MGE detailed information
MGE type: Prophage MGE length: 62942 bp
Accession: NZ_CP096532 Location: 907158..970099 Organism: Staphylococcus aureus strain RIVM_M083782 Replicon: chromosome
Accession: NZ_CP096532 Location: 907158..970099 Organism: Staphylococcus aureus strain RIVM_M083782 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| M1F48_RS04400 (M1F48_04385) | 902652..902885 | + | 234 | WP_000556760.1 | preprotein translocase subunit SecG | - |
| M1F48_RS04405 (M1F48_04390) | 903014..903754 | + | 741 | WP_001165970.1 | carboxylesterase | - |
| M1F48_RS04410 (M1F48_04395) | 903788..906160 | + | 2373 | WP_001050055.1 | ribonuclease R | - |
| M1F48_RS04415 (M1F48_04400) | 906182..906646 | + | 465 | WP_001085185.1 | SsrA-binding protein SmpB | - |
| M1F48_RS04425 (M1F48_04410) | 907158..908207 | - | 1050 | WP_021285879.1 | Tyrosine recombinase XerD ; Integrase | Integrase |
| M1F48_RS04430 (M1F48_04415) | 908269..908784 | - | 516 | WP_021285878.1 | hypothetical protein | - |
| M1F48_RS04435 (M1F48_04420) | 908788..909279 | - | 492 | WP_001573838.1 | hypothetical protein | - |
| M1F48_RS04440 (M1F48_04425) | 909300..909758 | - | 459 | WP_000521395.1 | hypothetical protein | - |
| M1F48_RS04445 (M1F48_04430) | 909780..910106 | - | 327 | WP_000455972.1 | helix-turn-helix transcriptional regulator | - |
| M1F48_RS04450 (M1F48_04435) | 910269..910478 | + | 210 | WP_001114715.1 | helix-turn-helix transcriptional regulator | - |
| M1F48_RS04455 (M1F48_04440) | 910517..911242 | + | 726 | WP_015978381.1 | phage repressor protein | - |
| M1F48_RS04460 (M1F48_04445) | 911267..911476 | + | 210 | WP_000455728.1 | hypothetical protein | - |
| M1F48_RS04465 (M1F48_04450) | 911489..911650 | + | 162 | WP_000066011.1 | DUF1270 domain-containing protein | - |
| M1F48_RS04470 (M1F48_04455) | 911742..912002 | + | 261 | WP_000291075.1 | hypothetical protein ; Integrase | Integrase |
| M1F48_RS04475 (M1F48_04460) | 912010..912246 | + | 237 | WP_000802315.1 | hypothetical protein | - |
| M1F48_RS04480 (M1F48_04465) | 912239..912718 | + | 480 | WP_000002513.1 | siphovirus Gp157 family protein | - |
| M1F48_RS04485 (M1F48_04470) | 912718..913356 | + | 639 | WP_021285877.1 | ERF family protein | - |
| M1F48_RS04490 (M1F48_04475) | 913356..913784 | + | 429 | WP_000934783.1 | single-stranded DNA-binding protein | - |
| M1F48_RS04495 (M1F48_04480) | 913798..914472 | + | 675 | WP_021285876.1 | putative HNHc nuclease | - |
| M1F48_RS04500 (M1F48_04485) | 914465..915220 | + | 756 | WP_001037657.1 | DnaD domain protein | - |
| M1F48_RS04505 (M1F48_04490) | 915220..915576 | + | 357 | WP_001132243.1 | hypothetical protein | - |
| M1F48_RS04510 (M1F48_04495) | 915573..916814 | + | 1242 | WP_001106166.1 | DnaB helicase C-terminal domain-containing protein | - |
| M1F48_RS04515 (M1F48_04500) | 916811..917026 | + | 216 | WP_021285875.1 | hypothetical protein | - |
