MGE detailed information
MGE type: Prophage MGE length: 89042 bp
Accession: NZ_CP097828 Location: 2873825..2962866 Organism: Shigella flexneri strain E Replicon: chromosome
Accession: NZ_CP097828 Location: 2873825..2962866 Organism: Shigella flexneri strain E Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| M9383_RS14140 (2873117) | 2873117..2873920 | + | 804 | WP_000997035.1 | 2,5-didehydrogluconate reductase DkgB | - |
| M9383_RS14145 (2873959) | 2873959..2874204 | - | 246 | Protein_2741 | IS4 family transposase | - |
| M9383_RS14150 (2874663) | 2874663..2874664 | - | 2 | WP_232046046.1 | IS1 family transposase | - |
| M9383_RS14155 (2874972) | 2874972..2876081 | - | 1110 | Protein_2743 | IS4 family transposase IS4 | Transposase |
| M9383_RS14160 (2876131) | 2876131..2877045 | - | 915 | WP_000648578.1 | HTH-type transcriptional regulator DmlR | VF |
| M9383_RS14165 (2877286) | 2877286..2878086 | + | 801 | WP_001230983.1 | endonuclease/exonuclease/phosphatase family protein | - |
| M9383_RS14170 (2878164) | 2878164..2878934 | + | 771 | WP_000211683.1 | class I SAM-dependent methyltransferase | - |
| M9383_RS14175 (2878982) | 2878982..2880340 | - | 1359 | WP_000644678.1 | Membrane-bound lytic murein transglycosylase D | VF |
| M9383_RS14180 (2880412) | 2880412..2881167 | - | 756 | WP_001052754.1 | hydroxyacylglutathione hydrolase | - |
| M9383_RS14185 (2881201) | 2881201..2881923 | + | 723 | WP_005060310.1 | class I SAM-dependent methyltransferase | - |
| M9383_RS14190 (2881920) | 2881920..2882387 | - | 468 | WP_000917883.1 | ribonuclease HI | - |
| M9383_RS14195 (2882452) | 2882452..2883183 | + | 732 | WP_005060334.1 | DNA polymerase III subunit epsilon | - |
| M9383_RS14205 (2883523) | 2883523..2884569 | - | 1047 | WP_000402248.1 | hypothetical protein | VF |
| M9383_RS14210 (2884580) | 2884580..2885565 | - | 986 | Protein_2753 | hypothetical protein | VF |
| M9383_RS14215 (2885562) | 2885562..2887445 | - | 1884 | WP_000371479.1 | type VI secretion system baseplate subunit TssF | - |
| M9383_RS14220 (2887461) | 2887461..2887955 | - | 495 | WP_001276640.1 | hypothetical protein | VF |
| M9383_RS14225 (2887952) | 2887952..2888782 | - | 831 | Protein_2756 | hypothetical protein | VF |
| M9383_RS14230 (2888769) | 2888769..2889326 | - | 558 | WP_258249507.1 | type VI secretion system-associated protein TagK | - |
| M9383_RS14235 (2889378) | 2889378..2889677 | - | 300 | WP_000804009.1 | FHA domain-containing protein | - |
| M9383_RS14240 (2889775) | 2889775..2891003 | + | 1229 | WP_094081542.1 | IS3 family transposase IS2 | Transposase |
| M9383_RS14245 (2891060) | 2891060..2891347 | - | 288 | WP_000343120.1 | hypothetical protein | - |
| M9383_RS14255 (2892621) | 2892621..2892779 | - | 159 | Protein_2762 | IS607 family transposase ISSto13 | Transposase |
| M9383_RS14260 (2892779) | 2892779..2893084 | - | 306 | WP_000206732.1 | protein YfdT | - |
| M9383_RS14265 (2893084) | 2893084..2893443 | - | 360 | WP_000563002.1 | hypothetical protein | - |
