MGE detailed information
MGE type: Prophage MGE length: 52651 bp
Accession: NZ_CP097831 Location: 3344967..3397617 Organism: Shigella flexneri strain D Replicon: chromosome
Accession: NZ_CP097831 Location: 3344967..3397617 Organism: Shigella flexneri strain D Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| M9381_RS16565 () | 3340407..3341780 | + | 1374 | WP_001127218.1 | MFS transporter | - |
| M9381_RS16570 () | 3341826..3342707 | - | 882 | WP_000984517.1 | protease HtpX | - |
| M9381_RS16575 () | 3342899..3344947 | - | 2049 | WP_001055799.1 | carboxy terminal-processing peptidase | - |
| M9381_RS16580 () | 3344967..3345665 | - | 699 | WP_000431370.1 | RNA chaperone ProQ | - |
| M9381_RS16585 () | 3345762..3346259 | - | 498 | WP_001043881.1 | L-methionine (R)-S-oxide reductase | - |
| M9381_RS16590 () | 3346389..3347672 | + | 1284 | WP_001207281.1 | membrane integrity lipid transport subunit YebS | - |
| M9381_RS16595 () | 3347641..3350261 | + | 2621 | Protein_3229 | Intermembrane transport protein YebT | VF |
| M9381_RS16600 () | 3350341..3351780 | + | 1440 | WP_000057029.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| M9381_RS16605 () | 3351898..3352134 | + | 237 | WP_001295499.1 | YebV family protein | - |
| M9381_RS16610 () | 3352239..3352430 | + | 192 | WP_001296140.1 | YebW family protein | - |
| M9381_RS16615 () | 3352455..3352643 | - | 189 | Protein_3233 | serine/threonine-protein phosphatase | - |
| M9381_RS16625 () | 3353908..3354354 | - | 447 | Protein_3235 | metallophosphoesterase | - |
| M9381_RS16630 () | 3355105..3356811 | + | 1707 | WP_000936830.1 | E3 ubiquitin-protein ligase ipaH3 | VF |
| M9381_RS16635 () | 3356991..3357614 | - | 624 | WP_039064861.1 | DUF4376 domain-containing protein | - |
| M9381_RS16640 () | 3357565..3357732 | - | 168 | Protein_3238 | IS66 family transposase ISSfl3 | Transposase |
| M9381_RS16645 () | 3357734..3358114 | - | 381 | Protein_3239 | IS66 family transposase ISSfl3 | Transposase |
| M9381_RS16650 () | 3358624..3358860 | - | 237 | WP_001275006.1 | hypothetical protein | - |
| M9381_RS16655 () | 3359337..3360225 | + | 889 | Protein_3241 | Rha family transcriptional regulator | - |
| M9381_RS16660 () | 3360267..3361495 | + | 1229 | WP_134797556.1 | IS3 family transposase IS2 | Transposase |
| M9381_RS16665 () | 3361572..3361793 | + | 222 | WP_000560226.1 | killing protein KilR | - |
| M9381_RS16670 () | 3361793..3361963 | + | 171 | WP_001359121.1 | YdaE family protein | - |
| M9381_RS16675 () | 3362038..3362313 | + | 276 | WP_005049830.1 | hypothetical protein | - |
| M9381_RS16680 () | 3362413..3363828 | + | 1416 | Protein_3246 | exodeoxyribonuclease VIII | - |
| M9381_RS16690 () | 3365140..3365448 | + | 309 | WP_232046049.1 | host-nuclease inhibitor Gam family protein | - |
| M9381_RS16695 () | 3365429..3366597 | + | 1169 | WP_000747032.1 | IS3 family transposase ISLad1 | Transposase |
| M9381_RS16700 () | 3366764..3366946 | + | 183 | WP_252706320.1 | hypothetical protein | - |
| M9381_RS16705 () | 3367021..3368230 | + | 1210 | Protein_3251 | IS3 family transposase IS629 | Transposase |
| M9381_RS16710 () | 3368278..3368445 | + | 168 | WP_005049823.1 | excisionase family protein | - |
| M9381_RS16715 () | 3368447..3368617 | + | 171 | Protein_3253 | DUF3596 domain-containing protein | - |
| M9381_RS16725 () | 3369385..3370026 | + | 642 | Protein_3255 | Putative defective protein IntQ ; Integrase | Integrase |
| M9381_RS16730 () | 3370499..3371413 | + | 915 | WP_000555620.1 | putative periplasmic iron-binding protein | VF |
| M9381_RS16735 () | 3371413..3372240 | + | 828 | WP_000983722.1 | Manganese transport system ATP-binding protein MntB | VF |
| M9381_RS16740 () | 3372237..3373094 | + | 858 | WP_001101728.1 | Manganese transport system membrane protein MntB | ARG |