| M1F48_RS04520 (M1F48_04505) | 917029..917250 | + | 222 | WP_001123688.1 | DUF3269 family protein | - |
| M1F48_RS04525 (M1F48_04510) | 917260..917667 | + | 408 | WP_021285874.1 | RusA family crossover junction endodeoxyribonuclease | - |
| M1F48_RS04530 (M1F48_04515) | 917667..917852 | + | 186 | WP_021285873.1 | DUF3113 family protein | - |
| M1F48_RS04535 (M1F48_04520) | 917853..918470 | + | 618 | WP_021285872.1 | SA1788 family PVL leukocidin-associated protein | - |
| M1F48_RS04540 (M1F48_04525) | 918470..918724 | + | 255 | WP_021285871.1 | DUF3310 domain-containing protein | - |
| M1F48_RS04545 (M1F48_04530) | 918724..918972 | + | 249 | WP_078069534.1 | SAV1978 family virulence-associated passenger protein | - |
| M1F48_RS04550 (M1F48_04535) | 918987..919193 | + | 207 | WP_000693993.1 | hypothetical protein | - |
| M1F48_RS04555 (M1F48_04540) | 919196..919603 | + | 408 | WP_000695771.1 | hypothetical protein | - |
| M1F48_RS04560 (M1F48_04545) | 919600..919794 | + | 195 | WP_031794818.1 | hypothetical protein | - |
| M1F48_RS04565 (M1F48_04550) | 919791..920228 | + | 438 | WP_031796778.1 | YopX family protein | - |
| M1F48_RS04570 (M1F48_04555) | 920225..920590 | + | 366 | WP_031796779.1 | hypothetical protein | - |
| M1F48_RS04575 (M1F48_04560) | 920583..920831 | + | 249 | WP_031795590.1 | DUF1024 family protein | - |
| M1F48_RS04580 (M1F48_04565) | 920824..921360 | + | 537 | WP_000185680.1 | dUTPase | - |
| M1F48_RS04585 (M1F48_04570) | 921397..921603 | + | 207 | WP_021285914.1 | DUF1381 domain-containing protein | - |
| M1F48_RS04590 (M1F48_04575) | 921600..921803 | + | 204 | WP_000141180.1 | hypothetical protein | - |
| M1F48_RS04595 (M1F48_04580) | 921796..922032 | + | 237 | WP_000608281.1 | hypothetical protein | - |
| M1F48_RS04600 (M1F48_04585) | 922022..922411 | + | 390 | WP_169538641.1 | hypothetical protein | - |
| M1F48_RS04605 (M1F48_04590) | 922408..922581 | + | 174 | WP_000595258.1 | transcriptional activator RinB | - |
| M1F48_RS04610 (M1F48_04595) | 922582..922983 | + | 402 | WP_000286968.1 | hypothetical protein | - |
| M1F48_RS04615 (M1F48_04600) | 923331..923711 | + | 381 | WP_031838201.1 | DNA-binding protein | - |
| M1F48_RS04620 (M1F48_04605) | 923695..924960 | + | 1266 | WP_031838202.1 | PBSX family phage terminase large subunit | - |
| M1F48_RS04625 (M1F48_04610) | 924979..926385 | + | 1407 | WP_031886702.1 | phage portal protein | - |
| M1F48_RS04630 (M1F48_04615) | 926324..927304 | + | 981 | WP_049949321.1 | phage head morphogenesis protein | - |
| M1F48_RS04635 (M1F48_04620) | 927402..927998 | + | 597 | WP_015967248.1 | phage scaffolding protein | - |
| M1F48_RS04640 (M1F48_04625) | 928019..928843 | + | 825 | WP_031838205.1 | N4-gp56 family major capsid protein | - |
| M1F48_RS04645 (M1F48_04630) | 928860..929186 | + | 327 | WP_031838206.1 | Rho termination factor N-terminal domain-containing protein | - |
