MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 126304 bp
Accession: NZ_CP097543 Location: 1..126304 Organism: Dinoroseobacter shibae strain DSM 112351 Replicon: plasmid pDSHI03
Accession: NZ_CP097543 Location: 1..126304 Organism: Dinoroseobacter shibae strain DSM 112351 Replicon: plasmid pDSHI03
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| M8008_RS20155 (M8008_20155) | 12..776 | - | 765 | WP_012187037.1 | glutaredoxin | - |
| M8008_RS20160 (M8008_20160) | 789..1625 | - | 837 | WP_012187184.1 | DUF305 domain-containing protein | - |
| M8008_RS22240 | 1805..2386 | + | 582 | WP_012187183.1 | L,D-transpeptidase | - |
| M8008_RS20170 (M8008_20170) | 2512..3774 | + | 1263 | WP_007803424.1 | multicopper oxidase family protein | - |
| M8008_RS20175 (M8008_20175) | 3888..4400 | + | 513 | WP_012187181.1 | disulfide bond formation protein B | - |
| M8008_RS20180 (M8008_20180) | 4443..5108 | + | 666 | WP_012187180.1 | L,D-transpeptidase | - |
| M8008_RS20185 (M8008_20185) | 5185..5796 | - | 612 | WP_007803430.1 | hypothetical protein | - |
| M8008_RS20190 (M8008_20190) | 6140..6748 | + | 609 | WP_012187178.1 | EF-hand domain-containing protein | - |
| M8008_RS20195 (M8008_20195) | 6889..7275 | + | 387 | WP_007803435.1 | DUF302 domain-containing protein | - |
| M8008_RS20200 (M8008_20200) | 7381..8301 | + | 921 | WP_007803438.1 | prolipoprotein diacylglyceryl transferase | - |
| M8008_RS20205 (M8008_20205) | 8437..10725 | + | 2289 | WP_222864283.1 | copper-translocating P-type ATPase | - |
| M8008_RS20210 (M8008_20210) | 10774..12111 | + | 1338 | WP_007803442.1 | APC family permease | - |
| M8008_RS20215 (M8008_20215) | 12119..12763 | - | 645 | WP_007803445.1 | hypothetical protein | - |
| M8008_RS20220 (M8008_20220) | 12873..12992 | + | 120 | Protein_13 | IS5/IS1182 family transposase | - |
| M8008_RS20225 (M8008_20225) | 12980..13702 | + | 723 | WP_007803446.1 | cytochrome c biogenesis protein CcdA | - |
| M8008_RS20230 (M8008_20230) | 13896..14561 | + | 666 | WP_007803448.1 | L,D-transpeptidase | - |
| M8008_RS20235 (M8008_20235) | 14609..14881 | - | 273 | WP_012187176.1 | hypothetical protein | - |
| M8008_RS20240 (M8008_20240) | 15074..17428 | + | 2355 | WP_207287124.1 | cation-translocating P-type ATPase | - |
| M8008_RS20245 (M8008_20245) | 17422..17697 | - | 276 | WP_012187175.1 | hypothetical protein | - |
| M8008_RS20250 (M8008_20250) | 17795..18253 | + | 459 | WP_008327326.1 | Transcriptional regulator MntR | VF |
| M8008_RS20255 (M8008_20255) | 18515..20086 | - | 1572 | WP_009807490.1 | apolipoprotein N-acyltransferase | - |
| M8008_RS20260 (M8008_20260) | 20083..20556 | - | 474 | WP_007803461.1 | Lipoprotein signal peptidase | VF |
| M8008_RS20265 (M8008_20265) | 20561..21343 | - | 783 | WP_007803463.1 | ZIP family metal transporter | - |
| M8008_RS20270 (M8008_20270) | 21366..21824 | - | 459 | WP_007803465.1 | DUF411 domain-containing protein | - |
| M8008_RS20275 (M8008_20275) | 21828..23201 | - | 1374 | WP_007803467.1 | M23 family metallopeptidase | - |
| M8008_RS20280 (M8008_20280) | 23198..23824 | - | 627 | WP_007803468.1 | SCO family protein | - |
| M8008_RS20285 (M8008_20285) | 23824..24291 | - | 468 | WP_028288644.1 | copper chaperone PCu(A)C | - |
