MGE detailed information
MGE type: Prophage MGE length: 52650 bp
Accession: NZ_CP097834 Location: 1300936..1353585 Organism: Shigella flexneri strain C Replicon: chromosome
Accession: NZ_CP097834 Location: 1300936..1353585 Organism: Shigella flexneri strain C Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| M9379_RS06620 () | 1296376..1297749 | + | 1374 | WP_001127218.1 | MFS transporter | - |
| M9379_RS06625 () | 1297795..1298676 | - | 882 | WP_000984517.1 | protease HtpX | - |
| M9379_RS06630 () | 1298868..1300916 | - | 2049 | WP_001055799.1 | carboxy terminal-processing peptidase | - |
| M9379_RS06635 () | 1300936..1301634 | - | 699 | WP_000431370.1 | RNA chaperone ProQ | - |
| M9379_RS06640 () | 1301731..1302228 | - | 498 | WP_001043881.1 | L-methionine (R)-S-oxide reductase | - |
| M9379_RS06645 () | 1302358..1303641 | + | 1284 | WP_001207281.1 | membrane integrity lipid transport subunit YebS | - |
| M9379_RS06650 () | 1303610..1306230 | + | 2621 | Protein_1298 | Intermembrane transport protein YebT | VF |
| M9379_RS06655 () | 1306310..1307749 | + | 1440 | WP_000057029.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| M9379_RS06660 () | 1307867..1308103 | + | 237 | WP_001295499.1 | YebV family protein | - |
| M9379_RS06665 () | 1308208..1308399 | + | 192 | WP_001296140.1 | YebW family protein | - |
| M9379_RS06670 () | 1308424..1308612 | - | 189 | Protein_1302 | serine/threonine-protein phosphatase | - |
| M9379_RS06680 () | 1309877..1310323 | - | 447 | Protein_1304 | metallophosphoesterase | - |
| M9379_RS06685 () | 1311074..1312780 | + | 1707 | WP_000936830.1 | E3 ubiquitin-protein ligase ipaH3 | VF |
| M9379_RS06690 () | 1312960..1313583 | - | 624 | WP_039064861.1 | DUF4376 domain-containing protein | - |
| M9379_RS06695 () | 1313534..1313701 | - | 168 | Protein_1307 | IS66 family transposase ISSfl3 | Transposase |
| M9379_RS06700 () | 1313703..1314083 | - | 381 | Protein_1308 | IS66 family transposase ISSfl3 | Transposase |
| M9379_RS06705 () | 1314593..1314829 | - | 237 | WP_001275006.1 | hypothetical protein | - |
| M9379_RS06710 () | 1315306..1316194 | + | 889 | Protein_1310 | Rha family transcriptional regulator | - |
| M9379_RS06715 () | 1316236..1317464 | + | 1229 | WP_134797556.1 | IS3 family transposase IS2 | Transposase |
| M9379_RS06720 () | 1317541..1317762 | + | 222 | WP_000560226.1 | killing protein KilR | - |
| M9379_RS06725 () | 1317762..1317932 | + | 171 | WP_001359121.1 | YdaE family protein | - |
| M9379_RS06730 () | 1318007..1318282 | + | 276 | WP_005049830.1 | hypothetical protein | - |
| M9379_RS06735 () | 1318382..1319797 | + | 1416 | Protein_1315 | exodeoxyribonuclease VIII | - |
| M9379_RS06745 () | 1321109..1321417 | + | 309 | WP_232046049.1 | host-nuclease inhibitor Gam family protein | - |
| M9379_RS06750 () | 1321398..1322566 | + | 1169 | WP_000747032.1 | IS3 family transposase ISLad1 | Transposase |
| M9379_RS06755 () | 1322676..1322915 | + | 240 | WP_000932577.1 | hypothetical protein | - |
| M9379_RS06760 () | 1322990..1324199 | + | 1210 | Protein_1320 | IS3 family transposase IS629 | Transposase |
| M9379_RS06765 () | 1324247..1324414 | + | 168 | WP_005049823.1 | excisionase family protein | - |
| M9379_RS06770 () | 1324416..1324586 | + | 171 | Protein_1322 | DUF3596 domain-containing protein | - |
| M9379_RS06780 () | 1325354..1325995 | + | 642 | Protein_1324 | Putative defective protein IntQ ; Integrase | Integrase |
| M9379_RS06785 () | 1326468..1327382 | + | 915 | WP_000555620.1 | putative periplasmic iron-binding protein | VF |
| M9379_RS06790 () | 1327382..1328209 | + | 828 | WP_000983722.1 | Manganese transport system ATP-binding protein MntB | VF |
| M9379_RS06795 () | 1328206..1329063 | + | 858 | WP_001101728.1 | Manganese transport system membrane protein MntB | ARG |
