MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 143962 bp
Accession: NZ_CP096902 Location: 705984..849945 Organism: Escherichia coli strain RSHH22 Replicon: chromosome
Accession: NZ_CP096902 Location: 705984..849945 Organism: Escherichia coli strain RSHH22 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| M1Y13_RS03405 (701666) | 701666..702247 | + | 582 | WP_000105733.1 | esterase YqiA | - |
| M1Y13_RS03410 (702276) | 702276..704168 | + | 1893 | WP_000195296.1 | DNA topoisomerase IV subunit B | - |
| M1Y13_RS03415 (704213) | 704213..705082 | - | 870 | WP_001060171.1 | DUF2608 domain-containing protein | - |
| M1Y13_RS03420 (705096) | 705096..705830 | - | 735 | WP_001317336.1 | porin | - |
| M1Y13_RS03425 (705926) | 705926..707050 | - | 1125 | WP_000702013.1 | esterase-like activity of phytase family protein | - |
| M1Y13_RS03430 (707080) | 707080..707994 | - | 915 | WP_242386777.1 | carbohydrate kinase family protein | - |
| M1Y13_RS03435 (707999) | 707999..708997 | - | 999 | WP_001315863.1 | SIS domain-containing protein | - |
| M1Y13_RS03440 (708997) | 708997..710073 | - | 1077 | WP_001033125.1 | ADP-ribosylglycohydrolase family protein | - |
| M1Y13_RS03445 (710087) | 710087..710839 | - | 753 | WP_000619461.1 | GntR family transcriptional regulator | - |
| M1Y13_RS03450 (711126) | 711126..712457 | + | 1332 | WP_000778880.1 | MFS transporter | - |
| M1Y13_RS03455 (712501) | 712501..712815 | - | 315 | WP_000958598.1 | putative quinol monooxygenase | - |
| M1Y13_RS03460 (712846) | 712846..713427 | - | 582 | WP_000065440.1 | NADPH:quinone oxidoreductase MdaB | - |
| M1Y13_RS03465 (713746) | 713746..714078 | + | 333 | WP_000912123.1 | DUF2645 family protein | - |
| M1Y13_RS03470 (714124) | 714124..715473 | - | 1350 | WP_000673354.1 | quorum sensing histidine kinase QseC | - |
| M1Y13_RS03475 (715470) | 715470..716129 | - | 660 | WP_001221502.1 | Regulator of RpoS | VF |
| M1Y13_RS03480 (716281) | 716281..716673 | + | 393 | WP_000712658.1 | OB fold stress tolerance protein YgiW | - |
| M1Y13_RS03485 (716726) | 716726..717208 | + | 483 | WP_000183494.1 | GyrI-like domain-containing protein | - |
| M1Y13_RS03490 (717754) | 717754..720012 | + | 2259 | WP_001281881.1 | DNA topoisomerase IV subunit A | - |
| M1Y13_RS03495 (720245) | 720245..720982 | + | 738 | WP_000965717.1 | 1-acylglycerol-3-phosphate O-acyltransferase | - |
| M1Y13_RS03500 (721057) | 721057..722469 | + | 1413 | WP_000059395.1 | cell division protein FtsP | - |
| M1Y13_RS03505 (722580) | 722580..724799 | + | 2220 | WP_000095187.1 | YgiQ family radical SAM protein | - |
| M1Y13_RS03510 (724842) | 724842..725099 | - | 258 | WP_000848528.1 | lipoprotein YqhH | - |
| M1Y13_RS03515 (725150) | 725150..726076 | - | 927 | WP_000691598.1 | YbjP/YqhG family protein | - |
| M1Y13_RS03520 (726276) | 726276..727103 | - | 828 | WP_000013149.1 | 2,5-didehydrogluconate reductase DkgA | - |
| M1Y13_RS03525 (727208) | 727208..728371 | - | 1164 | WP_001058807.1 | alcohol dehydrogenase | - |
| M1Y13_RS03530 (728565) | 728565..729464 | + | 900 | WP_001298382.1 | DNA-binding transcriptional regulator YqhC | - |
| M1Y13_RS03535 (729504) | 729504..730163 | - | 660 | WP_000268414.1 | DedA family general envelope maintenance protein YghB | - |
| M1Y13_RS03540 (730303) | 730303..731490 | - | 1188 | WP_129542009.1 | cystathionine beta-lyase | - |
