MGE detailed information
MGE type: Conjugative plasmid MGE length: 42253 bp
Accession: NZ_CP097287 Location: 1..42253 Organism: Pseudomonas viridiflava strain JACO-C-5 Replicon: plasmid pDR208
Accession: NZ_CP097287 Location: 1..42253 Organism: Pseudomonas viridiflava strain JACO-C-5 Replicon: plasmid pDR208
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| M4X66_RS26985 | 46..2688 | + | 2643 | WP_081003828.1 | Type IV secretion system protein virB4 | VF |
| M4X66_RS26990 | 2688..3371 | + | 684 | WP_042934861.1 | type IV secretion system protein | - |
| M4X66_RS26995 | 3399..3611 | + | 213 | WP_017124976.1 | hypothetical protein | - |
| M4X66_RS27000 | 3604..4008 | + | 405 | WP_054076671.1 | hypothetical protein | - |
| M4X66_RS27005 | 3996..4859 | + | 864 | WP_017124978.1 | type IV secretion system protein | - |
| M4X66_RS27010 | 4859..5524 | + | 666 | WP_054076670.1 | type IV secretion system protein | - |
| M4X66_RS27015 | 5551..6342 | + | 792 | WP_054076669.1 | Type IV secretion system protein PtlF | VF |
| M4X66_RS27020 | 6345..7628 | + | 1284 | WP_054076668.1 | hypothetical protein | VF |
| M4X66_RS27025 | 7638..8666 | + | 1029 | WP_017124982.1 | Type IV secretion system protein VirB11 | VF |
| M4X66_RS27030 | 8650..9552 | + | 903 | WP_054076667.1 | hypothetical protein | VF |
| M4X66_RS27035 | 9582..9911 | + | 330 | WP_054076666.1 | TrbM/KikA/MpfK family conjugal transfer protein | - |
| M4X66_RS27040 | 9901..10506 | + | 606 | WP_081003826.1 | hypothetical protein | VF |
| M4X66_RS27045 | 10521..11003 | + | 483 | WP_054076665.1 | hypothetical protein | - |
| M4X66_RS27050 | 11048..11686 | + | 639 | WP_054076664.1 | hypothetical protein | - |
| M4X66_RS27055 | 12009..12764 | - | 756 | WP_230847846.1 | hypothetical protein | - |
| M4X66_RS27060 | 12837..15782 | - | 2946 | WP_054076663.1 | RecBCD enzyme subunit RecD | Relaxase |
| M4X66_RS27065 | 15793..17349 | - | 1557 | WP_054076662.1 | type IV secretion system DNA-binding domain-containing protein | - |
| M4X66_RS27070 | 17342..17734 | - | 393 | WP_017124989.1 | hypothetical protein | - |
| M4X66_RS27075 | 18151..18606 | + | 456 | WP_169880829.1 | conjugal transfer protein TraD | - |
| M4X66_RS27080 | 18603..19322 | + | 720 | WP_054076660.1 | StbB family protein | - |
| M4X66_RS27085 | 19326..19712 | + | 387 | WP_054076659.1 | hypothetical protein | - |
| M4X66_RS27090 | 19845..20648 | + | 804 | WP_054076658.1 | SprT-like domain-containing protein | - |
| M4X66_RS27095 | 21387..21650 | - | 264 | WP_081003825.1 | antirestriction protein ArdR | - |
| M4X66_RS27100 | 21905..22177 | - | 273 | WP_054076656.1 | hypothetical protein | - |
| M4X66_RS27105 | 22170..22499 | - | 330 | WP_054076655.1 | TrfB-related DNA-binding protein | - |
| M4X66_RS27110 | 22523..22945 | - | 423 | WP_054076654.1 | hypothetical protein | - |
| M4X66_RS27115 | 23000..23827 | - | 828 | WP_054076653.1 | DUF932 domain-containing protein | - |
| M4X66_RS27120 | 24026..24547 | - | 522 | WP_054076652.1 | single-stranded DNA-binding protein | - |
| M4X66_RS27125 | 24598..24984 | - | 387 | WP_054076651.1 | hypothetical protein | - |
| M4X66_RS27130 | 25626..25844 | - | 219 | WP_017124952.1 | hypothetical protein | - |
| M4X66_RS27135 | 26211..26633 | - | 423 | WP_054076687.1 | hypothetical protein | - |
| M4X66_RS27140 | 26645..26863 | - | 219 | WP_017124954.1 | hypothetical protein | - |
| M4X66_RS27145 | 26947..28440 | - | 1494 | WP_249584768.1 | DNA cytosine methyltransferase | - |
| M4X66_RS27150 | 28402..28662 | + | 261 | WP_249584769.1 | hypothetical protein | - |
| M4X66_RS27155 | 28681..28923 | - | 243 | WP_054076685.1 | hypothetical protein | - |
| M4X66_RS27160 | 29058..29360 | - | 303 | WP_155511826.1 | hypothetical protein | - |
| M4X66_RS27165 | 29366..29662 | - | 297 | WP_155511825.1 | hypothetical protein | - |
| M4X66_RS27170 | 29701..29853 | - | 153 | WP_155511824.1 | hypothetical protein | - |
| M4X66_RS27175 | 29856..30017 | - | 162 | WP_169880999.1 | hypothetical protein | - |
| M4X66_RS27180 | 30077..30295 | - | 219 | WP_169881000.1 | hypothetical protein | - |
| M4X66_RS27185 | 30505..30807 | + | 303 | WP_011475355.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| M4X66_RS27190 | 30804..31100 | + | 297 | WP_011475354.1 | putative addiction module antidote protein | Antitoxin Detail |
| M4X66_RS27195 | 31692..32120 | + | 429 | WP_054076689.1 | S24 family peptidase | - |
| M4X66_RS27200 | 32110..33393 | + | 1284 | WP_054076681.1 | Y-family DNA polymerase | - |
| M4X66_RS27205 | 34024..35292 | - | 1269 | WP_081003827.1 | DUF1173 family protein | - |
| M4X66_RS27210 | 35303..35665 | - | 363 | WP_054076680.1 | hypothetical protein | - |
| M4X66_RS27215 | 35847..36464 | - | 618 | WP_054076679.1 | hypothetical protein | - |
| M4X66_RS27220 | 36873..37502 | - | 630 | WP_054076678.1 | Tn3 family transposase TnpR_TnEc1 | Transposase |
| M4X66_RS27225 | 37767..38183 | - | 417 | WP_054076677.1 | hypothetical protein | - |
| M4X66_RS27230 | 38218..38520 | - | 303 | WP_155511822.1 | hypothetical protein | - |
| M4X66_RS27235 | 38517..38867 | - | 351 | WP_017124970.1 | TrfB-related DNA-binding protein | - |
| M4X66_RS27240 | 38864..39787 | - | 924 | WP_017124971.1 | ParB/RepB/Spo0J family partition protein | - |
| M4X66_RS27245 | 39799..40572 | - | 774 | WP_017124972.1 | ParA family protein | - |
| M4X66_RS27250 | 41512..41973 | + | 462 | WP_054076674.1 | TrbC/VirB2 family protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|