MGE detailed information
MGE type: Prophage MGE length: 95602 bp
Accession: NZ_CP097828 Location: 3278063..3373664 Organism: Shigella flexneri strain E Replicon: chromosome
Accession: NZ_CP097828 Location: 3278063..3373664 Organism: Shigella flexneri strain E Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| M9383_RS16190 (3273358) | 3273358..3273621 | + | 264 | WP_000850550.1 | DUF493 family protein YbeD | - |
| M9383_RS16195 (3273722) | 3273722..3274363 | + | 642 | WP_000284045.1 | lipoyl(octanoyl) transferase LipB | - |
| M9383_RS16200 (3274622) | 3274622..3275575 | + | 954 | WP_000378035.1 | YbeF family transcriptional regulator | - |
| M9383_RS16205 (3275784) | 3275784..3276749 | + | 966 | WP_000042632.1 | lipoyl synthase | - |
| M9383_RS16210 (3276850) | 3276850..3277053 | - | 204 | WP_000503931.1 | twin-arginine translocase subunit TatE | - |
| M9383_RS16215 (3277182) | 3277182..3277970 | - | 789 | WP_005049482.1 | deaminated glutathione amidase | - |
| M9383_RS16220 (3278063) | 3278063..3278446 | + | 384 | WP_000939741.1 | fluoride efflux transporter CrcB | - |
| M9383_RS16225 (3278500) | 3278500..3278709 | - | 210 | WP_000034825.1 | transcription antiterminator/RNA stability regulator CspE | - |
| M9383_RS16230 (3278884) | 3278884..3279444 | - | 561 | WP_005049488.1 | lipid IV(A) palmitoyltransferase PagP | - |
| M9383_RS16235 (3280032) | 3280032..3281417 | + | 1386 | WP_000955062.1 | anaerobic C4-dicarboxylate transporter DcuC | - |
| M9383_RS16240 (3281458) | 3281458..3281799 | - | 342 | Protein_3146 | response regulator | - |
| M9383_RS16245 (3282137) | 3282137..3282646 | - | 510 | WP_000833599.1 | DNA-binding protein | - |
| M9383_RS16250 (3282818) | 3282818..3283054 | + | 237 | WP_014532185.1 | helix-turn-helix transcriptional regulator | - |
| M9383_RS16255 (3283029) | 3283029..3284660 | + | 1632 | Protein_3149 | transposase domain-containing protein | - |
| M9383_RS16260 (3284725) | 3284725..3285881 | + | 1157 | WP_094081558.1 | IS3 family transposase IS600 | Transposase |
| M9383_RS16265 (3285893) | 3285893..3286168 | + | 276 | WP_011069283.1 | hypothetical protein | - |
| M9383_RS16270 (3286165) | 3286165..3287106 | - | 942 | WP_000627469.1 | DUF2184 domain-containing protein | - |
| M9383_RS16275 (3287118) | 3287118..3287607 | - | 490 | Protein_3153 | hypothetical protein | - |
| M9383_RS16280 (3287611) | 3287611..3288831 | - | 1221 | WP_000873151.1 | DUF2213 domain-containing protein | - |
| M9383_RS16285 (3288835) | 3288835..3289578 | - | 744 | WP_000184977.1 | phage minor head protein | - |
| M9383_RS16290 (3289469) | 3289469..3290935 | - | 1467 | WP_000113500.1 | DUF1073 domain-containing protein | - |
| M9383_RS16295 (3290935) | 3290935..3291668 | - | 734 | Protein_3157 | PBSX family phage terminase large subunit | - |
| M9383_RS16305 (3292999) | 3292999..3293607 | - | 609 | Protein_3159 | PBSX family phage terminase large subunit | - |
| M9383_RS16310 (3293618) | 3293618..3293692 | - | 75 | Protein_3160 | hypothetical protein | - |
| M9383_RS16315 (3293765) | 3293765..3294933 | + | 1169 | WP_000747032.1 | IS3 family transposase ISLad1 | Transposase |
| M9383_RS16320 (3294939) | 3294939..3295634 | - | 696 | WP_001108105.1 | hypothetical protein | - |
| M9383_RS16325 (3295829) | 3295829..3296341 | + | 513 | WP_011069285.1 | VTT domain-containing protein | - |
| M9383_RS16330 (3296430) | 3296430..3296678 | - | 249 | Protein_3164 | lysis system i-spanin subunit Rz | - |
