MGE detailed information
MGE type: Prophage MGE length: 70224 bp
Accession: NZ_CP097828 Location: 108790..179013 Organism: Shigella flexneri strain E Replicon: chromosome
Accession: NZ_CP097828 Location: 108790..179013 Organism: Shigella flexneri strain E Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| M9383_RS00625 () | 104214..105908 | - | 1695 | Protein_115 | cellulose biosynthesis regulator diguanylate cyclase DgcQ | - |
| M9383_RS00630 () | 106079..106261 | - | 183 | WP_000009302.1 | DUF2158 domain-containing protein | - |
| M9383_RS00635 () | 106340..107257 | - | 918 | WP_000922688.1 | DUF808 domain-containing protein | - |
| M9383_RS00640 () | 107430..108350 | + | 921 | WP_001212270.1 | drug/metabolite exporter YedA | - |
| M9383_RS00645 () | 108339..108809 | - | 471 | WP_000228688.1 | VSPR family DNA mismatch endonuclease | - |
| M9383_RS00650 () | 108790..110208 | - | 1419 | WP_001157215.1 | DNA-cytosine methyltransferase | - |
| M9383_RS00655 () | 110275..110815 | - | 541 | Protein_121 | phosphohydrolase | - |
| M9383_RS00660 () | 110855..111112 | - | 258 | WP_032155863.1 | cell division protein DrpB | - |
| M9383_RS00675 () | 113403..113513 | - | 111 | Protein_125 | IS3 family transposase ISEhe3 | Transposase |
| M9383_RS00680 () | 113579..114343 | + | 765 | Protein_126 | porin | - |
| M9383_RS00690 () | 115674..115853 | + | 180 | Protein_128 | porin | - |
| M9383_RS00695 () | 116481..117178 | + | 698 | WP_223368647.1 | IS1 family transposase IS1X2 | Transposase |
| M9383_RS00700 () | 117190..118137 | - | 948 | Protein_130 | two-component system sensor histidine kinase HprS | - |
| M9383_RS00705 () | 118137..118808 | - | 672 | WP_001347103.1 | Transcriptional regulatory protein HprR | VF |
| M9383_RS00710 () | 118941..119354 | + | 414 | WP_000920127.1 | hydroxyisourate hydrolase | - |
| M9383_RS00715 () | 119463..120467 | + | 1005 | Protein_133 | protein-methionine-sulfoxide reductase catalytic subunit MsrP | - |
| M9383_RS00720 () | 120468..121103 | + | 636 | WP_001240061.1 | protein-methionine-sulfoxide reductase heme-binding subunit MsrQ | - |
| M9383_RS00725 () | 121361..122011 | + | 651 | WP_001007781.1 | metal-binding protein ZinT | - |
| M9383_RS00730 () | 123089..123358 | - | 270 | WP_000937511.1 | tail fiber assembly protein | - |
| M9383_RS00735 () | 123415..124083 | + | 669 | WP_000239881.1 | class I SAM-dependent methyltransferase | - |
| M9383_RS00740 () | 124399..126042 | + | 1644 | WP_011110600.1 | E3 ubiquitin-protein ligase ipaH3 | VF |
| M9383_RS00745 () | 126222..126701 | - | 480 | Protein_139 | DUF4376 domain-containing protein | - |
| M9383_RS00750 () | 126742..127599 | - | 858 | Protein_140 | IS3 family transposase IS600 | Transposase |
| M9383_RS00755 () | 127657..128354 | + | 698 | WP_232046035.1 | IS1 family transposase IS1X2 | Transposase |
| M9383_RS00760 () | 128447..128929 | - | 483 | WP_000594909.1 | hypothetical protein | - |
| M9383_RS00765 () | 128997..129650 | - | 654 | Protein_143 | phage tail tape measure protein | - |
| M9383_RS00770 () | 129712..130868 | + | 1157 | WP_094081518.1 | IS3 family transposase IS600 | Transposase |
| M9383_RS00775 () | 130912..132213 | - | 1302 | Protein_145 | phage tail tape measure protein | - |
