MGE detailed information
MGE type: Prophage MGE length: 106702 bp
Accession: NZ_CP097831 Location: 4016965..4123666 Organism: Shigella flexneri strain D Replicon: chromosome
Accession: NZ_CP097831 Location: 4016965..4123666 Organism: Shigella flexneri strain D Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| M9381_RS20040 (4013275) | 4013275..4013952 | - | 678 | WP_000044868.1 | dethiobiotin synthase | - |
| M9381_RS20045 (4013945) | 4013945..4014700 | - | 756 | WP_000246759.1 | malonyl-ACP O-methyltransferase BioC | - |
| M9381_RS20050 (4014687) | 4014687..4015841 | - | 1155 | WP_000118810.1 | 8-amino-7-oxononanoate synthase | - |
| M9381_RS20055 (4015838) | 4015838..4016878 | - | 1041 | WP_000951226.1 | biotin synthase BioB | - |
| M9381_RS20060 (4016965) | 4016965..4018254 | + | 1290 | WP_005048541.1 | Adenosylmethionine-8-amino-7-oxononanoate aminotransferase | VF |
| M9381_RS20065 (4018313) | 4018313..4018789 | + | 477 | WP_000767391.1 | kinase inhibitor | - |
| M9381_RS20070 (4019104) | 4019104..4019184 | + | 81 | Protein_3915 | hypothetical protein | - |
| M9381_RS20075 (4019194) | 4019194..4019280 | - | 87 | Protein_3916 | transposase | - |
| M9381_RS20080 (4019372) | 4019372..4021135 | + | 1764 | WP_000801162.1 | putative E3 ubiquitin-protein ligase ipaH4.5 | VF |
| M9381_RS20090 (4021315) | 4021315..4021938 | - | 624 | WP_000930145.1 | DUF4376 domain-containing protein | - |
| M9381_RS20095 (4021889) | 4021889..4023304 | - | 1416 | WP_000268794.1 | prophage tail fiber N-terminal domain-containing protein | - |
| M9381_RS20100 (4023368) | 4023368..4023967 | - | 600 | WP_001230368.1 | Outer membrane protein X | VF |
| M9381_RS20105 (4024035) | 4024035..4027515 | - | 3481 | Protein_3921 | host specificity protein J | - |
| M9381_RS20110 (4027576) | 4027576..4028151 | - | 576 | WP_005105520.1 | tail assembly protein | - |
| M9381_RS20115 (4028115) | 4028115..4028858 | - | 744 | WP_000194737.1 | C40 family peptidase | - |
| M9381_RS20120 (4028863) | 4028863..4029561 | - | 699 | WP_001152490.1 | phage minor tail protein L | - |
| M9381_RS20125 (4029561) | 4029561..4029890 | - | 330 | WP_000447264.1 | phage tail protein | - |
| M9381_RS20130 (4029890) | 4029890..4032628 | - | 2739 | WP_039064761.1 | phage tail tape measure protein | - |
| M9381_RS20135 (4032600) | 4032600..4032929 | - | 330 | WP_001161004.1 | phage tail assembly protein T | - |
| M9381_RS20140 (4032938) | 4032938..4033324 | - | 387 | WP_000478927.1 | phage minor tail protein G | - |
| M9381_RS20145 (4033383) | 4033383..4034123 | - | 741 | WP_000211126.1 | phage tail tube protein | - |
| M9381_RS20150 (4034134) | 4034134..4034535 | - | 402 | WP_001079406.1 | phage minor tail U family protein | - |
| M9381_RS20155 (4034532) | 4034532..4035116 | - | 585 | WP_000677140.1 | phage tail protein | - |
| M9381_RS20160 (4035103) | 4035103..4035480 | - | 378 | WP_000348593.1 | head-tail joining protein | - |
| M9381_RS20165 (4035492) | 4035492..4035878 | - | 387 | WP_000201488.1 | DNA-packaging protein FI | - |
