MGE detailed information
MGE type: Prophage MGE length: 62674 bp
Accession: NZ_CP097828 Location: 3993015..4055688 Organism: Shigella flexneri strain E Replicon: chromosome
Accession: NZ_CP097828 Location: 3993015..4055688 Organism: Shigella flexneri strain E Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| M9383_RS19985 () | 3988852..3990393 | + | 1542 | WP_001306544.1 | transcriptional regulator TyrR | - |
| M9383_RS19990 () | 3990437..3990943 | - | 507 | WP_000084387.1 | thiol peroxidase | - |
| M9383_RS19995 () | 3991062..3992021 | + | 960 | WP_005062222.1 | L-Ala-D/L-Glu epimerase | - |
| M9383_RS20000 () | 3991996..3992724 | - | 729 | WP_005061999.1 | murein tripeptide amidase MpaA | - |
| M9383_RS20005 () | 3993015..3993653 | - | 639 | WP_005049763.1 | SDR family oxidoreductase | - |
| M9383_RS20010 () | 3993671..3994609 | - | 939 | Protein_3885 | alpha/beta hydrolase | - |
| M9383_RS20015 () | 3994609..3995529 | - | 921 | WP_000981715.1 | alpha/beta hydrolase | - |
| M9383_RS20020 () | 3995667..3996101 | + | 435 | Protein_3887 | HTH-type transcriptional regulator PgrR | VF |
| M9383_RS20030 () | 3997406..3997816 | + | 411 | Protein_3889 | YdaU family protein | - |
| M9383_RS20040 () | 3999582..3999751 | + | 170 | Protein_3891 | hypothetical protein | - |
| M9383_RS20045 () | 3999897..4000640 | + | 744 | WP_000788999.1 | ATP-binding protein | - |
| M9383_RS20050 () | 4000655..4001077 | + | 423 | WP_001118167.1 | DUF977 family protein | - |
| M9383_RS20055 () | 4001135..4001491 | + | 357 | WP_005048249.1 | hypothetical protein | - |
| M9383_RS20060 () | 4001584..4001802 | + | 219 | WP_000256998.1 | DUF4014 family protein | - |
| M9383_RS20065 () | 4001804..4002169 | + | 366 | WP_001229298.1 | HNH endonuclease signature motif containing protein | - |
| M9383_RS20070 () | 4002166..4002831 | + | 666 | WP_000208062.1 | hypothetical protein | - |
| M9383_RS20075 () | 4002831..4003196 | + | 366 | WP_000610655.1 | DUF551 domain-containing protein | - |
| - | 4003581..4003639 | - | 59 | - | - | Antitoxin Detail |
| M9383_RS20080 () | 4003651..4003806 | + | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | Toxin Detail |
| M9383_RS20090 () | 4005143..4005742 | + | 600 | WP_000940329.1 | DUF1367 family protein | - |
| M9383_RS20095 () | 4005742..4006032 | + | 291 | WP_000228038.1 | DUF1364 domain-containing protein | - |
| M9383_RS20100 () | 4006029..4006583 | + | 555 | WP_000640143.1 | DUF1133 family protein | - |
| M9383_RS20105 () | 4006736..4006909 | + | 174 | WP_000504450.1 | hypothetical protein | - |
| M9383_RS20110 () | 4006971..4008127 | + | 1157 | WP_094081550.1 | IS3 family transposase IS600 | Transposase |
| M9383_RS20115 () | 4008120..4008680 | + | 561 | WP_072075205.1 | ORF6N domain-containing protein | - |
| M9383_RS20145 () | 4010630..4011055 | + | 426 | Protein_3908 | hypothetical protein ; Integrase | Integrase |
| M9383_RS20150 () | 4011895..4012056 | + | 162 | Protein_3909 | Rha family transcriptional regulator | - |
| M9383_RS20155 () | 4012115..4012812 | + | 698 | WP_227804319.1 | IS1 family transposase IS1X2 | Transposase |
| M9383_RS20160 () | 4012828..4013733 | + | 906 | Protein_3911 | IS3 family transposase IS600 | Transposase |
| M9383_RS20165 () | 4013761..4014129 | + | 369 | WP_011069357.1 | hypothetical protein | - |
| M9383_RS20170 () | 4014153..4014697 | + | 545 | Protein_3913 | tail fiber assembly protein | - |
| M9383_RS20175 () | 4014721..4015910 | + | 1190 | Protein_3914 | prophage tail fiber N-terminal domain-containing protein | - |
| M9383_RS20180 () | 4015861..4016484 | + | 624 | WP_000930141.1 | DUF4376 domain-containing protein | - |
| M9383_RS20185 () | 4016685..4017542 | - | 858 | WP_000968134.1 | Manganese transport system membrane protein MntB | ARG |
| M9383_RS20190 () | 4017539..4018396 | - | 858 | WP_001101728.1 | Manganese transport system membrane protein MntB | ARG |
| M9383_RS20195 () | 4018393..4019220 | - | 828 | WP_258247959.1 | Manganese transport system ATP-binding protein MntB | VF |
| M9383_RS20200 () | 4019220..4020134 | - | 915 | WP_000555620.1 | putative periplasmic iron-binding protein | VF |
| M9383_RS20205 () | 4020607..4021248 | - | 642 | Protein_3920 | Putative defective protein IntQ ; Integrase | Integrase |
| M9383_RS20210 () | 4021302..4021999 | + | 698 | WP_252968685.1 | IS1 family transposase IS1X2 | Transposase |