| M9383_RS14270 (2893427) | 2893427..2894636 | - | 1210 | Protein_2765 | IS3 family transposase IS629 | Transposase |
| M9383_RS14275 (2894799) | 2894799..2895955 | + | 1157 | WP_094081509.1 | IS3 family transposase ISSd1 | Transposase |
| M9383_RS14280 (2896001) | 2896001..2896357 | + | 357 | Protein_2767 | integrase | - |
| M9383_RS14285 (2896619) | 2896619..2896981 | + | 363 | WP_000915849.1 | GtrA family protein | - |
| M9383_RS14290 (2896978) | 2896978..2897898 | + | 921 | WP_000703663.1 | Prophage bactoprenol glucosyl transferase | VF |
| M9383_RS14295 (2897901) | 2897901..2899421 | + | 1521 | WP_228355687.1 | glycosyltransferase family 39 protein | - |
| M9383_RS14300 (2899655) | 2899655..2900095 | - | 441 | WP_001223320.1 | tail assembly chaperone | - |
| M9383_RS14305 (2900067) | 2900067..2900579 | - | 513 | Protein_2772 | hypothetical protein | - |
| M9383_RS14310 (2900644) | 2900644..2901800 | + | 1157 | WP_094099483.1 | IS3 family transposase ISSd1 | Transposase |
| M9383_RS14315 (2901844) | 2901844..2902812 | + | 969 | Protein_2774 | Tyrosine recombinase XerD ; Integrase | Integrase |
| M9383_RS14325 (2903017) | 2903017..2904270 | - | 1254 | WP_000893267.1 | glutamate-5-semialdehyde dehydrogenase | - |
| M9383_RS14330 (2904282) | 2904282..2905385 | - | 1104 | WP_001285281.1 | glutamate 5-kinase | - |
| M9383_RS14340 (2906449) | 2906449..2907504 | + | 1056 | WP_000749864.1 | phosphoporin PhoE | - |
| M9383_RS14345 (2907543) | 2907543..2907944 | - | 402 | WP_000174678.1 | sigma factor-binding protein Crl | - |
| - (2908662) | 2908662..2908742 | - | 81 | NuclAT_8 | - | - |
| - (2908662) | 2908662..2908742 | - | 81 | NuclAT_8 | - | - |
| - (2908662) | 2908662..2908742 | - | 81 | NuclAT_8 | - | - |
| - (2908662) | 2908662..2908742 | - | 81 | NuclAT_8 | - | - |
| M9383_RS14350 (2908002) | 2908002..2909246 | - | 1245 | WP_000189557.1 | esterase FrsA | - |
| M9383_RS14355 (2909338) | 2909338..2909796 | - | 459 | WP_001291990.1 | xanthine phosphoribosyltransferase | - |
| M9383_RS14360 (2910058) | 2910058..2911515 | + | 1458 | WP_001293009.1 | cytosol nonspecific dipeptidase | - |
| M9383_RS14365 (2911572) | 2911572..2912132 | - | 561 | Protein_2783 | peptide chain release factor H | - |
| M9383_RS14370 (2912248) | 2912248..2913291 | - | 1044 | WP_005060486.1 | RNA ligase RtcB family protein | - |
| M9383_RS14375 (2913537) | 2913537..2913989 | - | 453 | WP_001059846.1 | GNAT family N-acetyltransferase | - |
| M9383_RS14380 (2913999) | 2913999..2914397 | - | 399 | WP_001263491.1 | type II toxin-antitoxin system mRNA interferase toxin YafO | Toxin Detail |
| M9383_RS14385 (2914400) | 2914400..2914693 | - | 294 | WP_000554759.1 | type I toxin-antitoxin system antitoxin YafN | Antitoxin Detail |
| M9383_RS14390 (2914745) | 2914745..2915800 | - | 1056 | WP_001226172.1 | DNA polymerase IV | - |
| M9383_RS14395 (2915871) | 2915871..2916656 | - | 786 | WP_000207560.1 | Chemotaxis protein LafU | VF |
