MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 126307 bp
Accession: NZ_CP097550 Location: 1..126307 Organism: Dinoroseobacter shibae strain DFL-36 Replicon: plasmid pDFL36-03
Accession: NZ_CP097550 Location: 1..126307 Organism: Dinoroseobacter shibae strain DFL-36 Replicon: plasmid pDFL36-03
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| M8007_RS20180 (M8007_20180) | 12..776 | - | 765 | WP_012187037.1 | glutaredoxin | - |
| M8007_RS20185 (M8007_20185) | 789..1625 | - | 837 | WP_012187184.1 | DUF305 domain-containing protein | - |
| M8007_RS22260 | 1805..2386 | + | 582 | WP_012187183.1 | L,D-transpeptidase | - |
| M8007_RS20195 (M8007_20195) | 2512..3774 | + | 1263 | WP_007803424.1 | multicopper oxidase family protein | - |
| M8007_RS20200 (M8007_20200) | 3888..4400 | + | 513 | WP_012187181.1 | disulfide bond formation protein B | - |
| M8007_RS20205 (M8007_20205) | 4443..5108 | + | 666 | WP_012187180.1 | L,D-transpeptidase | - |
| M8007_RS20210 (M8007_20210) | 5185..5796 | - | 612 | WP_007803430.1 | hypothetical protein | - |
| M8007_RS20215 (M8007_20215) | 6140..6748 | + | 609 | WP_012187178.1 | EF-hand domain-containing protein | - |
| M8007_RS20220 (M8007_20220) | 6889..7275 | + | 387 | WP_007803435.1 | DUF302 domain-containing protein | - |
| M8007_RS20225 (M8007_20225) | 7381..8301 | + | 921 | WP_007803438.1 | prolipoprotein diacylglyceryl transferase | - |
| M8007_RS20230 (M8007_20230) | 8437..10725 | + | 2289 | WP_222864283.1 | copper-translocating P-type ATPase | - |
| M8007_RS20235 (M8007_20235) | 10774..12111 | + | 1338 | WP_007803442.1 | APC family permease | - |
| M8007_RS20240 (M8007_20240) | 12119..12763 | - | 645 | WP_007803445.1 | hypothetical protein | - |
| M8007_RS20245 (M8007_20245) | 12873..12992 | + | 120 | Protein_13 | IS5/IS1182 family transposase | - |
| M8007_RS20250 (M8007_20250) | 12980..13702 | + | 723 | WP_007803446.1 | cytochrome c biogenesis protein CcdA | - |
| M8007_RS20255 (M8007_20255) | 13917..14564 | + | 648 | Protein_15 | L,D-transpeptidase | - |
| M8007_RS20260 (M8007_20260) | 14612..14884 | - | 273 | WP_012187176.1 | hypothetical protein | - |
| M8007_RS20265 (M8007_20265) | 15077..17434 | + | 2358 | Protein_17 | cation-translocating P-type ATPase | - |
| M8007_RS20270 (M8007_20270) | 17428..17703 | - | 276 | WP_012187175.1 | hypothetical protein | - |
| M8007_RS20275 (M8007_20275) | 17908..18258 | + | 351 | WP_007803454.1 | Transcriptional regulator MntR | VF |
| M8007_RS20280 (M8007_20280) | 18520..20089 | - | 1570 | Protein_20 | apolipoprotein N-acyltransferase | - |
| M8007_RS20285 (M8007_20285) | 20086..20559 | - | 474 | WP_007803461.1 | Lipoprotein signal peptidase | VF |
| M8007_RS20290 (M8007_20290) | 20564..21346 | - | 783 | WP_007803463.1 | ZIP family metal transporter | - |
| M8007_RS20295 (M8007_20295) | 21369..21827 | - | 459 | WP_007803465.1 | DUF411 domain-containing protein | - |
| M8007_RS20300 (M8007_20300) | 21831..23204 | - | 1374 | WP_007803467.1 | M23 family metallopeptidase | - |
| M8007_RS20305 (M8007_20305) | 23201..23827 | - | 627 | WP_007803468.1 | SCO family protein | - |
| M8007_RS20310 (M8007_20310) | 23827..24294 | - | 468 | WP_028288644.1 | copper chaperone PCu(A)C | - |