| M9383_RS00780 () | 132298..132633 | - | 336 | WP_001251340.1 | phage tail assembly protein | - |
| M9383_RS00785 () | 132633..132989 | - | 357 | WP_001062338.1 | phage tail tube protein | - |
| M9383_RS00790 () | 132989..134485 | - | 1497 | WP_000155744.1 | phage tail sheath subtilisin-like domain-containing protein | - |
| M9383_RS00795 () | 134482..134643 | - | 162 | WP_000497744.1 | DUF2635 domain-containing protein | - |
| M9383_RS00800 () | 134653..135012 | - | 360 | Protein_150 | hypothetical protein | - |
| M9383_RS00810 () | 136259..136483 | - | 225 | Protein_152 | hypothetical protein | - |
| M9383_RS00815 () | 136480..137004 | - | 525 | WP_001076765.1 | hypothetical protein | - |
| M9383_RS00820 () | 136970..137386 | - | 417 | WP_000702444.1 | phage head closure protein | - |
| M9383_RS00825 () | 137383..137706 | - | 324 | WP_000924704.1 | head-tail connector protein | - |
| M9383_RS00830 () | 137860..138672 | - | 813 | Protein_156 | IS66 family transposase ISSfl3 | Transposase |
| M9383_RS00835 () | 138669..139019 | - | 351 | WP_005049241.1 | IS66 family transposase ISSfl3 | Transposase |
| M9383_RS00840 () | 139016..139690 | - | 675 | WP_004967157.1 | IS66 family transposase ISSfl3 | Transposase |
| M9383_RS00845 () | 139789..140004 | - | 216 | WP_000839572.1 | class II holin family protein | - |
| M9383_RS00870 () | 140800..141488 | - | 689 | Protein_160 | bacteriophage antitermination protein Q | - |
| M9383_RS00875 () | 141485..141850 | - | 366 | WP_000140017.1 | RusA family crossover junction endodeoxyribonuclease | - |
| M9383_RS00880 () | 141851..142909 | - | 1059 | WP_001265248.1 | DUF968 domain-containing protein | - |
| M9383_RS00885 () | 142911..143189 | - | 279 | WP_011069426.1 | hypothetical protein | - |
| M9383_RS00890 () | 143357..143512 | - | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | Toxin Detail |
| - | 143524..143582 | + | 59 | - | - | Antitoxin Detail |
| M9383_RS00895 () | 144164..144580 | - | 417 | WP_005069274.1 | hypothetical protein | - |
| M9383_RS00900 () | 144607..144747 | + | 141 | Protein_166 | DUF4224 domain-containing protein | - |
| M9383_RS00905 () | 144747..145787 | + | 1041 | WP_005096324.1 | Tyrosine recombinase XerC ; Integrase | Integrase |
| M9383_RS00915 () | 145998..146795 | + | 798 | WP_024260703.1 | DgsA anti-repressor MtfA | - |
| M9383_RS00925 () | 147133..148395 | + | 1263 | Protein_169 | Prophage integrase IntA ; Integrase | Integrase |
| M9383_RS00935 () | 149744..150232 | + | 489 | Protein_171 | MFS transporter | - |
| M9383_RS00940 () | 150297..151496 | + | 1200 | Protein_172 | IS3 family transposase IS600 | Transposase |
| M9383_RS00945 () | 151497..151703 | + | 207 | WP_000466572.1 | hypothetical protein | - |
| M9383_RS00950 () | 151805..153259 | + | 1455 | WP_001060217.1 | AMP nucleosidase | - |
| M9383_RS00955 () | 153602..154318 | + | 717 | WP_000532920.1 | putative transcriptional regulatory protein YeeN | VF |
| M9383_RS00965 () | 154950..156577 | - | 1628 | Protein_176 | toxic metabolite efflux MATE transporter YeeO | - |
| M9383_RS00975 () | 156695..157645 | - | 951 | WP_001010987.1 | HTH-type transcriptional regulator Cbl | - |