| M9383_RS14400 (2916628) | 2916628..2918340 | + | 1713 | Protein_2790 | Flagellar biosynthesis protein FlhA | VF |
| M9383_RS14405 (2918557) | 2918557..2919054 | - | 498 | WP_000006251.1 | REP-associated tyrosine transposase RayT | - |
| M9383_RS14410 (2919230) | 2919230..2919751 | - | 522 | Protein_2792 | hypothetical protein | VF |
| M9383_RS14415 (2920135) | 2920135..2920875 | + | 741 | WP_001225676.1 | peptidoglycan meso-diaminopimelic acid protein amidase | - |
| M9383_RS14420 (2920846) | 2920846..2921613 | - | 768 | WP_005060449.1 | class II glutamine amidotransferase | - |
| M9383_RS14425 (2921819) | 2921819..2922397 | - | 579 | WP_000284050.1 | Phosphoheptose isomerase | VF |
| M9383_RS14430 (2922637) | 2922637..2925081 | + | 2445 | Protein_2796 | Acyl-coenzyme A dehydrogenase | VF |
| M9383_RS14435 (2925124) | 2925124..2925570 | - | 447 | WP_005100645.1 | Ivy family C-type lysozyme inhibitor | - |
| M9383_RS14440 (2925751) | 2925751..2926521 | + | 771 | WP_001139559.1 | 2-oxoglutaramate amidase | - |
| M9383_RS14445 (2926631) | 2926631..2926851 | + | 221 | Protein_2799 | SymE family type I addiction module toxin | - |
| M9383_RS14450 (2926885) | 2926885..2927582 | + | 698 | WP_232046045.1 | IS1 family transposase IS1X2 | Transposase |
| M9383_RS14455 (2927864) | 2927864..2928790 | + | 927 | WP_045177322.1 | taurine ABC transporter substrate-binding protein | - |
| M9383_RS14460 (2928803) | 2928803..2929570 | + | 768 | WP_000939367.1 | Taurine import ATP-binding protein TauB | VF |
| M9383_RS14465 (2929567) | 2929567..2930394 | + | 828 | WP_000114607.1 | taurine ABC transporter permease TauC | - |
| M9383_RS14470 (2930391) | 2930391..2931242 | + | 852 | WP_000004031.1 | taurine dioxygenase | - |
| M9383_RS14475 (2931348) | 2931348..2932322 | - | 975 | WP_001295337.1 | porphobilinogen synthase | - |
| M9383_RS14480 (2932847) | 2932847..2933215 | + | 369 | Protein_2806 | autotransporter outer membrane beta-barrel domain-containing protein | - |
| M9383_RS14490 (2934084) | 2934084..2935312 | + | 1229 | WP_094081542.1 | IS3 family transposase IS2 | Transposase |
| M9383_RS14495 (2935320) | 2935320..2935853 | + | 534 | Protein_2809 | autotransporter outer membrane beta-barrel domain-containing protein | - |
| M9383_RS14500 (2935917) | 2935917..2936024 | + | 108 | Protein_2810 | IS3 family transposase ISEhe3 | Transposase |
| M9383_RS14505 (2936089) | 2936089..2937245 | + | 1157 | WP_094081493.1 | IS3 family transposase IS600 | Transposase |
| M9383_RS14510 (2937286) | 2937286..2938331 | + | 1046 | Protein_2812 | IS3 family transposase ISEhe3 | Transposase |
| M9383_RS14515 (2938351) | 2938351..2938878 | + | 528 | Protein_2813 | autotransporter outer membrane beta-barrel domain-containing protein | - |
| M9383_RS14520 (2938966) | 2938966..2939469 | + | 504 | WP_000953938.1 | helix-turn-helix domain-containing protein | - |
| M9383_RS14525 (2939470) | 2939470..2940627 | - | 1158 | WP_000830735.1 | D-alanyl-D-alanine- carboxypeptidase/endopeptidase AmpH | - |