| M9383_RS16340 (3297925) | 3297925..3298029 | - | 105 | Protein_3166 | lysozyme | - |
| M9383_RS16345 (3298029) | 3298029..3298157 | - | 129 | Protein_3167 | phage holin | - |
| M9383_RS16350 (3298222) | 3298222..3299351 | + | 1130 | WP_130862222.1 | IS3 family transposase ISSfl10 | Transposase |
| M9383_RS16355 (3299392) | 3299392..3300333 | + | 942 | Protein_3169 | hypothetical protein ; Integrase | Integrase |
| M9383_RS16360 (3300468) | 3300468..3301751 | + | 1284 | WP_001091541.1 | putative acyl-CoA thioester hydrolase | - |
| M9383_RS16365 (3301892) | 3301892..3304072 | - | 2181 | WP_000593952.1 | hydratase | - |
| M9383_RS16370 (3304255) | 3304255..3305688 | - | 1434 | WP_001036462.1 | anion permease | - |
| M9383_RS16375 (3305764) | 3305764..3306816 | - | 1053 | WP_000723619.1 | 4-oxalomesaconate tautomerase | - |
| M9383_RS16380 (3307000) | 3307000..3307953 | + | 954 | Protein_3174 | LysR family transcriptional regulator | - |
| M9383_RS16385 (3307994) | 3307994..3308989 | - | 996 | WP_000815445.1 | 6-phosphogluconolactonase | - |
| M9383_RS16390 (3309291) | 3309291..3309380 | - | 90 | Protein_3176 | Tn3 family transposase TnpR_TnShfr1 | Transposase |
| M9383_RS16395 (3309871) | 3309871..3311697 | + | 1827 | WP_011110560.1 | E3 ubiquitin-protein ligase ipaH3 | VF |
| M9383_RS16405 (3311877) | 3311877..3312494 | - | 618 | WP_005061679.1 | DUF4376 domain-containing protein | - |
| M9383_RS16410 (3312560) | 3312560..3313716 | + | 1157 | WP_128599167.1 | IS3 family transposase IS600 | Transposase |
| M9383_RS16415 (3313727) | 3313727..3313959 | + | 233 | Protein_3180 | hypothetical protein | - |
| M9383_RS16420 (3314059) | 3314059..3314253 | + | 195 | Protein_3181 | hypothetical protein | - |
| M9383_RS16430 (3315509) | 3315509..3315937 | + | 429 | Protein_3183 | exonuclease VIII | - |
| M9383_RS16440 (3317173) | 3317173..3317289 | - | 117 | Protein_3185 | hypothetical protein | - |
| M9383_RS16445 (3317325) | 3317325..3317606 | - | 282 | WP_001069001.1 | YdaE family protein | - |
| M9383_RS16450 (3317623) | 3317623..3318471 | - | 849 | WP_000935590.1 | Rha family phage regulatory protein | - |
| M9383_RS16455 (3319019) | 3319019..3320247 | + | 1229 | WP_094081542.1 | IS3 family transposase IS2 | Transposase |
| M9383_RS16460 (3320489) | 3320489..3320692 | - | 204 | WP_001005968.1 | hypothetical protein | - |
| M9383_RS16465 (3320694) | 3320694..3320849 | - | 156 | WP_001091985.1 | DUF1391 family protein | - |
| M9383_RS16470 (3321052) | 3321052..3321459 | - | 408 | WP_000787424.1 | helix-turn-helix domain-containing protein | - |
| M9383_RS16475 (3321536) | 3321536..3321763 | + | 228 | WP_000912291.1 | Cro/CI family transcriptional regulator | - |
| M9383_RS16480 (3321747) | 3321747..3322169 | + | 423 | WP_000702036.1 | toxin YdaT family protein | - |
| M9383_RS16485 (3322247) | 3322247..3322897 | + | 651 | WP_005107109.1 | hypothetical protein | - |
| M9383_RS16490 (3323043) | 3323043..3323789 | + | 747 | Protein_3195 | ATP-binding protein | - |
| M9383_RS16495 (3323804) | 3323804..3324226 | + | 423 | WP_001118167.1 | DUF977 family protein | - |
| M9383_RS16500 (3324284) | 3324284..3324640 | + | 357 | WP_005048249.1 | hypothetical protein | - |
| M9383_RS16505 (3324809) | 3324809..3325474 | + | 666 | WP_012421537.1 | epoxyqueuosine reductase QueH | - |
| M9383_RS16510 (3325702) | 3325702..3325857 | + | 156 | WP_014532198.1 | type I toxin-antitoxin system toxin HokD | - |