| M8008_RS20290 (M8008_20290) | 24317..24976 | - | 660 | WP_007803472.1 | thioredoxin domain-containing protein | - |
| M8008_RS20295 (M8008_20295) | 24973..25395 | - | 423 | WP_007803474.1 | disulfide bond formation protein B | - |
| M8008_RS20300 (M8008_20300) | 25401..25967 | - | 567 | WP_007803475.1 | SCO family protein | - |
| M8008_RS20305 (M8008_20305) | 26181..26609 | + | 429 | WP_007803476.1 | IS607 family transposase ISChh1 | Transposase |
| M8008_RS20310 (M8008_20310) | 26692..27312 | + | 621 | WP_008327361.1 | cation transporter | - |
| M8008_RS20315 (M8008_20315) | 27382..27945 | + | 564 | WP_007803479.1 | transglutaminase-like domain-containing protein | - |
| M8008_RS20320 (M8008_20320) | 27935..28900 | + | 966 | WP_007803480.1 | cation diffusion facilitator family transporter | - |
| M8008_RS20325 (M8008_20325) | 28872..29183 | + | 312 | WP_012187173.1 | STAS/SEC14 domain-containing protein | - |
| M8008_RS20330 (M8008_20330) | 29536..30282 | + | 747 | WP_012187317.1 | hypothetical protein | - |
| M8008_RS20335 (M8008_20335) | 30471..30821 | - | 351 | WP_007803330.1 | metalloregulator ArsR/SmtB family transcription factor | - |
| M8008_RS20340 (M8008_20340) | 30885..31736 | + | 852 | WP_007803328.1 | cation diffusion facilitator family transporter | - |
| M8008_RS20345 (M8008_20345) | 31897..32124 | - | 228 | WP_012187318.1 | hypothetical protein | - |
| M8008_RS20350 (M8008_20350) | 32292..32549 | - | 258 | WP_012187319.1 | helix-turn-helix domain-containing protein | - |
| M8008_RS20355 (M8008_20355) | 32674..32922 | - | 249 | WP_044029511.1 | hypothetical protein | - |
| M8008_RS20360 (M8008_20360) | 33138..33491 | + | 354 | WP_012187321.1 | hypothetical protein | - |
| M8008_RS20365 (M8008_20365) | 33535..34149 | + | 615 | WP_012187322.1 | lytic transglycosylase domain-containing protein | - |
| M8008_RS20370 (M8008_20370) | 34146..34439 | + | 294 | WP_012187323.1 | Type IV secretion system protein virB2 | VF |
| M8008_RS20375 (M8008_20375) | 34432..34710 | + | 279 | WP_012187324.1 | hypothetical protein | VF |
| M8008_RS20380 (M8008_20380) | 34700..37063 | + | 2364 | WP_012187325.1 | type IV secretion system DNA-binding domain-containing protein | - |
| M8008_RS20385 (M8008_20385) | 37060..37227 | + | 168 | WP_012187326.1 | hypothetical protein | - |
| M8008_RS20390 (M8008_20390) | 37217..38371 | + | 1155 | WP_012187327.1 | lytic transglycosylase domain-containing protein | - |
| M8008_RS20395 (M8008_20395) | 38371..39180 | + | 810 | WP_012187328.1 | type IV secretion system protein | - |
| M8008_RS20400 (M8008_20400) | 39197..39850 | + | 654 | WP_012187329.1 | type IV secretion system protein | - |
| M8008_RS20405 (M8008_20405) | 39853..40548 | + | 696 | WP_012187330.1 | Protein virB9 | VF |
| M8008_RS20410 (M8008_20410) | 40545..41924 | + | 1380 | WP_012187331.1 | Type IV secretion system protein PtlG | VF |
| M8008_RS20415 (M8008_20415) | 41929..42915 | + | 987 | WP_012187332.1 | Type IV secretion system protein VirB11 | VF |
| M8008_RS20420 (M8008_20420) | 42912..43106 | + | 195 | WP_044029492.1 | DUF4177 domain-containing protein | - |
| M8008_RS20425 (M8008_20425) | 43103..43513 | + | 411 | WP_012187333.1 | hypothetical protein | - |