| M8007_RS20315 (M8007_20315) | 24320..24979 | - | 660 | WP_007803472.1 | thioredoxin domain-containing protein | - |
| M8007_RS20320 (M8007_20320) | 24976..25398 | - | 423 | WP_007803474.1 | disulfide bond formation protein B | - |
| M8007_RS20325 (M8007_20325) | 25404..25970 | - | 567 | WP_007803475.1 | SCO family protein | - |
| M8007_RS20330 (M8007_20330) | 26184..26612 | + | 429 | WP_007803476.1 | IS607 family transposase ISChh1 | Transposase |
| M8007_RS20335 (M8007_20335) | 26695..27315 | + | 621 | WP_008327361.1 | cation transporter | - |
| M8007_RS20340 (M8007_20340) | 27385..27948 | + | 564 | WP_007803479.1 | transglutaminase-like domain-containing protein | - |
| M8007_RS20345 (M8007_20345) | 27938..28903 | + | 966 | WP_007803480.1 | cation diffusion facilitator family transporter | - |
| M8007_RS20350 (M8007_20350) | 28875..29186 | + | 312 | WP_012187173.1 | STAS/SEC14 domain-containing protein | - |
| M8007_RS20355 (M8007_20355) | 29539..30285 | + | 747 | WP_012187317.1 | hypothetical protein | - |
| M8007_RS20360 (M8007_20360) | 30474..30824 | - | 351 | WP_007803330.1 | metalloregulator ArsR/SmtB family transcription factor | - |
| M8007_RS20365 (M8007_20365) | 30888..31739 | + | 852 | WP_007803328.1 | cation diffusion facilitator family transporter | - |
| M8007_RS20370 (M8007_20370) | 31900..32127 | - | 228 | WP_012187318.1 | hypothetical protein | - |
| M8007_RS20375 (M8007_20375) | 32295..32552 | - | 258 | WP_012187319.1 | helix-turn-helix domain-containing protein | - |
| M8007_RS20380 (M8007_20380) | 32677..32925 | - | 249 | WP_044029511.1 | hypothetical protein | - |
| M8007_RS20385 (M8007_20385) | 33141..33494 | + | 354 | WP_012187321.1 | hypothetical protein | - |
| M8007_RS20390 (M8007_20390) | 33538..34152 | + | 615 | WP_012187322.1 | lytic transglycosylase domain-containing protein | - |
| M8007_RS20395 (M8007_20395) | 34149..34442 | + | 294 | WP_012187323.1 | Type IV secretion system protein virB2 | VF |
| M8007_RS20400 (M8007_20400) | 34435..34713 | + | 279 | WP_012187324.1 | hypothetical protein | VF |
| M8007_RS20405 (M8007_20405) | 34703..37066 | + | 2364 | WP_012187325.1 | type IV secretion system DNA-binding domain-containing protein | - |
| M8007_RS20410 (M8007_20410) | 37063..37230 | + | 168 | WP_012187326.1 | hypothetical protein | - |
| M8007_RS20415 (M8007_20415) | 37220..38374 | + | 1155 | WP_012187327.1 | lytic transglycosylase domain-containing protein | - |
| M8007_RS20420 (M8007_20420) | 38374..39183 | + | 810 | WP_012187328.1 | type IV secretion system protein | - |
| M8007_RS20425 (M8007_20425) | 39200..39853 | + | 654 | WP_012187329.1 | type IV secretion system protein | - |
| M8007_RS20430 (M8007_20430) | 39856..40551 | + | 696 | WP_012187330.1 | Protein virB9 | VF |
| M8007_RS20435 (M8007_20435) | 40548..41927 | + | 1380 | WP_012187331.1 | Type IV secretion system protein PtlG | VF |
| M8007_RS20440 (M8007_20440) | 41932..42918 | + | 987 | WP_012187332.1 | Type IV secretion system protein VirB11 | VF |
| M8007_RS20445 (M8007_20445) | 42915..43109 | + | 195 | WP_044029492.1 | DUF4177 domain-containing protein | - |
| M8007_RS20450 (M8007_20450) | 43106..43516 | + | 411 | WP_012187333.1 | hypothetical protein | - |