| M9383_RS16515 (3326107) | 3326107..3326394 | + | 288 | WP_000687442.1 | hypothetical protein | - |
| M9383_RS16520 (3326433) | 3326433..3326801 | + | 369 | Protein_3201 | DUF1367 family protein | - |
| M9383_RS16530 (3328066) | 3328066..3328299 | + | 234 | Protein_3203 | DUF1367 family protein | - |
| M9383_RS16535 (3328299) | 3328299..3328589 | + | 291 | WP_000228005.1 | DUF1364 domain-containing protein | - |
| M9383_RS16540 (3328586) | 3328586..3328696 | + | 111 | Protein_3205 | DUF1133 family protein | - |
| M9383_RS16545 (3328773) | 3328773..3329941 | + | 1169 | WP_000747032.1 | IS3 family transposase ISLad1 | Transposase |
| M9383_RS16550 (3329952) | 3329952..3330392 | + | 441 | Protein_3207 | DUF1133 family protein | - |
| M9383_RS16575 (3331572) | 3331572..3331661 | + | 90 | Protein_3208 | phage holin | - |
| M9383_RS16590 (3334202) | 3334202..3334396 | + | 195 | Protein_3211 | hypothetical protein | - |
| M9383_RS16595 (3334471) | 3334471..3334749 | + | 279 | WP_005061104.1 | hypothetical protein | - |
| M9383_RS16600 (3334746) | 3334746..3335156 | + | 411 | WP_000814621.1 | recombination protein NinB | - |
| M9383_RS16605 (3335153) | 3335153..3335329 | + | 177 | WP_001252556.1 | NinE family protein | - |
| M9383_RS16610 (3335371) | 3335371..3335679 | - | 309 | WP_000147081.1 | helix-turn-helix transcriptional regulator | Antitoxin Detail |
| M9383_RS16615 (3335669) | 3335669..3335899 | - | 231 | WP_005061113.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| M9383_RS16620 (3335912) | 3335912..3336370 | + | 459 | WP_000961311.1 | ash family protein | - |
| M9383_RS16625 (3336428) | 3336428..3336880 | + | 453 | WP_232046050.1 | Rha family transcriptional regulator | - |
| M9383_RS16630 (3336877) | 3336877..3337110 | + | 234 | WP_000618004.1 | hypothetical protein | - |
| M9383_RS16635 (3337097) | 3337097..3338005 | + | 909 | WP_001247840.1 | hypothetical protein | - |
| M9383_RS16640 (3338016) | 3338016..3338894 | + | 879 | WP_000988183.1 | ATP-binding protein | - |
| M9383_RS16645 (3338891) | 3338891..3340282 | + | 1392 | WP_000211324.1 | replicative DNA helicase | - |
| M9383_RS16650 (3340279) | 3340279..3340536 | + | 258 | WP_001064799.1 | hypothetical protein | - |
| M9383_RS16655 (3340631) | 3340631..3340831 | + | 201 | WP_000111769.1 | protein ninH | - |
| M9383_RS16660 (3340824) | 3340824..3341204 | + | 381 | WP_001204832.1 | antiterminator Q family protein | - |
| M9383_RS16685 (3342007) | 3342007..3342222 | + | 216 | WP_000839566.1 | class II holin family protein | - |
| M9383_RS16690 (3342226) | 3342226..3342855 | + | 630 | WP_005094817.1 | hypothetical protein | - |
| M9383_RS16695 (3342921) | 3342921..3343454 | + | 534 | WP_001274722.1 | lysozyme | - |
| M9383_RS16700 (3343451) | 3343451..3343918 | + | 468 | WP_000092287.1 | lysis protein | - |
| M9383_RS16705 (3344121) | 3344121..3344300 | + | 180 | Protein_3230 | Rha family transcriptional regulator | - |
| M9383_RS16710 (3344344) | 3344344..3345350 | - | 1007 | Protein_3231 | IS3 family transposase ISSfl10 | Transposase |
| M9383_RS16715 (3345402) | 3345402..3346611 | - | 1210 | Protein_3232 | IS3 family transposase IS629 | Transposase |
| M9383_RS16720 (3346667) | 3346667..3347706 | + | 1040 | Protein_3233 | IS3 family transposase IS600 | Transposase |
| M9383_RS16725 (3347749) | 3347749..3348057 | + | 309 | Protein_3234 | terminase small subunit | - |