| M1F48_RS04650 (M1F48_04635) | 929186..929500 | + | 315 | WP_031838207.1 | phage head-tail connector protein | - |
| M1F48_RS04655 (M1F48_04640) | 929493..929828 | + | 336 | WP_031838208.1 | phage head closure protein | - |
| M1F48_RS04660 (M1F48_04645) | 929815..930228 | + | 414 | WP_031838209.1 | HK97 gp10 family phage protein | - |
| M1F48_RS04665 (M1F48_04650) | 930241..930678 | + | 438 | WP_031838210.1 | DUF3168 domain-containing protein | - |
| M1F48_RS04670 (M1F48_04655) | 930665..931225 | + | 561 | WP_000046067.1 | hypothetical protein | - |
| M1F48_RS04675 (M1F48_04660) | 931287..931781 | + | 495 | WP_000141084.1 | tail assembly chaperone | - |
| M1F48_RS04680 (M1F48_04665) | 931802..932143 | + | 342 | WP_049949322.1 | hypothetical protein | - |
| M1F48_RS04685 (M1F48_04670) | 932146..935115 | + | 2970 | WP_031886701.1 | terminase | - |
| M1F48_RS04690 (M1F48_04675) | 935130..936065 | + | 936 | WP_031838213.1 | phage tail family protein | - |
| M1F48_RS04695 (M1F48_04680) | 936076..937962 | + | 1887 | WP_031903449.1 | SGNH/GDSL hydrolase family protein | - |
| M1F48_RS04700 (M1F48_04685) | 937975..939873 | + | 1899 | WP_031838215.1 | hypothetical protein | - |
| M1F48_RS04705 (M1F48_04690) | 939873..941696 | + | 1824 | WP_031838216.1 | BppU family phage baseplate upper protein | - |
| M1F48_RS04710 (M1F48_04695) | 941696..942073 | + | 378 | WP_031838217.1 | DUF2977 domain-containing protein | - |
| M1F48_RS04715 (M1F48_04700) | 942077..942250 | + | 174 | WP_078098837.1 | XkdX family protein | - |
| M1F48_RS04720 (M1F48_04705) | 942289..942723 | + | 435 | WP_031903468.1 | hypothetical protein | - |
| M1F48_RS04725 (M1F48_04710) | 942707..943102 | + | 396 | WP_031838220.1 | hypothetical protein | - |
| M1F48_RS04730 (M1F48_04715) | 943155..945029 | + | 1875 | WP_031886698.1 | glucosaminidase domain-containing protein | - |
| M1F48_RS04735 (M1F48_04720) | 945042..945620 | + | 579 | Protein_922 | phage baseplate upper protein | - |
| M1F48_RS04740 (M1F48_04725) | 946917..947636 | + | 720 | WP_223877258.1 | SGNH/GDSL hydrolase family protein | - |
| M1F48_RS04745 (M1F48_04730) | 947692..948129 | + | 438 | WP_021285832.1 | phage holin | - |
| M1F48_RS04750 (M1F48_04735) | 948110..949555 | + | 1446 | WP_021285831.1 | SH3 domain-containing protein | - |
| M1F48_RS04755 (M1F48_04740) | 950160..950354 | + | 195 | WP_021285829.1 | hypothetical protein | - |
| M1F48_RS04760 (M1F48_04745) | 950369..950569 | + | 201 | WP_021285828.1 | hypothetical protein | - |
| M1F48_RS04765 (M1F48_04750) | 951106..951651 | + | 546 | WP_000280154.1 | hypothetical protein | - |
| M1F48_RS04770 (M1F48_04755) | 952082..952810 | - | 729 | WP_000757403.1 | DUF5067 domain-containing protein | - |
| M1F48_RS04775 (M1F48_04760) | 953256..953411 | + | 156 | WP_014937001.1 | hypothetical protein | - |
| M1F48_RS04780 (M1F48_04765) | 953419..953940 | + | 522 | WP_000608190.1 | hypothetical protein | - |