| M8007_RS20455 (M8007_20455) | 43529..44605 | + | 1077 | WP_012187334.1 | type IV secretion system protein | - |
| M8007_RS20460 (M8007_20460) | 44766..46670 | - | 1905 | WP_012187335.1 | AAA family ATPase | - |
| M8007_RS20465 (M8007_20465) | 46663..47169 | - | 507 | WP_099911246.1 | hypothetical protein | - |
| M8007_RS20470 (M8007_20470) | 47166..48362 | - | 1197 | WP_044029494.1 | hypothetical protein | - |
| M8007_RS20475 (M8007_20475) | 48597..50597 | - | 2001 | WP_044029496.1 | Protein VirD4 | VF |
| M8007_RS20480 (M8007_20480) | 50606..52939 | - | 2334 | WP_012187338.1 | T-DNA border endonuclease VirD2 | Relaxase |
| M8007_RS20485 (M8007_20485) | 52926..53519 | - | 594 | WP_012187339.1 | transposase | - |
| M8007_RS20490 (M8007_20490) | 54081..54287 | - | 207 | WP_007120662.1 | hypothetical protein | - |
| M8007_RS20495 (M8007_20495) | 54827..55843 | - | 1017 | WP_241389327.1 | GSU2403 family nucleotidyltransferase fold protein | - |
| M8007_RS20500 (M8007_20500) | 55976..56905 | - | 930 | WP_012187341.1 | DUF2493 domain-containing protein | - |
| M8007_RS20505 (M8007_20505) | 57597..58277 | + | 681 | WP_012187342.1 | SOS response-associated peptidase family protein | - |
| M8007_RS20510 (M8007_20510) | 58267..58854 | + | 588 | WP_012187343.1 | hypothetical protein | - |
| M8007_RS20515 (M8007_20515) | 58781..60280 | + | 1500 | WP_012187344.1 | DNA polymerase Y family protein | - |
| M8007_RS20520 (M8007_20520) | 60277..63627 | + | 3351 | WP_012187345.1 | error-prone DNA polymerase | - |
| M8007_RS20525 (M8007_20525) | 63708..64436 | - | 729 | WP_012187346.1 | DUF736 family protein | - |
| M8007_RS20530 (M8007_20530) | 64561..64863 | - | 303 | WP_012187347.1 | hypothetical protein | - |
| M8007_RS20535 (M8007_20535) | 64964..65425 | - | 462 | WP_012187348.1 | hypothetical protein | - |
| M8007_RS20540 (M8007_20540) | 65427..65813 | - | 387 | WP_012187349.1 | hypothetical protein | - |
| M8007_RS20545 (M8007_20545) | 65935..67719 | - | 1785 | Protein_73 | strawberry notch C-terminal domain-containing protein | - |
| M8007_RS20550 (M8007_20550) | 67844..69370 | + | 1527 | WP_012187105.1 | tyrosine-type recombinase/integrase | - |
| M8007_RS20555 (M8007_20555) | 69367..70278 | + | 912 | WP_012187106.1 | Tyrosine recombinase XerD | VF |
| M8007_RS20560 (M8007_20560) | 70275..71279 | + | 1005 | WP_012187107.1 | tyrosine-type recombinase/integrase | - |
| M8007_RS20565 (M8007_20565) | 71318..73759 | - | 2442 | WP_012187108.1 | DEAD/DEAH box helicase | - |
| M8007_RS20570 (M8007_20570) | 74003..76513 | - | 2511 | WP_012187351.1 | strawberry notch family protein | - |
| M8007_RS20575 (M8007_20575) | 76638..76808 | - | 171 | WP_249994553.1 | hypothetical protein | - |
| M8007_RS20580 (M8007_20580) | 76783..76929 | - | 147 | WP_153218031.1 | hypothetical protein | - |
| M8007_RS20585 (M8007_20585) | 77306..78166 | - | 861 | WP_012187352.1 | LysR family transcriptional regulator | - |
| M8007_RS20590 (M8007_20590) | 78323..79042 | + | 720 | WP_012187353.1 | hypothetical protein | - |
| M8007_RS20595 (M8007_20595) | 79364..79882 | - | 519 | WP_012187354.1 | type II toxin-antitoxin system YhaV family toxin | - |