| M1Y13_RS03545 (731742) | 731742..732476 | + | 735 | WP_000527844.1 | tol-pal system-associated acyl-CoA thioesterase | - |
| M1Y13_RS03550 (732483) | 732483..732908 | + | 426 | WP_001240712.1 | TonB system transport protein ExbD | - |
| M1Y13_RS03555 (733180) | 733180..734064 | - | 885 | WP_129542008.1 | 3-phenylpropionate-dihydrodiol/cinnamic acid-dihydrodiol dehydrogenase | VF |
| M1Y13_RS03560 (734255) | 734255..734749 | + | 495 | WP_000439331.1 | TIGR00645 family protein | - |
| M1Y13_RS03565 (734789) | 734789..735829 | - | 1041 | WP_000262154.1 | L-glyceraldehyde 3-phosphate reductase | - |
| M1Y13_RS03570 (735986) | 735986..736873 | + | 888 | WP_001297303.1 | YghX family hydrolase | - |
| M1Y13_RS03575 (736992) | 736992..737279 | + | 288 | WP_001059136.1 | DUF2623 family protein YghW | - |
| M1Y13_RS03580 (737468) | 737468..738586 | + | 1119 | WP_000145410.1 | hydrogenase 2 small subunit | - |
| M1Y13_RS03585 (738589) | 738589..739575 | + | 987 | WP_001081870.1 | hydrogenase 2 operon protein HybA | - |
| M1Y13_RS03590 (739565) | 739565..740743 | + | 1179 | WP_129542007.1 | Ni/Fe-hydrogenase cytochrome b subunit | - |
| M1Y13_RS03595 (740740) | 740740..742443 | + | 1704 | WP_000083065.1 | hydrogenase 2 large subunit | - |
| M1Y13_RS03600 (742443) | 742443..742937 | + | 495 | WP_001221953.1 | HyaD/HybD family hydrogenase maturation endopeptidase | - |
| M1Y13_RS03605 (742930) | 742930..743418 | + | 489 | WP_000134014.1 | hydrogenase-2 assembly chaperone | - |
| M1Y13_RS03610 (743411) | 743411..743752 | + | 342 | WP_000544952.1 | hydrogenase maturation nickel metallochaperone HypA | - |
| M1Y13_RS03615 (743765) | 743765..744013 | + | 249 | WP_000334896.1 | hydrogenase maturation factor HybG | - |
| M1Y13_RS03620 (744135) | 744135..745115 | - | 981 | WP_000399659.1 | IS110 family transposase IS621 | Transposase |
| M1Y13_RS03625 (745415) | 745415..746281 | - | 867 | WP_001298746.1 | glutathione-dependent disulfide-bond oxidoreductase | - |
| M1Y13_RS03630 (746486) | 746486..748345 | + | 1860 | WP_001297309.1 | bifunctional glutathionylspermidine amidase/synthase | - |
| M1Y13_RS03635 (748638) | 748638..750137 | + | 1500 | WP_000933279.1 | inorganic phosphate transporter PitB | - |
| M1Y13_RS03640 (750186) | 750186..750878 | - | 693 | WP_001190773.1 | dTMP kinase | - |
| M1Y13_RS03645 (751052) | 751052..751765 | + | 714 | WP_001076237.1 | dTMP kinase | - |
| M1Y13_RS03650 (751797) | 751797..752555 | + | 759 | WP_000339532.1 | hypothetical protein | - |
| M1Y13_RS03655 (752601) | 752601..753950 | + | 1350 | WP_000896880.1 | lipopolysaccharide biosynthesis protein | - |
| M1Y13_RS03660 (753950) | 753950..754774 | + | 825 | WP_000984977.1 | hypothetical protein | - |
| M1Y13_RS03665 (754786) | 754786..755346 | + | 561 | WP_001315848.1 | YtfJ family protein | - |
| M1Y13_RS03670 (755377) | 755377..756447 | + | 1071 | WP_000779644.1 | LPS export ABC transporter permease LptF | - |
| M1Y13_RS03675 (756444) | 756444..757523 | + | 1080 | WP_001298753.1 | LPS export ABC transporter permease LptG | - |
| M1Y13_RS03680 (757558) | 757558..758730 | - | 1173 | WP_000524972.1 | 8-amino-7-oxononanoate synthase | VF |
| M1Y13_RS03685 (758730) | 758730..758978 | - | 249 | WP_000248097.1 | acyl carrier protein | - |
| M1Y13_RS03690 (759010) | 759010..759924 | - | 915 | WP_001077177.1 | NAD-dependent epimerase/dehydratase family protein | - |