| M8008_RS20430 (M8008_20430) | 43526..44602 | + | 1077 | WP_012187334.1 | type IV secretion system protein | - |
| M8008_RS20435 (M8008_20435) | 44763..46667 | - | 1905 | WP_012187335.1 | AAA family ATPase | - |
| M8008_RS20440 (M8008_20440) | 46660..47166 | - | 507 | WP_099911246.1 | hypothetical protein | - |
| M8008_RS20445 (M8008_20445) | 47163..48359 | - | 1197 | WP_044029494.1 | hypothetical protein | - |
| M8008_RS20450 (M8008_20450) | 48594..50594 | - | 2001 | WP_044029496.1 | Protein VirD4 | VF |
| M8008_RS20455 (M8008_20455) | 50603..52936 | - | 2334 | WP_012187338.1 | T-DNA border endonuclease VirD2 | Relaxase |
| M8008_RS20460 (M8008_20460) | 52923..53516 | - | 594 | WP_012187339.1 | transposase | - |
| M8008_RS20465 (M8008_20465) | 54078..54284 | - | 207 | WP_007120662.1 | hypothetical protein | - |
| M8008_RS20470 (M8008_20470) | 54824..55840 | - | 1017 | WP_241389327.1 | GSU2403 family nucleotidyltransferase fold protein | - |
| M8008_RS20475 (M8008_20475) | 55973..56902 | - | 930 | WP_012187341.1 | DUF2493 domain-containing protein | - |
| M8008_RS20480 (M8008_20480) | 57594..58274 | + | 681 | WP_012187342.1 | SOS response-associated peptidase family protein | - |
| M8008_RS20485 (M8008_20485) | 58264..58851 | + | 588 | WP_012187343.1 | hypothetical protein | - |
| M8008_RS20490 (M8008_20490) | 58778..60277 | + | 1500 | WP_012187344.1 | DNA polymerase Y family protein | - |
| M8008_RS20495 (M8008_20495) | 60274..63624 | + | 3351 | WP_012187345.1 | error-prone DNA polymerase | - |
| M8008_RS20500 (M8008_20500) | 63705..64433 | - | 729 | WP_012187346.1 | DUF736 family protein | - |
| M8008_RS20505 (M8008_20505) | 64558..64860 | - | 303 | WP_012187347.1 | hypothetical protein | - |
| M8008_RS20510 (M8008_20510) | 64961..65422 | - | 462 | WP_012187348.1 | hypothetical protein | - |
| M8008_RS20515 (M8008_20515) | 65424..65810 | - | 387 | WP_012187349.1 | hypothetical protein | - |
| M8008_RS20520 (M8008_20520) | 65932..67716 | - | 1785 | Protein_73 | strawberry notch C-terminal domain-containing protein | - |
| M8008_RS20525 (M8008_20525) | 67841..69367 | + | 1527 | WP_012187105.1 | tyrosine-type recombinase/integrase | - |
| M8008_RS20530 (M8008_20530) | 69364..70275 | + | 912 | WP_012187106.1 | Tyrosine recombinase XerD | VF |
| M8008_RS20535 (M8008_20535) | 70272..71276 | + | 1005 | WP_012187107.1 | tyrosine-type recombinase/integrase | - |
| M8008_RS20540 (M8008_20540) | 71315..73756 | - | 2442 | WP_012187108.1 | DEAD/DEAH box helicase | - |
| M8008_RS20545 (M8008_20545) | 74000..76510 | - | 2511 | WP_012187351.1 | strawberry notch family protein | - |
| M8008_RS20550 (M8008_20550) | 76635..76805 | - | 171 | WP_249994553.1 | hypothetical protein | - |
| M8008_RS20555 (M8008_20555) | 76780..76926 | - | 147 | WP_153218031.1 | hypothetical protein | - |
| M8008_RS20560 (M8008_20560) | 77303..78163 | - | 861 | WP_012187352.1 | LysR family transcriptional regulator | - |
| M8008_RS20565 (M8008_20565) | 78320..79039 | + | 720 | WP_012187353.1 | hypothetical protein | - |
| M8008_RS20570 (M8008_20570) | 79361..79879 | - | 519 | WP_012187354.1 | type II toxin-antitoxin system YhaV family toxin | - |
