase |
| M9379_RS10460 (2019797) | 2019797..2020165 | - | 369 | Protein_2042 | DUF1367 family protein | - |
| M9379_RS10465 (2020204) | 2020204..2020491 | - | 288 | WP_000687442.1 | hypothetical protein | - |
| M9379_RS10470 (2020741) | 2020741..2020896 | - | 156 | WP_014532198.1 | type I toxin-antitoxin system toxin HokD | - |
| M9379_RS10475 (2021124) | 2021124..2021789 | - | 666 | WP_012421537.1 | epoxyqueuosine reductase QueH | - |
| M9379_RS10480 (2021958) | 2021958..2022314 | - | 357 | WP_005048249.1 | hypothetical protein | - |
| M9379_RS10485 (2022372) | 2022372..2022794 | - | 423 | WP_001118167.1 | DUF977 family protein | - |
| M9379_RS10490 (2022809) | 2022809..2023555 | - | 747 | Protein_2048 | ATP-binding protein | - |
| M9379_RS10495 (2023701) | 2023701..2024351 | - | 651 | WP_005107109.1 | hypothetical protein | - |
| M9379_RS10500 (2024429) | 2024429..2024851 | - | 423 | WP_000702036.1 | toxin YdaT family protein | - |
| M9379_RS10505 (2024835) | 2024835..2025062 | - | 228 | WP_000912291.1 | Cro/CI family transcriptional regulator | - |
| M9379_RS10510 (2025139) | 2025139..2025546 | + | 408 | WP_000787424.1 | helix-turn-helix domain-containing protein | - |
| M9379_RS10515 (2025749) | 2025749..2025904 | + | 156 | WP_001091985.1 | DUF1391 family protein | - |
| M9379_RS10520 (2025906) | 2025906..2026109 | + | 204 | WP_001005968.1 | hypothetical protein | - |
| M9379_RS10530 (2028127) | 2028127..2028975 | + | 849 | WP_000935590.1 | Rha family phage regulatory protein | - |
| M9379_RS10535 (2028992) | 2028992..2029273 | + | 282 | WP_001069001.1 | YdaE family protein | - |
| M9379_RS10540 (2029309) | 2029309..2029425 | + | 117 | Protein_2058 | hypothetical protein | - |
| M9379_RS10545 (2029489) | 2029489..2030618 | + | 1130 | WP_130862224.1 | IS3 family transposase ISSfl10 | Transposase |
| M9379_RS10550 (2030661) | 2030661..2031143 | - | 483 | Protein_2060 | hypothetical protein | - |
| M9379_RS10555 (2031167) | 2031167..2032335 | + | 1169 | WP_000747032.1 | IS3 family transposase ISLad1 | Transposase |
| M9379_RS10560 (2032345) | 2032345..2032539 | - | 195 | Protein_2062 | hypothetical protein | - |
| M9379_RS10565 (2032639) | 2032639..2032871 | - | 233 | Protein_2063 | hypothetical protein | - |
| M9379_RS10575 (2034104) | 2034104..2034721 | + | 618 | WP_005061679.1 | DUF4376 domain-containing protein | - |
| M9379_RS10585 (2034901) | 2034901..2036727 | - | 1827 | WP_011110560.1 | E3 ubiquitin-protein ligase ipaH3 | VF |
| M9379_RS10590 (2037218) | 2037218..2037307 | + | 90 | Protein_2067 | Tn3 family transposase TnpR_TnShfr1 | Transposase |
| M9379_RS10595 (2037609) | 2037609..2038604 | + | 996 | WP_000815445.1 | 6-phosphogluconolactonase | - |
| M9379_RS10600 (2038645) | 2038645..2039598 | - | 954 | Protein_2069 | LysR family transcriptional regulator | - |
| M9379_RS10605 (2039782) | 2039782..2040834 | + | 1053 | WP_000723619.1 | 4-oxalomesaconate tautomerase | - |
| M9379_RS10610 (2040910) | 2040910..2042343 | + | 1434 | WP_001036462.1 | anion permease | - |
| M9379_RS10615 (2042526) | 2042526..2044706 | + | 2181 | WP_000593952.1 | hydratase | - |
| M9379_RS10620 (2044847) | 2044847..2046130 | - | 1284 | WP_001091541.1 | putative acyl-CoA thioester hydrolase | - |