| M9383_RS20215 () | 4022016..4022186 | - | 171 | Protein_3922 | DUF3596 domain-containing protein | - |
| M9383_RS20220 () | 4022188..4022355 | - | 168 | WP_005049823.1 | excisionase family protein | - |
| M9383_RS20225 () | 4022403..4023612 | - | 1210 | Protein_3924 | IS3 family transposase IS629 | Transposase |
| M9383_RS20230 () | 4023687..4023926 | - | 240 | WP_000932577.1 | hypothetical protein | - |
| M9383_RS20240 () | 4025185..4025493 | - | 309 | WP_232046049.1 | host-nuclease inhibitor Gam family protein | - |
| M9383_RS20245 () | 4025592..4026748 | + | 1157 | WP_094190485.1 | IS3 family transposase IS600 | Transposase |
| M9383_RS20250 () | 4026805..4028220 | - | 1416 | Protein_3929 | exodeoxyribonuclease VIII | - |
| M9383_RS20255 () | 4028320..4028595 | - | 276 | WP_005049830.1 | hypothetical protein | - |
| M9383_RS20260 () | 4028670..4028840 | - | 171 | WP_001359121.1 | YdaE family protein | - |
| M9383_RS20265 () | 4028840..4029061 | - | 222 | WP_000560226.1 | killing protein KilR | - |
| M9383_RS20275 () | 4030408..4031296 | - | 889 | Protein_3934 | Rha family transcriptional regulator | - |
| M9383_RS20280 () | 4031773..4032009 | + | 237 | WP_001275006.1 | hypothetical protein | - |
| M9383_RS20285 () | 4032519..4032899 | + | 381 | Protein_3936 | IS66 family transposase ISSfl3 | Transposase |
| M9383_RS20290 () | 4032901..4033068 | + | 168 | Protein_3937 | IS66 family transposase ISSfl3 | Transposase |
| M9383_RS20295 () | 4033019..4033642 | + | 624 | WP_039064861.1 | DUF4376 domain-containing protein | - |
| M9383_RS20300 () | 4033822..4035528 | - | 1707 | WP_000936830.1 | E3 ubiquitin-protein ligase ipaH3 | VF |
| M9383_RS20305 () | 4036279..4036725 | + | 447 | Protein_3940 | metallophosphoesterase | - |
| M9383_RS20310 () | 4036790..4037946 | + | 1157 | WP_094081550.1 | IS3 family transposase IS600 | Transposase |
| M9383_RS20315 () | 4037990..4038178 | + | 189 | Protein_3942 | serine/threonine-protein phosphatase | - |
| M9383_RS20320 () | 4038203..4038394 | - | 192 | WP_001296140.1 | YebW family protein | - |
| M9383_RS20325 () | 4038499..4038735 | - | 237 | WP_001295499.1 | YebV family protein | - |
| M9383_RS20330 () | 4038853..4040292 | - | 1440 | WP_000057029.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| M9383_RS20335 () | 4040372..4042992 | - | 2621 | Protein_3946 | Intermembrane transport protein YebT | VF |
| M9383_RS20340 () | 4042961..4044244 | - | 1284 | WP_001207281.1 | membrane integrity lipid transport subunit YebS | - |
| M9383_RS20345 () | 4044374..4044871 | + | 498 | WP_001043881.1 | L-methionine (R)-S-oxide reductase | - |
| M9383_RS20350 () | 4044968..4045666 | + | 699 | WP_000431370.1 | RNA chaperone ProQ | - |
| M9383_RS20355 () | 4045686..4047734 | + | 2049 | WP_001055799.1 | carboxy terminal-processing peptidase | - |
| M9383_RS20360 () | 4047926..4048807 | + | 882 | WP_000984517.1 | protease HtpX | - |
| M9383_RS20365 () | 4048853..4050226 | - | 1374 | WP_001127218.1 | MFS transporter | - |
| M9383_RS20370 () | 4050403..4051194 | + | 792 | WP_001262181.1 | DNA-binding transcriptional regulator KdgR | - |
| M9383_RS20375 () | 4051337..4051576 | - | 240 | WP_001211010.1 | YobH family protein | - |
| M9383_RS20380 () | 4051735..4051878 | + | 144 | WP_000714550.1 | PhoP/PhoQ regulator MgrB | - |
| M9383_RS20385 () | 4051953..4052240 | + | 288 | WP_001006860.1 | YebO family protein | - |
| M9383_RS20390 () | 4052819..4052962 | + | 144 | WP_001295496.1 | DUF2627 domain-containing protein | - |
| M9383_RS20395 () | 4052975..4053184 | + | 210 | WP_001062678.1 | transcription antiterminator/RNA stability regulator CspE | - |
| M9383_RS20400 () | 4053350..4054159 | + | 810 | WP_000010128.1 | 23S rRNA (guanine(745)-N(1))-methyltransferase | - |
| M9383_RS20405 () | 4054156..4054722 | - | 567 | WP_005062712.1 | manganese efflux pump MntP | - |
| M9383_RS20415 () | 4055911..4056387 | - | 477 | WP_000156246.1 | DUF986 family protein | - |
| M9383_RS20420 () | 4056442..4057293 | - | 852 | WP_001331209.1 | PTS mannose transporter subunit IID | - |
| M9383_RS20425 () | 4057306..4058106 | - | 801 | WP_000406926.1 | PTS mannose transporter subunit IIC | - |
| M9383_RS20430 () | 4058169..4059140 | - | 972 | WP_000150544.1 | PTS mannose transporter subunit IIAB | - |
| M9383_RS24575 () | 4059457..4059615 | + | 159 | WP_001327808.1 | protein YoaL | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|