| M1Y13_RS03695 (759921) | 759921..761642 | - | 1722 | WP_001390306.1 | 2-succinylbenzoate--CoA ligase | VF |
| M1Y13_RS03700 (762013) | 762013..763155 | + | 1143 | WP_000388786.1 | protein YghO | - |
| M1Y13_RS03705 (763162) | 763162..763926 | - | 765 | WP_001297764.1 | transcriptional regulator GlcC | - |
| M1Y13_RS03710 (764177) | 764177..765676 | + | 1500 | WP_000026117.1 | glycolate oxidase subunit GlcD | - |
| M1Y13_RS03715 (765676) | 765676..766728 | + | 1053 | WP_000943059.1 | glycolate oxidase subunit GlcE | - |
| M1Y13_RS03720 (766739) | 766739..767962 | + | 1224 | WP_001194682.1 | glycolate oxidase subunit GlcF | - |
| M1Y13_RS03725 (767967) | 767967..768371 | + | 405 | WP_000853256.1 | GlcG family protein | - |
| M1Y13_RS03730 (768393) | 768393..770564 | + | 2172 | WP_000084053.1 | malate synthase G | - |
| M1Y13_RS03735 (770920) | 770920..772602 | + | 1683 | WP_000259303.1 | glycolate permease GlcA | - |
| M1Y13_RS03740 (773087) | 773087..777655 | + | 4569 | WP_001034504.1 | hypothetical protein | VF |
| M1Y13_RS03745 (777795) | 777795..778604 | + | 810 | WP_129542006.1 | hypothetical protein | VF |
| M1Y13_RS03750 (778670) | 778670..779080 | + | 411 | WP_001349452.1 | type II secretion system pilot lipoprotein GspS-beta | - |
| M1Y13_RS03755 (779098) | 779098..780057 | + | 960 | WP_001317325.1 | hypothetical protein | VF |
| M1Y13_RS03760 (780087) | 780087..782147 | + | 2061 | WP_000498824.1 | hypothetical protein | VF |
| M1Y13_RS03765 (782147) | 782147..783640 | + | 1494 | WP_000249368.1 | hypothetical protein | VF |
| M1Y13_RS03770 (783640) | 783640..784863 | + | 1224 | WP_001173448.1 | hypothetical protein | VF |
| M1Y13_RS03775 (784880) | 784880..785335 | + | 456 | WP_001087296.1 | hypothetical protein | VF |
| M1Y13_RS03780 (785339) | 785339..785902 | + | 564 | WP_001115139.1 | hypothetical protein | VF |
| M1Y13_RS03785 (785899) | 785899..786270 | + | 372 | WP_000820125.1 | hypothetical protein | VF |
| M1Y13_RS03790 (786267) | 786267..786872 | + | 606 | WP_001255030.1 | hypothetical protein | VF |
| M1Y13_RS03795 (786869) | 786869..787846 | + | 978 | WP_000633239.1 | hypothetical protein | VF |
| M1Y13_RS03800 (787843) | 787843..789021 | + | 1179 | WP_000094989.1 | hypothetical protein | VF |
| M1Y13_RS03805 (789023) | 789023..789559 | + | 537 | WP_000942795.1 | hypothetical protein | VF |
| M1Y13_RS03810 (789840) | 789840..790682 | - | 843 | WP_001519083.1 | DUF4942 domain-containing protein | - |
| M1Y13_RS03815 (790767) | 790767..790964 | - | 198 | WP_000445282.1 | DUF957 domain-containing protein | - |
| M1Y13_RS03820 (790984) | 790984..791472 | - | 489 | Protein_749 | DUF5983 family protein | - |
| M1Y13_RS03825 (791469) | 791469..791846 | - | 378 | WP_001562089.1 | TA system toxin CbtA family protein | Toxin Detail |
| M1Y13_RS03830 (791936) | 791936..792304 | - | 369 | WP_001327592.1 | type IV toxin-antitoxin system YeeU family antitoxin | Antitoxin Detail |
| M1Y13_RS03835 (792467) | 792467..792688 | - | 222 | WP_000692300.1 | DUF987 domain-containing protein | - |
| M1Y13_RS03840 (792757) | 792757..793233 | - | 477 | WP_001186724.1 | RadC family protein | - |
| M1Y13_RS03845 (793249) | 793249..793728 | - | 480 | WP_000706981.1 | antirestriction protein | - |
| M1Y13_RS03850 (794067) | 794067..794885 | - | 819 | WP_001234639.1 | DUF932 domain-containing protein | - |