| M9379_RS10625 (2046265) | 2046265..2047206 | - | 942 | Protein_2074 | tyrosine-type recombinase/integrase | - |
| M9379_RS10635 (2048441) | 2048441..2048569 | + | 129 | Protein_2076 | phage holin | - |
| M9379_RS10640 (2048569) | 2048569..2048673 | + | 105 | Protein_2077 | lysozyme | - |
| M9379_RS10645 (2048746) | 2048746..2049914 | + | 1169 | WP_000747032.1 | IS3 family transposase ISLad1 | Transposase |
| M9379_RS10650 (2049920) | 2049920..2050168 | + | 249 | Protein_2079 | lysis system i-spanin subunit Rz | - |
| M9379_RS10655 (2050257) | 2050257..2050769 | - | 513 | WP_011069285.1 | VTT domain-containing protein | - |
| M9379_RS10660 (2050964) | 2050964..2051659 | + | 696 | WP_001108105.1 | hypothetical protein | - |
| M9379_RS10670 (2052906) | 2052906..2052980 | + | 75 | Protein_2083 | hypothetical protein | - |
| M9379_RS10675 (2052991) | 2052991..2053599 | + | 609 | Protein_2084 | PBSX family phage terminase large subunit | - |
| M9379_RS10680 (2053690) | 2053690..2054918 | + | 1229 | WP_094081542.1 | IS3 family transposase IS2 | Transposase |
| M9379_RS10685 (2054930) | 2054930..2055663 | + | 734 | Protein_2086 | PBSX family phage terminase large subunit | - |
| M9379_RS10690 (2055663) | 2055663..2057129 | + | 1467 | WP_000113500.1 | DUF1073 domain-containing protein | - |
| M9379_RS10695 (2057020) | 2057020..2057763 | + | 744 | WP_000184977.1 | phage minor head protein | - |
| M9379_RS10700 (2057767) | 2057767..2058987 | + | 1221 | WP_000873151.1 | DUF2213 domain-containing protein | - |
| M9379_RS10705 (2058991) | 2058991..2059480 | + | 490 | Protein_2090 | hypothetical protein | - |
| M9379_RS10710 (2059492) | 2059492..2060433 | + | 942 | WP_000627469.1 | DUF2184 domain-containing protein | - |
| M9379_RS10715 (2060430) | 2060430..2060705 | - | 276 | WP_011069283.1 | hypothetical protein | - |
| M9379_RS10725 (2061938) | 2061938..2063569 | - | 1632 | Protein_2094 | transposase domain-containing protein | - |
| M9379_RS10730 (2063544) | 2063544..2063780 | - | 237 | WP_014532185.1 | helix-turn-helix transcriptional regulator | - |
| M9379_RS10735 (2063952) | 2063952..2064461 | + | 510 | WP_000833599.1 | DNA-binding protein | - |
| M9379_RS10740 (2064799) | 2064799..2065140 | + | 342 | Protein_2097 | response regulator | - |
| M9379_RS10745 (2065181) | 2065181..2066566 | - | 1386 | WP_000955062.1 | anaerobic C4-dicarboxylate transporter DcuC | - |
| M9379_RS10750 (2067154) | 2067154..2067714 | + | 561 | WP_005049488.1 | lipid IV(A) palmitoyltransferase PagP | - |
| M9379_RS10755 (2067889) | 2067889..2068098 | + | 210 | WP_000034825.1 | transcription antiterminator/RNA stability regulator CspE | - |
| M9379_RS10760 (2068152) | 2068152..2068535 | - | 384 | WP_000939741.1 | fluoride efflux transporter CrcB | - |
| M9379_RS10765 (2068628) | 2068628..2069416 | + | 789 | WP_005049482.1 | deaminated glutathione amidase | - |
| M9379_RS10770 (2069545) | 2069545..2069748 | + | 204 | WP_000503931.1 | twin-arginine translocase subunit TatE | - |
| M9379_RS10775 (2069849) | 2069849..2070814 | - | 966 | WP_000042632.1 | lipoyl synthase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|