| M8008_RS20575 (M8008_20575) | 79876..80202 | - | 327 | WP_005668772.1 | type II toxin-antitoxin system PrlF family antitoxin | - |
| M8008_RS20580 (M8008_20580) | 80329..80982 | - | 654 | WP_012187355.1 | hypothetical protein | - |
| M8008_RS20585 (M8008_20585) | 80982..81674 | - | 693 | WP_012187356.1 | hypothetical protein | - |
| M8008_RS20590 (M8008_20590) | 81749..83731 | - | 1983 | WP_012187357.1 | ParB/RepB/Spo0J family partition protein | - |
| M8008_RS20595 (M8008_20595) | 83888..84277 | - | 390 | WP_012187358.1 | DUF3768 domain-containing protein | - |
| M8008_RS20600 (M8008_20600) | 84365..84574 | - | 210 | WP_012187359.1 | DUF6330 family protein | - |
| M8008_RS20605 (M8008_20605) | 84598..85536 | - | 939 | WP_012187360.1 | zincin-like metallopeptidase domain-containing protein | - |
| M8008_RS20610 (M8008_20610) | 85577..86062 | - | 486 | WP_012187361.1 | hypothetical protein | - |
| M8008_RS20615 (M8008_20615) | 86341..87543 | + | 1203 | WP_012187362.1 | Fic family protein | - |
| M8008_RS20620 (M8008_20620) | 87675..88910 | - | 1236 | WP_012187363.1 | plasmid replication protein RepC | - |
| M8008_RS20625 (M8008_20625) | 89088..90104 | - | 1017 | WP_012187364.1 | plasmid partitioning protein RepB | - |
| M8008_RS20630 (M8008_20630) | 90101..91288 | - | 1188 | WP_012187365.1 | Sporulation initiation inhibitor protein Soj | VF |
| M8008_RS20635 (M8008_20635) | 91602..91829 | + | 228 | WP_012187366.1 | AbrB/MazE/SpoVT family DNA-binding domain-containing protein | Antitoxin Detail |
| M8008_RS20640 (M8008_20640) | 91819..92214 | + | 396 | WP_012187367.1 | PIN domain-containing protein | Toxin Detail |
| M8008_RS20645 (M8008_20645) | 92198..93094 | - | 897 | WP_012187368.1 | Tn3 family transposase ISPsy42 | Transposase |
| M8008_RS20650 (M8008_20650) | 93153..94271 | - | 1119 | WP_012187369.1 | tyrosine-type recombinase/integrase | - |
| M8008_RS20655 (M8008_20655) | 94398..95282 | + | 885 | WP_012187056.1 | DUF1403 family protein | - |
| M8008_RS20660 (M8008_20660) | 95285..95902 | + | 618 | WP_012187055.1 | SMC-Scp complex subunit ScpB | - |
| M8008_RS20665 (M8008_20665) | 95952..96215 | + | 264 | WP_012187054.1 | WGR domain-containing protein | - |
| M8008_RS20670 (M8008_20670) | 96285..97403 | + | 1119 | WP_012187053.1 | Fic family protein | - |
| M8008_RS20675 (M8008_20675) | 97400..98122 | - | 723 | WP_012187052.1 | hypothetical protein | - |
| M8008_RS20680 (M8008_20680) | 98233..98990 | + | 758 | WP_085930427.1 | IS5 family transposase IS1248A | Transposase |
| M8008_RS20685 (M8008_20685) | 99093..100121 | + | 1029 | WP_012187049.1 | IS110 family transposase ISRhru3 | Transposase |
| M8008_RS20690 (M8008_20690) | 100517..100657 | - | 141 | Protein_107 | ubiquinol-cytochrome c reductase iron-sulfur subunit N-terminal domain-containing protein | - |
| M8008_RS20695 (M8008_20695) | 100713..100901 | + | 189 | WP_157865443.1 | hypothetical protein | - |
| M8008_RS20700 (M8008_20700) | 100987..101349 | + | 363 | WP_012178914.1 | IS630 family transposase ISSpo6 | Transposase |
| M8008_RS20705 (M8008_20705) | 101366..101941 | + | 576 | WP_203426276.1 | IS630 family transposase ISSpo6 | Transposase |