| M1Y13_RS03855 (795169) | 795169..795624 | - | 456 | WP_000581502.1 | IrmA family protein | - |
| M1Y13_RS03860 (795700) | 795700..798216 | - | 2517 | WP_263536084.1 | hypothetical protein | - |
| M1Y13_RS03865 (798337) | 798337..801459 | - | 3123 | WP_263536085.1 | autotransporter adhesin Ag43 | - |
| M1Y13_RS03870 (801793) | 801793..802665 | - | 873 | WP_129542002.1 | GTPase family protein | - |
| M1Y13_RS03875 (802764) | 802764..803636 | - | 873 | WP_073520669.1 | hypothetical protein | - |
| M1Y13_RS03880 (804990) | 804990..806218 | + | 1229 | WP_129542001.1 | IS3 family transposase IS2 | Transposase |
| M1Y13_RS03885 (807041) | 807041..807466 | + | 426 | WP_000422741.1 | IS66 family transposase ISEc23 | Transposase |
| M1Y13_RS03890 (807463) | 807463..807813 | + | 351 | WP_073520666.1 | IS66 family transposase ISEc23 | Transposase |
| M1Y13_RS03895 (807844) | 807844..808014 | + | 171 | Protein_764 | IS66 family transposase ISEc23 | Transposase |
| M1Y13_RS03900 (808063) | 808063..808419 | + | 357 | WP_164997231.1 | hypothetical protein | - |
| M1Y13_RS03905 (808495) | 808495..810114 | + | 1620 | WP_075262665.1 | ISL3 family transposase ISEc38 | Transposase |
| M1Y13_RS03910 (810171) | 810171..810476 | + | 306 | WP_129542000.1 | IS66 family transposase ISCro1 | Transposase |
| M1Y13_RS03915 (810473) | 810473..810820 | + | 348 | WP_073520663.1 | IS66 family transposase ISSfl3 | Transposase |
| M1Y13_RS03920 (810987) | 810987..812161 | + | 1175 | Protein_769 | IS66 family transposase ISSfl3 | Transposase |
| M1Y13_RS03925 (812234) | 812234..812377 | + | 144 | WP_263536090.1 | IS66 family transposase ISCro1 | Transposase |
| M1Y13_RS03930 (812411) | 812411..813865 | + | 1455 | Protein_771 | IS66 family transposase ISEc23 | Transposase |
| M1Y13_RS03935 (814098) | 814098..814748 | + | 651 | WP_000993931.1 | IS66 family transposase IS679 | Transposase |
| M1Y13_RS03940 (814748) | 814748..815095 | + | 348 | WP_021563311.1 | IS66 family transposase ISCro1 | Transposase |
| M1Y13_RS03945 (815115) | 815115..816686 | + | 1572 | WP_129541999.1 | IS66 family transposase IS679 | Transposase |
| M1Y13_RS03950 (816718) | 816718..816972 | - | 255 | Protein_775 | ATP-binding protein | - |
| M1Y13_RS03955 (817609) | 817609..818217 | - | 609 | WP_129541998.1 | hypothetical protein | - |
| M1Y13_RS03960 (818305) | 818305..818511 | - | 207 | WP_000235219.1 | AlpA family phage regulatory protein | - |
| M1Y13_RS03965 (819242) | 819242..819667 | + | 426 | WP_000422741.1 | IS66 family transposase ISEc23 | Transposase |
| M1Y13_RS03970 (819664) | 819664..820014 | + | 351 | WP_000624722.1 | IS66 family transposase ISEc23 | Transposase |
| M1Y13_RS03975 (820045) | 820045..821658 | + | 1614 | WP_000080195.1 | IS66 family transposase ISEc23 | Transposase |
| M1Y13_RS03980 (821763) | 821763..821921 | + | 159 | WP_242386907.1 | Hha/YmoA family nucleoid-associated regulatory protein | - |
| M1Y13_RS03985 (822262) | 822262..822459 | - | 198 | WP_129541995.1 | hypothetical protein | - |
| M1Y13_RS03990 (822659) | 822659..823228 | + | 570 | WP_129541994.1 | inovirus Gp2 family protein | - |
| M1Y13_RS03995 (823487) | 823487..823870 | + | 384 | WP_129541993.1 | putative zinc ribbon protein | - |
| M1Y13_RS04005 (825305) | 825305..825541 | + | 237 | Protein_786 | putative zinc ribbon protein | - |