| M9381_RS20170 (4035930) | 4035930..4036958 | - | 1029 | WP_000522637.1 | major capsid protein | - |
| M9381_RS20175 (4037016) | 4037016..4037363 | - | 348 | WP_000256830.1 | head decoration protein | - |
| M9381_RS20180 (4037400) | 4037400..4038905 | - | 1506 | WP_001254016.1 | S49 family peptidase | - |
| M9381_RS20185 (4038895) | 4038895..4040488 | - | 1594 | Protein_3937 | phage portal protein | - |
| M9381_RS20190 (4040485) | 4040485..4040688 | - | 204 | WP_000259004.1 | gpW family head-tail joining protein | - |
| M9381_RS20195 (4040672) | 4040672..4042600 | - | 1929 | WP_001026848.1 | phage terminase large subunit family protein | - |
| M9381_RS20200 (4042572) | 4042572..4042880 | - | 309 | Protein_3940 | terminase small subunit | - |
| M9381_RS20205 (4042923) | 4042923..4043962 | - | 1040 | Protein_3941 | IS3 family transposase IS600 | Transposase |
| M9381_RS20210 (4044018) | 4044018..4045227 | + | 1210 | Protein_3942 | IS3 family transposase IS629 | Transposase |
| M9381_RS20215 (4045279) | 4045279..4046285 | + | 1007 | Protein_3943 | IS3 family transposase ISSfl10 | Transposase |
| M9381_RS20220 (4046329) | 4046329..4046508 | - | 180 | Protein_3944 | Rha family transcriptional regulator | - |
| M9381_RS20225 (4046711) | 4046711..4047178 | - | 468 | WP_000092287.1 | lysis protein | - |
| M9381_RS20230 (4047175) | 4047175..4047708 | - | 534 | WP_001274722.1 | lysozyme | - |
| M9381_RS20235 (4047774) | 4047774..4048403 | - | 630 | WP_005094817.1 | hypothetical protein | - |
| M9381_RS20240 (4048407) | 4048407..4048622 | - | 216 | WP_000839566.1 | class II holin family protein | - |
| M9381_RS20265 (4049425) | 4049425..4049805 | - | 381 | WP_001204832.1 | antiterminator Q family protein | - |
| M9381_RS20270 (4049798) | 4049798..4049998 | - | 201 | WP_000111769.1 | protein ninH | - |
| M9381_RS20275 (4050093) | 4050093..4050350 | - | 258 | WP_001064799.1 | hypothetical protein | - |
| M9381_RS20280 (4050347) | 4050347..4051738 | - | 1392 | WP_000211324.1 | replicative DNA helicase | - |
| M9381_RS20285 (4051735) | 4051735..4052613 | - | 879 | WP_000988183.1 | ATP-binding protein | - |
| M9381_RS20290 (4052624) | 4052624..4053532 | - | 909 | WP_001247840.1 | hypothetical protein | - |
| M9381_RS20295 (4053519) | 4053519..4053752 | - | 234 | WP_000618004.1 | hypothetical protein | - |
| M9381_RS20300 (4053749) | 4053749..4054201 | - | 453 | WP_232046050.1 | Rha family transcriptional regulator | - |
| M9381_RS20305 (4054259) | 4054259..4054717 | - | 459 | WP_000961311.1 | ash family protein | - |
| M9381_RS20310 (4054730) | 4054730..4054960 | + | 231 | WP_005061113.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| M9381_RS20315 (4054950) | 4054950..4055258 | + | 309 | WP_000147081.1 | helix-turn-helix transcriptional regulator | Antitoxin Detail |
| M9381_RS20320 (4055300) | 4055300..4055476 | - | 177 | WP_001252556.1 | NinE family protein | - |
| M9381_RS20325 (4055473) | 4055473..4055883 | - | 411 | WP_000814621.1 | recombination protein NinB | - |