| M1F48_RS04785 (M1F48_04770) | 954079..954609 | + | 531 | WP_001167164.1 | N-acetyltransferase | - |
| M1F48_RS04790 (M1F48_04775) | 954873..957704 | + | 2832 | WP_021285826.1 | Clumping factor A | VF |
| M1F48_RS04795 (M1F48_04780) | 957925..959439 | + | 1515 | WP_000791720.1 | Staphylocoagulase | VF |
| M1F48_RS04800 (M1F48_04785) | 959790..960716 | + | 927 | WP_000728063.1 | extracellular matrix protein-binding adhesin Emp | - |
| M1F48_RS04805 (M1F48_04790) | 961050..961532 | + | 483 | WP_000824489.1 | hypothetical protein | VF |
| M1F48_RS04810 (M1F48_04795) | 961873..962559 | + | 687 | WP_001574556.1 | thermonuclease family protein | - |
| M1F48_RS04815 (M1F48_04800) | 962916..963116 | + | 201 | WP_001059082.1 | cold-shock protein | - |
| M1F48_RS04820 (M1F48_04805) | 963613..963831 | - | 219 | WP_000005881.1 | hypothetical protein | - |
| M1F48_RS04825 (M1F48_04810) | 963892..964176 | - | 285 | WP_001004403.1 | hypothetical protein | - |
| M1F48_RS04830 (M1F48_04815) | 964264..964833 | - | 570 | WP_001106655.1 | lipoprotein N-acylation protein LnsA | - |
| M1F48_RS04835 (M1F48_04820) | 965021..965209 | - | 189 | WP_000052076.1 | hypothetical protein | Toxin Detail |
| M1F48_RS04840 (M1F48_04825) | 965237..965497 | - | 261 | WP_001059690.1 | hypothetical protein | Antitoxin Detail |
| M1F48_RS04845 (M1F48_04830) | 965839..966042 | + | 204 | WP_000145163.1 | sterile alpha motif-like domain-containing protein | - |
| M1F48_RS04850 (M1F48_04835) | 966039..966275 | - | 237 | WP_000368687.1 | hypothetical protein | - |
| M1F48_RS04855 (M1F48_04840) | 966500..967081 | + | 582 | WP_001140696.1 | histidine phosphatase family protein | - |
| M1F48_RS04860 (M1F48_04845) | 967154..967771 | - | 618 | WP_000255562.1 | LysE/ArgO family amino acid transporter | - |
| M1F48_RS04865 (M1F48_04850) | 967920..968414 | - | 495 | WP_000569881.1 | GNAT family N-acetyltransferase | - |
| M1F48_RS04870 (M1F48_04855) | 968813..969235 | - | 423 | WP_000974452.1 | organic hydroperoxide resistance protein | - |
| M1F48_RS04875 (M1F48_04860) | 969383..970099 | + | 717 | WP_000150026.1 | type I 3-dehydroquinate dehydratase | - |
| M1F48_RS04880 (M1F48_04865) | 970182..970721 | + | 540 | WP_000422911.1 | nitroreductase | - |
| M1F48_RS04885 (M1F48_04870) | 970871..971191 | - | 321 | WP_001147955.1 | thioredoxin family protein | - |
| M1F48_RS04890 (M1F48_04875) | 971335..971691 | + | 357 | WP_000589549.1 | arsenate reductase family protein | - |
| M1F48_RS04895 (M1F48_04880) | 971849..972229 | + | 381 | WP_000290492.1 | glycine cleavage system protein GcvH | - |
| M1F48_RS04900 (M1F48_04885) | 972409..973287 | + | 879 | WP_000932205.1 | YwqG family protein | - |
| M1F48_RS04905 (M1F48_04890) | 973989..974375 | + | 387 | WP_001018957.1 | toprim domain-containing protein | - |
| M1F48_RS04910 (M1F48_04895) | 974368..974664 | + | 297 | WP_001065802.1 | thioredoxin family protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|