| M8007_RS20600 (M8007_20600) | 79879..80205 | - | 327 | WP_005668772.1 | type II toxin-antitoxin system PrlF family antitoxin | - |
| M8007_RS20605 (M8007_20605) | 80332..80985 | - | 654 | WP_012187355.1 | hypothetical protein | - |
| M8007_RS20610 (M8007_20610) | 80985..81677 | - | 693 | WP_012187356.1 | hypothetical protein | - |
| M8007_RS20615 (M8007_20615) | 81752..83734 | - | 1983 | WP_012187357.1 | ParB/RepB/Spo0J family partition protein | - |
| M8007_RS20620 (M8007_20620) | 83891..84280 | - | 390 | WP_012187358.1 | DUF3768 domain-containing protein | - |
| M8007_RS20625 (M8007_20625) | 84368..84577 | - | 210 | WP_012187359.1 | DUF6330 family protein | - |
| M8007_RS20630 (M8007_20630) | 84601..85539 | - | 939 | WP_012187360.1 | zincin-like metallopeptidase domain-containing protein | - |
| M8007_RS20635 (M8007_20635) | 85580..86065 | - | 486 | WP_012187361.1 | hypothetical protein | - |
| M8007_RS20640 (M8007_20640) | 86344..87546 | + | 1203 | WP_012187362.1 | Fic family protein | - |
| M8007_RS20645 (M8007_20645) | 87678..88913 | - | 1236 | WP_012187363.1 | plasmid replication protein RepC | - |
| M8007_RS20650 (M8007_20650) | 89091..90107 | - | 1017 | WP_012187364.1 | plasmid partitioning protein RepB | - |
| M8007_RS20655 (M8007_20655) | 90104..91291 | - | 1188 | WP_012187365.1 | Sporulation initiation inhibitor protein Soj | VF |
| M8007_RS20660 (M8007_20660) | 91605..91832 | + | 228 | WP_012187366.1 | AbrB/MazE/SpoVT family DNA-binding domain-containing protein | Antitoxin Detail |
| M8007_RS20665 (M8007_20665) | 91822..92217 | + | 396 | WP_012187367.1 | PIN domain-containing protein | Toxin Detail |
| M8007_RS20670 (M8007_20670) | 92201..93097 | - | 897 | WP_012187368.1 | Tn3 family transposase ISPsy42 | Transposase |
| M8007_RS20675 (M8007_20675) | 93156..94274 | - | 1119 | WP_012187369.1 | tyrosine-type recombinase/integrase | - |
| M8007_RS20680 (M8007_20680) | 94401..95285 | + | 885 | WP_249994546.1 | DUF1403 family protein | - |
| M8007_RS20685 (M8007_20685) | 95288..95905 | + | 618 | WP_012187055.1 | SMC-Scp complex subunit ScpB | - |
| M8007_RS20690 (M8007_20690) | 95955..96218 | + | 264 | WP_012187054.1 | WGR domain-containing protein | - |
| M8007_RS20695 (M8007_20695) | 96288..97406 | + | 1119 | WP_012187053.1 | Fic family protein | - |
| M8007_RS20700 (M8007_20700) | 97403..98125 | - | 723 | WP_012187052.1 | hypothetical protein | - |
| M8007_RS20705 (M8007_20705) | 98236..98993 | + | 758 | WP_085930427.1 | IS5 family transposase IS1248A | Transposase |
| M8007_RS20710 (M8007_20710) | 99096..100124 | + | 1029 | WP_012187049.1 | IS110 family transposase ISRhru3 | Transposase |
| M8007_RS20715 (M8007_20715) | 100520..100660 | - | 141 | Protein_107 | ubiquinol-cytochrome c reductase iron-sulfur subunit N-terminal domain-containing protein | - |
| M8007_RS20720 (M8007_20720) | 100716..100904 | + | 189 | WP_157865443.1 | hypothetical protein | - |
| M8007_RS20725 (M8007_20725) | 100990..101352 | + | 363 | WP_012178914.1 | IS630 family transposase ISSpo6 | Transposase |
| M8007_RS20730 (M8007_20730) | 101369..101944 | + | 576 | WP_203426276.1 | IS630 family transposase ISSpo6 | Transposase |