| M1Y13_RS04010 (825547) | 825547..825726 | + | 180 | WP_073519842.1 | hypothetical protein | - |
| M1Y13_RS04015 (825847) | 825847..826470 | + | 624 | WP_053264742.1 | hypothetical protein | - |
| M1Y13_RS04020 (826566) | 826566..826799 | + | 234 | WP_053264776.1 | hypothetical protein | - |
| M1Y13_RS04025 (826852) | 826852..827058 | - | 207 | WP_049590175.1 | DUF4222 domain-containing protein | - |
| M1Y13_RS04030 (827698) | 827698..828237 | + | 540 | Protein_791 | POTRA domain-containing protein | - |
| M1Y13_RS04035 (828271) | 828271..829350 | + | 1080 | WP_223716279.1 | ShlB/FhaC/HecB family hemolysin secretion/activation protein | - |
| M1Y13_RS04040 (829360) | 829360..829887 | + | 528 | WP_053264743.1 | hypothetical protein | VF |
| M1Y13_RS04045 (829954) | 829954..830841 | + | 888 | Protein_794 | hypothetical protein | VF |
| M1Y13_RS04050 (831211) | 831211..831576 | + | 366 | Protein_795 | hypothetical protein | VF |
| M1Y13_RS04055 (832036) | 832036..839103 | + | 7068 | WP_242386723.1 | hypothetical protein | VF |
| M1Y13_RS04060 (839106) | 839106..839495 | + | 390 | WP_064769067.1 | hypothetical protein | - |
| M1Y13_RS04065 (839754) | 839754..840263 | + | 510 | WP_073520656.1 | polymorphic toxin type 25 domain-containing protein | - |
| M1Y13_RS04070 (840268) | 840268..840723 | + | 456 | WP_073520655.1 | hypothetical protein | - |
| M1Y13_RS04075 (841197) | 841197..841382 | + | 186 | WP_071531845.1 | CPCC family cysteine-rich protein | - |
| M1Y13_RS04080 (841412) | 841412..841798 | + | 387 | WP_242386718.1 | hypothetical protein | - |
| M1Y13_RS04085 (841803) | 841803..842876 | + | 1074 | WP_164997242.1 | hypothetical protein | VF |
| M1Y13_RS04090 (842876) | 842876..843211 | + | 336 | WP_097294904.1 | hypothetical protein | - |
| M1Y13_RS04095 (843850) | 843850..844086 | + | 237 | WP_073520653.1 | hypothetical protein | - |
| M1Y13_RS04100 (844193) | 844193..844732 | + | 540 | WP_073520652.1 | hypothetical protein | - |
| M1Y13_RS04105 (844729) | 844729..845088 | + | 360 | WP_073520651.1 | DUF596 domain-containing protein | - |
| M1Y13_RS04110 (845419) | 845419..845820 | + | 402 | WP_073520649.1 | hypothetical protein | - |
| M1Y13_RS04115 (845976) | 845976..847220 | + | 1245 | WP_073520648.1 | GIY-YIG nuclease family protein | - |
| M1Y13_RS04120 (847456) | 847456..849201 | + | 1746 | WP_129542103.1 | NERD domain-containing protein/DEAD/DEAH box helicase | - |
| M1Y13_RS04125 (849267) | 849267..849572 | + | 306 | WP_001604127.1 | hypothetical protein | - |
| M1Y13_RS04130 (849627) | 849627..849893 | + | 267 | Protein_811 | type VI secretion system ImpA family N-terminal domain-containing protein | - |
| M1Y13_RS04135 (850266) | 850266..850412 | + | 147 | Protein_812 | hypothetical protein | - |
| M1Y13_RS04140 (850464) | 850464..851015 | + | 552 | WP_242386724.1 | VasL domain-containing protein | - |
| M1Y13_RS04145 (851866) | 851866..852324 | + | 459 | WP_242386719.1 | AAA family ATPase | - |
| M1Y13_RS04150 (852445) | 852445..852927 | + | 483 | WP_242386720.1 | hypothetical protein | - |
| M1Y13_RS04155 (853127) | 853127..853771 | + | 645 | WP_073520645.1 | hypothetical protein | - |
| M1Y13_RS04160 (853912) | 853912..854379 | + | 468 | Protein_817 | phosphoadenosine phosphosulfate reductase | - |
| M1Y13_RS04165 (854580) | 854580..854729 | + | 150 | WP_157916178.1 | hypothetical protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|