| M9381_RS20330 (4055880) | 4055880..4056158 | - | 279 | WP_005061104.1 | hypothetical protein | - |
| M9381_RS20335 (4056233) | 4056233..4056427 | - | 195 | Protein_3963 | hypothetical protein | - |
| M9381_RS20340 (4056497) | 4056497..4057665 | + | 1169 | WP_000747032.1 | IS3 family transposase ISLad1 | Transposase |
| M9381_RS20345 (4057795) | 4057795..4058924 | + | 1130 | WP_112361761.1 | IS3 family transposase ISSfl10 | Transposase |
| M9381_RS20350 (4058968) | 4058968..4059057 | - | 90 | Protein_3966 | phage holin | - |
| M9381_RS20375 (4060237) | 4060237..4060677 | - | 441 | Protein_3967 | DUF1133 family protein | - |
| M9381_RS20385 (4061933) | 4061933..4062043 | - | 111 | Protein_3969 | DUF1133 family protein | - |
| M9381_RS20390 (4062040) | 4062040..4062330 | - | 291 | WP_000228005.1 | DUF1364 domain-containing protein | - |
| M9381_RS20395 (4062330) | 4062330..4062563 | - | 234 | Protein_3971 | DUF1367 family protein | - |
| M9381_RS20400 (4062628) | 4062628..4063784 | + | 1157 | WP_094081518.1 | IS3 family transposase IS600 | Transposase |
| M9381_RS20405 (4063828) | 4063828..4064196 | - | 369 | Protein_3973 | DUF1367 family protein | - |
| M9381_RS20410 (4064235) | 4064235..4064522 | - | 288 | WP_000687442.1 | hypothetical protein | - |
| M9381_RS20415 (4064772) | 4064772..4064927 | - | 156 | WP_014532198.1 | type I toxin-antitoxin system toxin HokD | - |
| M9381_RS20420 (4065155) | 4065155..4065820 | - | 666 | WP_012421537.1 | epoxyqueuosine reductase QueH | - |
| M9381_RS20425 (4065989) | 4065989..4066345 | - | 357 | WP_005048249.1 | hypothetical protein | - |
| M9381_RS20430 (4066403) | 4066403..4066825 | - | 423 | WP_001118167.1 | DUF977 family protein | - |
| M9381_RS20435 (4066840) | 4066840..4067586 | - | 747 | Protein_3979 | ATP-binding protein | - |
| M9381_RS20440 (4067732) | 4067732..4068382 | - | 651 | WP_005107109.1 | hypothetical protein | - |
| M9381_RS20445 (4068460) | 4068460..4068882 | - | 423 | WP_000702036.1 | toxin YdaT family protein | - |
| M9381_RS20450 (4068866) | 4068866..4069093 | - | 228 | WP_000912291.1 | Cro/CI family transcriptional regulator | - |
| M9381_RS20455 (4069170) | 4069170..4069577 | + | 408 | WP_000787424.1 | helix-turn-helix domain-containing protein | - |
| M9381_RS20460 (4069780) | 4069780..4069935 | + | 156 | WP_001091985.1 | DUF1391 family protein | - |
| M9381_RS20465 (4069937) | 4069937..4070140 | + | 204 | WP_001005968.1 | hypothetical protein | - |
| M9381_RS20475 (4072158) | 4072158..4073006 | + | 849 | WP_000935590.1 | Rha family phage regulatory protein | - |
| M9381_RS20480 (4073023) | 4073023..4073304 | + | 282 | WP_001069001.1 | YdaE family protein | - |
| M9381_RS20485 (4073340) | 4073340..4073456 | + | 117 | Protein_3989 | hypothetical protein | - |
| M9381_RS20490 (4073520) | 4073520..4074649 | + | 1130 | WP_130862224.1 | IS3 family transposase ISSfl10 | Transposase |
| M9381_RS20495 (4074692) | 4074692..4075174 | - | 483 | Protein_3991 | hypothetical protein | - |