| M8007_RS20735 (M8007_20735) | 101916..102344 | - | 429 | WP_012187047.1 | hypothetical protein | - |
| M8007_RS20740 (M8007_20740) | 102420..102986 | + | 567 | WP_012187046.1 | Crp/Fnr family transcriptional regulator | - |
| M8007_RS20745 (M8007_20745) | 102992..103444 | - | 453 | WP_012187045.1 | DUF411 domain-containing protein | - |
| M8007_RS20750 (M8007_20750) | 103533..104354 | - | 822 | Protein_114 | sterol desaturase family protein | - |
| M8007_RS20755 (M8007_20755) | 104358..105344 | - | 987 | WP_012187043.1 | cation diffusion facilitator family transporter | - |
| M8007_RS20760 (M8007_20760) | 105346..106008 | - | 663 | WP_012187042.1 | VTT domain-containing protein | - |
| M8007_RS20765 (M8007_20765) | 106012..106461 | - | 450 | WP_012187041.1 | hypothetical protein | - |
| M8007_RS20770 (M8007_20770) | 106623..107060 | - | 438 | WP_012187040.1 | hypothetical protein | - |
| M8007_RS20775 (M8007_20775) | 107149..107622 | - | 474 | WP_008327269.1 | rhodanese-like domain-containing protein | - |
| M8007_RS20780 (M8007_20780) | 107811..108533 | + | 723 | WP_007803380.1 | Transcriptional regulatory protein OmpR | VF |
| M8007_RS20785 (M8007_20785) | 108533..109999 | + | 1467 | WP_009807480.1 | ATP-binding protein | - |
| M8007_RS20790 (M8007_20790) | 109935..110240 | + | 306 | WP_222481198.1 | SHOCT domain-containing protein | - |
| M8007_RS20795 (M8007_20795) | 110306..112306 | + | 2001 | WP_012187039.1 | Cytochrome c-type biogenesis protein CcmF | VF |
| M8007_RS20800 (M8007_20800) | 112315..112881 | + | 567 | WP_009807483.1 | DsbE family thiol:disulfide interchange protein | - |
| M8007_RS20805 (M8007_20805) | 112878..113351 | + | 474 | WP_009807484.1 | cytochrome c-type biogenesis protein CcmH | - |
| M8007_RS20810 (M8007_20810) | 113348..114499 | + | 1152 | WP_008327282.1 | c-type cytochrome biogenesis protein CcmI | - |
| M8007_RS20815 (M8007_20815) | 114528..116657 | - | 2130 | WP_009807485.1 | protein-disulfide reductase DsbD family protein | - |
| M8007_RS20820 (M8007_20820) | 116941..117243 | - | 303 | WP_007803398.1 | DUF2933 domain-containing protein | - |
| M8007_RS20825 (M8007_20825) | 117399..117959 | + | 561 | WP_009807486.1 | L,D-transpeptidase | - |
| M8007_RS20830 (M8007_20830) | 117988..118446 | + | 459 | WP_007803401.1 | cytochrome c | - |
| M8007_RS20835 (M8007_20835) | 118816..119409 | + | 594 | WP_007803403.1 | cytochrome c | - |
| M8007_RS20840 (M8007_20840) | 119412..120329 | + | 918 | WP_007803405.1 | cytochrome c | - |
| M8007_RS20845 (M8007_20845) | 120373..121767 | + | 1395 | WP_007803406.1 | multicopper oxidase family protein | - |
| M8007_RS20850 (M8007_20850) | 121764..122246 | + | 483 | WP_007803408.1 | cytochrome c | - |
| M8007_RS20855 (M8007_20855) | 122248..122979 | + | 732 | WP_009807488.1 | DsbA family protein | - |
| M8007_RS20860 (M8007_20860) | 123022..123222 | - | 201 | WP_007803412.1 | heavy-metal-associated domain-containing protein | - |
| M8007_RS20865 (M8007_20865) | 123376..125886 | + | 2511 | WP_012187038.1 | heavy metal translocating P-type ATPase | - |
| M8007_RS20870 (M8007_20870) | 125899..126297 | + | 399 | WP_007803416.1 | Cu(I)-responsive transcriptional regulator | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|