| M9383_RS14530 (2940979) | 2940979..2942199 | + | 1221 | WP_005062822.1 | peptide antibiotic transporter SbmA | - |
| M9383_RS14535 (2942212) | 2942212..2943306 | + | 1095 | WP_000092055.1 | surface-exposed outer membrane lipoprotein YaiW | - |
| M9383_RS14540 (2943365) | 2943365..2943673 | - | 309 | WP_000763148.1 | YaiY family protein | - |
| M9383_RS14545 (2943933) | 2943933..2944145 | + | 213 | WP_001599861.1 | DUF2754 domain-containing protein | - |
| M9383_RS14550 (2944169) | 2944169..2945263 | - | 1095 | WP_000413677.1 | D-alanine--D-alanine ligase | - |
| M9383_RS14555 (2945341) | 2945341..2945544 | + | 204 | WP_023517632.1 | hypothetical protein | - |
| M9383_RS14560 (2945726) | 2945726..2945986 | + | 261 | WP_000792969.1 | anti-adapter protein IraP | - |
| M9383_RS14565 (2946087) | 2946087..2947502 | + | 1416 | WP_000814400.1 | alkaline phosphatase | - |
| M9383_RS14570 (2947621) | 2947621..2947941 | + | 321 | WP_005053289.1 | phosphate starvation-inducible protein PsiF | - |
| M9383_RS14575 (2947992) | 2947992..2949201 | - | 1210 | Protein_2825 | IS3 family transposase IS629 | Transposase |
| M9383_RS14580 (2949352) | 2949352..2950467 | + | 1116 | WP_005053118.1 | diguanylate cyclase AdrA | - |
| M9383_RS14585 (2950484) | 2950484..2951293 | - | 810 | WP_001295331.1 | pyrroline-5-carboxylate reductase | - |
| M9383_RS14590 (2951413) | 2951413..2951871 | + | 459 | WP_000158130.1 | YaiI/YqxD family protein | - |
| M9383_RS14595 (2952054) | 2952054..2952578 | + | 525 | WP_000193385.1 | shikimate kinase AroL | - |
| M9383_RS14600 (2952628) | 2952628..2952816 | + | 189 | WP_001142438.1 | protein YaiA | - |
| M9383_RS14605 (2953077) | 2953077..2953754 | + | 678 | WP_001276420.1 | AroM family protein | - |
| M9383_RS14610 (2953826) | 2953826..2954110 | + | 285 | WP_000941942.1 | pyrimidine/purine nucleoside phosphorylase | - |
| M9383_RS14615 (2954265) | 2954265..2954600 | + | 336 | Protein_2833 | DUF2773 domain-containing protein | - |
| M9383_RS14620 (2954597) | 2954597..2955052 | + | 456 | WP_000194195.1 | hypothetical protein | - |
| M9383_RS14625 (2955130) | 2955130..2956041 | - | 912 | WP_005053105.1 | recombination-associated protein RdgC | - |
| M9383_RS14630 (2956166) | 2956166..2957074 | + | 909 | WP_001219336.1 | fructokinase | - |
| M9383_RS14635 (2957217) | 2957217..2958398 | - | 1182 | WP_005060784.1 | MFS transporter AraJ | - |
| M9383_RS14640 (2958524) | 2958524..2961667 | - | 3144 | WP_000698940.1 | exonuclease subunit SbcC | - |
| M9383_RS14645 (2961664) | 2961664..2962866 | - | 1203 | WP_001221295.1 | exonuclease subunit SbcD | - |
| M9383_RS14650 (2963056) | 2963056..2963745 | + | 690 | Protein_2840 | phosphate response regulator transcription factor PhoB | - |
| M9383_RS14655 (2963803) | 2963803..2965098 | + | 1296 | WP_000893611.1 | phosphate regulon sensor histidine kinase PhoR | - |
| M9383_RS14660 (2965505) | 2965505..2966824 | + | 1320 | WP_000149647.1 | branched-chain amino acid transporter carrier protein BrnQ | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|