| M9381_RS20500 (4075198) | 4075198..4076366 | + | 1169 | WP_000747032.1 | IS3 family transposase ISLad1 | Transposase |
| M9381_RS20505 (4076376) | 4076376..4076570 | - | 195 | Protein_3993 | hypothetical protein | - |
| M9381_RS20510 (4076670) | 4076670..4076902 | - | 233 | Protein_3994 | hypothetical protein | - |
| M9381_RS20520 (4078135) | 4078135..4078752 | + | 618 | WP_005061679.1 | DUF4376 domain-containing protein | - |
| M9381_RS20530 (4078932) | 4078932..4080758 | - | 1827 | WP_011110560.1 | E3 ubiquitin-protein ligase ipaH3 | VF |
| M9381_RS20535 (4081249) | 4081249..4081338 | + | 90 | Protein_3998 | Tn3 family transposase TnpR_TnShfr1 | Transposase |
| M9381_RS20540 (4081640) | 4081640..4082635 | + | 996 | WP_000815445.1 | 6-phosphogluconolactonase | - |
| M9381_RS20545 (4082676) | 4082676..4083629 | - | 954 | Protein_4000 | LysR family transcriptional regulator | - |
| M9381_RS20550 (4083813) | 4083813..4084865 | + | 1053 | WP_000723619.1 | 4-oxalomesaconate tautomerase | - |
| M9381_RS20555 (4084941) | 4084941..4086374 | + | 1434 | WP_001036462.1 | anion permease | - |
| M9381_RS20560 (4086557) | 4086557..4088737 | + | 2181 | WP_000593952.1 | hydratase | - |
| M9381_RS20565 (4088878) | 4088878..4090161 | - | 1284 | WP_001091541.1 | putative acyl-CoA thioester hydrolase | - |
| M9381_RS20570 (4090296) | 4090296..4091237 | - | 942 | Protein_4005 | tyrosine-type recombinase/integrase | - |
| M9381_RS20580 (4092472) | 4092472..4092600 | + | 129 | Protein_4007 | phage holin | - |
| M9381_RS20585 (4092600) | 4092600..4092704 | + | 105 | Protein_4008 | lysozyme | - |
| M9381_RS20590 (4092777) | 4092777..4093945 | + | 1169 | WP_000747032.1 | IS3 family transposase ISLad1 | Transposase |
| M9381_RS20595 (4093951) | 4093951..4094199 | + | 249 | Protein_4010 | lysis system i-spanin subunit Rz | - |
| M9381_RS20600 (4094288) | 4094288..4094800 | - | 513 | WP_011069285.1 | VTT domain-containing protein | - |
| M9381_RS20605 (4094995) | 4094995..4095690 | + | 696 | WP_001108105.1 | hypothetical protein | - |
| M9381_RS20615 (4096937) | 4096937..4097011 | + | 75 | Protein_4014 | hypothetical protein | - |
| M9381_RS20620 (4097022) | 4097022..4097630 | + | 609 | Protein_4015 | PBSX family phage terminase large subunit | - |
| M9381_RS20625 (4097721) | 4097721..4098949 | + | 1229 | WP_094081542.1 | IS3 family transposase IS2 | Transposase |
| M9381_RS20630 (4098961) | 4098961..4099694 | + | 734 | Protein_4017 | PBSX family phage terminase large subunit | - |
| M9381_RS20635 (4099694) | 4099694..4101160 | + | 1467 | WP_000113500.1 | DUF1073 domain-containing protein | - |
| M9381_RS20640 (4101051) | 4101051..4101794 | + | 744 | WP_000184977.1 | phage minor head protein | - |
| M9381_RS20645 (4101798) | 4101798..4103018 | + | 1221 | WP_000873151.1 | DUF2213 domain-containing protein | - |
| M9381_RS20650 (4103022) | 4103022..4103511 | + | 490 | Protein_4021 | hypothetical protein | - |