| M9383_RS16730 (3348029) | 3348029..3349957 | + | 1929 | WP_001026848.1 | phage terminase large subunit family protein | - |
| M9383_RS16735 (3349941) | 3349941..3350144 | + | 204 | WP_000259004.1 | gpW family head-tail joining protein | - |
| M9383_RS16740 (3350141) | 3350141..3351734 | + | 1594 | Protein_3237 | phage portal protein | - |
| M9383_RS16745 (3351724) | 3351724..3353229 | + | 1506 | WP_001254016.1 | S49 family peptidase | - |
| M9383_RS16750 (3353266) | 3353266..3353613 | + | 348 | WP_000256830.1 | head decoration protein | - |
| M9383_RS16755 (3353671) | 3353671..3354699 | + | 1029 | WP_000522637.1 | major capsid protein | - |
| M9383_RS16760 (3354751) | 3354751..3355137 | + | 387 | WP_000201488.1 | DNA-packaging protein FI | - |
| M9383_RS16765 (3355149) | 3355149..3355526 | + | 378 | WP_000348593.1 | head-tail joining protein | - |
| M9383_RS16770 (3355513) | 3355513..3356097 | + | 585 | WP_000677140.1 | phage tail protein | - |
| M9383_RS16775 (3356094) | 3356094..3356495 | + | 402 | WP_001079406.1 | phage minor tail U family protein | - |
| M9383_RS16780 (3356506) | 3356506..3357246 | + | 741 | WP_000211126.1 | phage tail tube protein | - |
| M9383_RS16785 (3357305) | 3357305..3357691 | + | 387 | WP_000478927.1 | phage minor tail protein G | - |
| M9383_RS16790 (3357700) | 3357700..3358029 | + | 330 | WP_001161004.1 | phage tail assembly protein T | - |
| M9383_RS16795 (3358001) | 3358001..3360739 | + | 2739 | WP_039064761.1 | phage tail tape measure protein | - |
| M9383_RS16800 (3360739) | 3360739..3361068 | + | 330 | WP_000447264.1 | phage tail protein | - |
| M9383_RS16805 (3361068) | 3361068..3361766 | + | 699 | WP_001152490.1 | phage minor tail protein L | - |
| M9383_RS16810 (3361771) | 3361771..3362514 | + | 744 | WP_000194737.1 | C40 family peptidase | - |
| M9383_RS16815 (3362478) | 3362478..3363053 | + | 576 | WP_005105520.1 | tail assembly protein | - |
| M9383_RS16820 (3363114) | 3363114..3366594 | + | 3481 | Protein_3253 | host specificity protein J | - |
| M9383_RS16825 (3366662) | 3366662..3367261 | + | 600 | WP_001230368.1 | Outer membrane protein X | VF |
| M9383_RS16830 (3367325) | 3367325..3368740 | + | 1416 | WP_000268794.1 | prophage tail fiber N-terminal domain-containing protein | - |
| M9383_RS16835 (3368691) | 3368691..3369314 | + | 624 | WP_000930145.1 | DUF4376 domain-containing protein | - |
| M9383_RS16845 (3369494) | 3369494..3371257 | - | 1764 | WP_000801162.1 | putative E3 ubiquitin-protein ligase ipaH4.5 | VF |
| M9383_RS16850 (3371349) | 3371349..3371435 | + | 87 | Protein_3258 | transposase | - |
| M9383_RS16855 (3371445) | 3371445..3371525 | - | 81 | Protein_3259 | hypothetical protein | - |
| M9383_RS16860 (3371840) | 3371840..3372316 | - | 477 | WP_000767391.1 | kinase inhibitor | - |
| M9383_RS16865 (3372375) | 3372375..3373664 | - | 1290 | WP_005048541.1 | Adenosylmethionine-8-amino-7-oxononanoate aminotransferase | VF |
| M9383_RS16870 (3373751) | 3373751..3374791 | + | 1041 | WP_000951226.1 | biotin synthase BioB | - |
| M9383_RS16875 (3374788) | 3374788..3375942 | + | 1155 | WP_000118810.1 | 8-amino-7-oxononanoate synthase | - |
| M9383_RS16880 (3375929) | 3375929..3376684 | + | 756 | WP_000246759.1 | malonyl-ACP O-methyltransferase BioC | - |
| M9383_RS16885 (3376677) | 3376677..3377354 | + | 678 | WP_000044868.1 | dethiobiotin synthase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|