| M9379_RS06800 () | 1329060..1329917 | + | 858 | WP_000968134.1 | Manganese transport system membrane protein MntB | ARG |
| M9379_RS06805 () | 1330118..1330741 | - | 624 | WP_000930141.1 | DUF4376 domain-containing protein | - |
| M9379_RS06810 () | 1330692..1331881 | - | 1190 | Protein_1330 | prophage tail fiber N-terminal domain-containing protein | - |
| M9379_RS06815 () | 1331905..1332449 | - | 545 | Protein_1331 | tail fiber assembly protein | - |
| M9379_RS06820 () | 1332473..1332841 | - | 369 | WP_011069357.1 | hypothetical protein | - |
| M9379_RS06825 () | 1332869..1333774 | - | 906 | Protein_1333 | IS3 family transposase IS600 | Transposase |
| M9379_RS06835 () | 1334546..1334707 | - | 162 | Protein_1335 | Rha family transcriptional regulator | - |
| M9379_RS06840 () | 1335547..1335972 | - | 426 | Protein_1336 | hypothetical protein ; Integrase | Integrase |
| M9379_RS06845 () | 1336039..1337207 | + | 1169 | WP_000747032.1 | IS3 family transposase ISLad1 | Transposase |
| M9379_RS06870 () | 1337922..1338482 | - | 561 | WP_072075205.1 | ORF6N domain-containing protein | - |
| M9379_RS06880 () | 1339693..1339878 | - | 186 | WP_005049799.1 | hypothetical protein | - |
| M9379_RS06885 () | 1340019..1340573 | - | 555 | WP_000640143.1 | DUF1133 family protein | - |
| M9379_RS06890 () | 1340570..1340860 | - | 291 | WP_000228038.1 | DUF1364 domain-containing protein | - |
| M9379_RS06895 () | 1340860..1341459 | - | 600 | WP_000940329.1 | DUF1367 family protein | - |
| M9379_RS06900 () | 1341593..1342290 | + | 698 | WP_227804319.1 | IS1 family transposase IS1X2 | Transposase |
| M9379_RS06905 () | 1342796..1342951 | - | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | Toxin Detail |
| - | 1342963..1343021 | + | 59 | - | - | Antitoxin Detail |
| M9379_RS06910 () | 1343406..1343771 | - | 366 | WP_000610655.1 | DUF551 domain-containing protein | - |
| M9379_RS06915 () | 1343771..1344436 | - | 666 | WP_000208062.1 | hypothetical protein | - |
| M9379_RS06920 () | 1344433..1344798 | - | 366 | WP_001229298.1 | HNH endonuclease signature motif containing protein | - |
| M9379_RS06925 () | 1344800..1345018 | - | 219 | WP_000256998.1 | DUF4014 family protein | - |
| M9379_RS06930 () | 1345111..1345467 | - | 357 | WP_005048249.1 | hypothetical protein | - |
| M9379_RS06935 () | 1345525..1345947 | - | 423 | WP_001118167.1 | DUF977 family protein | - |
| M9379_RS06940 () | 1345962..1346705 | - | 744 | WP_000788999.1 | ATP-binding protein | - |
| M9379_RS06945 () | 1346851..1347020 | - | 170 | Protein_1353 | hypothetical protein | - |
| M9379_RS06950 () | 1347544..1348772 | + | 1229 | WP_134797556.1 | IS3 family transposase IS2 | Transposase |
| M9379_RS06955 () | 1348786..1349196 | - | 411 | Protein_1355 | YdaU family protein | - |
| M9379_RS06960 () | 1349300..1350456 | + | 1157 | WP_094081550.1 | IS3 family transposase IS600 | Transposase |
| M9379_RS06965 () | 1350501..1350935 | - | 435 | Protein_1357 | HTH-type transcriptional regulator PgrR | VF |
| M9379_RS06970 () | 1351073..1351993 | + | 921 | WP_000981715.1 | alpha/beta hydrolase | - |
| M9379_RS06975 () | 1351993..1352929 | + | 937 | Protein_1359 | alpha/beta hydrolase | - |
| M9379_RS06980 () | 1352947..1353585 | + | 639 | WP_005049763.1 | SDR family oxidoreductase | - |
| M9379_RS06985 () | 1353876..1354604 | + | 729 | WP_005061999.1 | murein tripeptide amidase MpaA | - |
| M9379_RS06990 () | 1354579..1355538 | - | 960 | WP_005062222.1 | L-Ala-D/L-Glu epimerase | - |
| M9379_RS06995 () | 1355657..1356163 | + | 507 | WP_000084387.1 | thiol peroxidase | - |
| M9379_RS07000 () | 1356207..1357748 | - | 1542 | WP_001306544.1 | transcriptional regulator TyrR | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|