| M9381_RS16745 () | 3373091..3373948 | + | 858 | WP_000968134.1 | Manganese transport system membrane protein MntB | ARG |
| M9381_RS16750 () | 3374149..3374772 | - | 624 | WP_000930141.1 | DUF4376 domain-containing protein | - |
| M9381_RS16755 () | 3374723..3375912 | - | 1190 | Protein_3261 | prophage tail fiber N-terminal domain-containing protein | - |
| M9381_RS16760 () | 3375936..3376480 | - | 545 | Protein_3262 | tail fiber assembly protein | - |
| M9381_RS16765 () | 3376504..3376872 | - | 369 | WP_011069357.1 | hypothetical protein | - |
| M9381_RS16770 () | 3376900..3377805 | - | 906 | Protein_3264 | IS3 family transposase IS600 | Transposase |
| M9381_RS16780 () | 3378577..3378738 | - | 162 | Protein_3266 | Rha family transcriptional regulator | - |
| M9381_RS16785 () | 3379578..3380003 | - | 426 | Protein_3267 | hypothetical protein ; Integrase | Integrase |
| M9381_RS16790 () | 3380070..3381238 | + | 1169 | WP_000747032.1 | IS3 family transposase ISLad1 | Transposase |
| M9381_RS16815 () | 3381953..3382513 | - | 561 | WP_072075205.1 | ORF6N domain-containing protein | - |
| M9381_RS16825 () | 3383724..3383909 | - | 186 | WP_005049799.1 | hypothetical protein | - |
| M9381_RS16830 () | 3384050..3384604 | - | 555 | WP_000640143.1 | DUF1133 family protein | - |
| M9381_RS16835 () | 3384601..3384891 | - | 291 | WP_000228038.1 | DUF1364 domain-containing protein | - |
| M9381_RS16840 () | 3384891..3385490 | - | 600 | WP_000940329.1 | DUF1367 family protein | - |
| M9381_RS16845 () | 3385624..3386321 | + | 698 | WP_227804319.1 | IS1 family transposase IS1X2 | Transposase |
| M9381_RS16850 () | 3386827..3386982 | - | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | Toxin Detail |
| - | 3386994..3387052 | + | 59 | - | - | Antitoxin Detail |
| M9381_RS16855 () | 3387437..3387802 | - | 366 | WP_000610655.1 | DUF551 domain-containing protein | - |
| M9381_RS16860 () | 3387802..3388467 | - | 666 | WP_000208062.1 | hypothetical protein | - |
| M9381_RS16865 () | 3388464..3388829 | - | 366 | WP_001229298.1 | HNH endonuclease signature motif containing protein | - |
| M9381_RS16870 () | 3388831..3389049 | - | 219 | WP_000256998.1 | DUF4014 family protein | - |
| M9381_RS16875 () | 3389142..3389498 | - | 357 | WP_005048249.1 | hypothetical protein | - |
| M9381_RS16880 () | 3389556..3389978 | - | 423 | WP_001118167.1 | DUF977 family protein | - |
| M9381_RS16885 () | 3389993..3390736 | - | 744 | WP_000788999.1 | ATP-binding protein | - |
| M9381_RS16890 () | 3390882..3391051 | - | 170 | Protein_3284 | hypothetical protein | - |
| M9381_RS16895 () | 3391575..3392803 | + | 1229 | WP_134797556.1 | IS3 family transposase IS2 | Transposase |
| M9381_RS16900 () | 3392817..3393227 | - | 411 | Protein_3286 | YdaU family protein | - |
| M9381_RS16905 () | 3393331..3394487 | + | 1157 | WP_094081550.1 | IS3 family transposase IS600 | Transposase |
| M9381_RS16910 () | 3394532..3394966 | - | 435 | Protein_3288 | HTH-type transcriptional regulator PgrR | VF |
| M9381_RS16915 () | 3395104..3396024 | + | 921 | WP_000981715.1 | alpha/beta hydrolase | - |
| M9381_RS16920 () | 3396024..3396961 | + | 938 | Protein_3290 | alpha/beta hydrolase | - |
| M9381_RS16925 () | 3396979..3397617 | + | 639 | WP_005049763.1 | SDR family oxidoreductase | - |
| M9381_RS16930 () | 3397908..3398636 | + | 729 | WP_005061999.1 | murein tripeptide amidase MpaA | - |
| M9381_RS16935 () | 3398611..3399570 | - | 960 | WP_005062222.1 | L-Ala-D/L-Glu epimerase | - |
| M9381_RS16940 () | 3399689..3400195 | + | 507 | WP_000084387.1 | thiol peroxidase | - |
| M9381_RS16945 () | 3400239..3401780 | - | 1542 | WP_001306544.1 | transcriptional regulator TyrR | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|