| M8008_RS20710 (M8008_20710) | 101913..102341 | - | 429 | WP_012187047.1 | hypothetical protein | - |
| M8008_RS20715 (M8008_20715) | 102417..102983 | + | 567 | WP_012187046.1 | Crp/Fnr family transcriptional regulator | - |
| M8008_RS20720 (M8008_20720) | 102989..103441 | - | 453 | WP_012187045.1 | DUF411 domain-containing protein | - |
| M8008_RS20725 (M8008_20725) | 103530..104351 | - | 822 | Protein_114 | sterol desaturase family protein | - |
| M8008_RS20730 (M8008_20730) | 104355..105341 | - | 987 | WP_012187043.1 | cation diffusion facilitator family transporter | - |
| M8008_RS20735 (M8008_20735) | 105343..106005 | - | 663 | WP_012187042.1 | VTT domain-containing protein | - |
| M8008_RS20740 (M8008_20740) | 106009..106458 | - | 450 | WP_012187041.1 | hypothetical protein | - |
| M8008_RS20745 (M8008_20745) | 106620..107057 | - | 438 | WP_012187040.1 | hypothetical protein | - |
| M8008_RS20750 (M8008_20750) | 107146..107619 | - | 474 | WP_008327269.1 | rhodanese-like domain-containing protein | - |
| M8008_RS20755 (M8008_20755) | 107808..108530 | + | 723 | WP_007803380.1 | Transcriptional regulatory protein OmpR | VF |
| M8008_RS20760 (M8008_20760) | 108530..109996 | + | 1467 | WP_009807480.1 | ATP-binding protein | - |
| M8008_RS20765 (M8008_20765) | 109932..110237 | + | 306 | WP_222481198.1 | SHOCT domain-containing protein | - |
| M8008_RS20770 (M8008_20770) | 110303..112303 | + | 2001 | WP_012187039.1 | Cytochrome c-type biogenesis protein CcmF | VF |
| M8008_RS20775 (M8008_20775) | 112312..112878 | + | 567 | WP_009807483.1 | DsbE family thiol:disulfide interchange protein | - |
| M8008_RS20780 (M8008_20780) | 112875..113348 | + | 474 | WP_009807484.1 | cytochrome c-type biogenesis protein CcmH | - |
| M8008_RS20785 (M8008_20785) | 113345..114496 | + | 1152 | WP_008327282.1 | c-type cytochrome biogenesis protein CcmI | - |
| M8008_RS20790 (M8008_20790) | 114525..116654 | - | 2130 | WP_009807485.1 | protein-disulfide reductase DsbD family protein | - |
| M8008_RS20795 (M8008_20795) | 116938..117240 | - | 303 | WP_007803398.1 | DUF2933 domain-containing protein | - |
| M8008_RS20800 (M8008_20800) | 117396..117956 | + | 561 | WP_009807486.1 | L,D-transpeptidase | - |
| M8008_RS20805 (M8008_20805) | 117985..118443 | + | 459 | WP_007803401.1 | cytochrome c | - |
| M8008_RS20810 (M8008_20810) | 118813..119406 | + | 594 | WP_007803403.1 | cytochrome c | - |
| M8008_RS20815 (M8008_20815) | 119409..120326 | + | 918 | WP_007803405.1 | cytochrome c | - |
| M8008_RS20820 (M8008_20820) | 120370..121764 | + | 1395 | WP_007803406.1 | multicopper oxidase family protein | - |
| M8008_RS20825 (M8008_20825) | 121761..122243 | + | 483 | WP_007803408.1 | cytochrome c | - |
| M8008_RS20830 (M8008_20830) | 122245..122976 | + | 732 | WP_009807488.1 | DsbA family protein | - |
| M8008_RS20835 (M8008_20835) | 123019..123219 | - | 201 | WP_007803412.1 | heavy-metal-associated domain-containing protein | - |
| M8008_RS20840 (M8008_20840) | 123373..125883 | + | 2511 | WP_012187038.1 | heavy metal translocating P-type ATPase | - |
| M8008_RS20845 (M8008_20845) | 125896..126294 | + | 399 | WP_007803416.1 | Cu(I)-responsive transcriptional regulator | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|