| M9383_RS00980 () | 157747..158664 | - | 918 | WP_258248042.1 | nitrogen assimilation transcriptional regulator NAC | - |
| M9383_RS00990 () | 159123..160058 | - | 936 | WP_000986346.1 | L,D-transpeptidase | - |
| M9383_RS00995 () | 160120..161199 | - | 1080 | WP_001165576.1 | nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase | - |
| M9383_RS01000 () | 161211..161954 | - | 744 | WP_005049317.1 | adenosylcobinamide-GDP ribazoletransferase | - |
| M9383_RS01005 () | 161951..162454 | - | 504 | WP_001272809.1 | bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase | - |
| M9383_RS01015 () | 163871..165080 | + | 1210 | Protein_184 | IS3 family transposase IS629 | Transposase |
| M9383_RS01020 () | 165458..165604 | - | 147 | Protein_185 | transposase domain-containing protein | - |
| M9383_RS01025 () | 165706..165840 | + | 135 | WP_001297944.1 | EutP/PduV family microcompartment system protein | - |
| M9383_RS01030 () | 165941..166270 | - | 330 | WP_000450409.1 | DUF496 family protein | - |
| M9383_RS01035 () | 166442..166726 | - | 285 | Protein_188 | hypothetical protein | - |
| M9383_RS01040 () | 166811..167485 | + | 675 | WP_004967157.1 | IS66 family transposase ISSfl3 | Transposase |
| M9383_RS01045 () | 167482..167652 | + | 171 | Protein_190 | IS66 family transposase ISSfl3 | Transposase |
| M9383_RS01050 () | 167697..168906 | - | 1210 | Protein_191 | IS3 family transposase IS629 | Transposase |
| M9383_RS01055 () | 168962..169141 | + | 180 | Protein_192 | IS66 family insertion sequence element accessory protein TnpB | - |
| M9383_RS01060 () | 169138..170331 | + | 1194 | Protein_193 | IS66 family transposase ISSfl3 | Transposase |
| M9383_RS01070 () | 171615..171902 | - | 288 | Protein_195 | transposase | - |
| M9383_RS01080 () | 173233..174138 | - | 906 | Protein_197 | IS66 family transposase ISSfl3 | Transposase |
| M9383_RS01085 () | 174135..174485 | - | 351 | WP_005049241.1 | IS66 family transposase ISSfl3 | Transposase |
| M9383_RS01090 () | 174482..175156 | - | 675 | WP_004967157.1 | IS66 family transposase ISSfl3 | Transposase |
| M9383_RS01095 () | 175238..176074 | - | 837 | Protein_200 | hypothetical protein ; Integrase | Integrase |
| M9383_RS01100 () | 176256..177680 | + | 1425 | WP_000132548.1 | exodeoxyribonuclease I | - |
| M9383_RS01105 () | 177723..177950 | - | 228 | WP_000985273.1 | thiosulfate utilization sulfurtransferase TsuB/YeeD | - |
| M9383_RS01110 () | 177964..179022 | - | 1059 | WP_000492293.1 | thiosulfate utilization transporter TsuA/YeeE | - |
| M9383_RS01115 () | 179201..180559 | - | 1359 | WP_000019203.1 | putrescine/proton symporter PlaP | - |
| M9383_RS01120 () | 180549..180611 | - | 63 | WP_097433929.1 | membrane protein YoeI | - |
| M9383_RS01125 () | 180772..181755 | - | 984 | WP_000803326.1 | LysR substrate-binding domain-containing protein | - |
| M9383_RS01130 () | 181801..182625 | - | 825 | WP_000754740.1 | SDR family oxidoreductase | - |
| M9383_RS01135 () | 182708..182962 | - | 255 | WP_000767829.1 | type II toxin-antitoxin system mRNA interferase toxin YoeB | - |
| M9383_RS01145 () | 183715..183987 | - | 273 | WP_001259256.1 | YoeB-YefM toxin-antitoxin system antitoxin YefM | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|