| M9381_RS20655 (4103523) | 4103523..4104464 | + | 942 | WP_000627469.1 | DUF2184 domain-containing protein | - |
| M9381_RS20660 (4104461) | 4104461..4104736 | - | 276 | WP_011069283.1 | hypothetical protein | - |
| M9381_RS20670 (4105969) | 4105969..4107600 | - | 1632 | Protein_4025 | transposase domain-containing protein | - |
| M9381_RS20675 (4107575) | 4107575..4107811 | - | 237 | WP_014532185.1 | helix-turn-helix transcriptional regulator | - |
| M9381_RS20680 (4107983) | 4107983..4108492 | + | 510 | WP_000833599.1 | DNA-binding protein | - |
| M9381_RS20685 (4108830) | 4108830..4109171 | + | 342 | Protein_4028 | response regulator | - |
| M9381_RS20690 (4109212) | 4109212..4110597 | - | 1386 | WP_000955062.1 | anaerobic C4-dicarboxylate transporter DcuC | - |
| M9381_RS20695 (4111185) | 4111185..4111745 | + | 561 | WP_005049488.1 | lipid IV(A) palmitoyltransferase PagP | - |
| M9381_RS20700 (4111920) | 4111920..4112129 | + | 210 | WP_000034825.1 | transcription antiterminator/RNA stability regulator CspE | - |
| M9381_RS20705 (4112183) | 4112183..4112566 | - | 384 | WP_000939741.1 | fluoride efflux transporter CrcB | - |
| M9381_RS20710 (4112659) | 4112659..4113447 | + | 789 | WP_005049482.1 | deaminated glutathione amidase | - |
| M9381_RS20715 (4113576) | 4113576..4113779 | + | 204 | WP_000503931.1 | twin-arginine translocase subunit TatE | - |
| M9381_RS20720 (4113880) | 4113880..4114845 | - | 966 | WP_000042632.1 | lipoyl synthase | - |
| M9381_RS20725 (4115054) | 4115054..4116007 | - | 954 | WP_000378035.1 | YbeF family transcriptional regulator | - |
| M9381_RS20730 (4116266) | 4116266..4116907 | - | 642 | WP_000284045.1 | lipoyl(octanoyl) transferase LipB | - |
| M9381_RS20735 (4117008) | 4117008..4117271 | - | 264 | WP_000850550.1 | DUF493 family protein YbeD | - |
| M9381_RS20740 (4117382) | 4117382..4118593 | - | 1212 | WP_001092085.1 | D-alanyl-D-alanine carboxypeptidase DacA | - |
| M9381_RS20745 (4118732) | 4118732..4119820 | - | 1089 | WP_001231406.1 | endolytic peptidoglycan transglycosylase RlpA | - |
| M9381_RS20750 (4119831) | 4119831..4120943 | - | 1113 | WP_000131719.1 | peptidoglycan glycosyltransferase MrdB | - |
| M9381_RS20755 (4120946) | 4120946..4122847 | - | 1902 | WP_000776197.1 | peptidoglycan DD-transpeptidase MrdA | - |
| M9381_RS20760 (4122878) | 4122878..4123345 | - | 468 | WP_000776104.1 | 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH | - |
| M9381_RS20765 (4123349) | 4123349..4123666 | - | 318 | WP_001161664.1 | ribosome silencing factor | - |
| M9381_RS20770 (4123926) | 4123926..4124528 | - | 603 | WP_075332657.1 | adenosylcobalamin/alpha-ribazole phosphatase | - |
| M9381_RS20775 (4124552) | 4124552..4125193 | - | 642 | WP_000838889.1 | nicotinate-nucleotide adenylyltransferase | - |
| M9381_RS20780 (4125195) | 4125195..4126226 | - | 1032 | WP_258247919.1 | DNA polymerase III subunit delta | - |
| M9381_RS20785 (4126226) | 4126226..4126807 | - | 582 | WP_001269672.1 | LPS assembly lipoprotein LptE | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|