MGE detailed information
MGE type: Prophage MGE length: 49141 bp
Accession: NZ_CP096522 Location: 358050..407190 Organism: Staphylococcus aureus strain RIVM_M085090 Replicon: chromosome
Accession: NZ_CP096522 Location: 358050..407190 Organism: Staphylococcus aureus strain RIVM_M085090 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| M1F52_RS01575 (M1F52_01565) | 353362..354894 | - | 1533 | WP_000665744.1 | sodium:solute symporter | - |
| M1F52_RS01580 (M1F52_01570) | 354934..355815 | - | 882 | WP_001030735.1 | N-acetylneuraminate lyase | - |
| M1F52_RS01585 (M1F52_01575) | 355973..356833 | + | 861 | WP_000291432.1 | ROK family protein | - |
| M1F52_RS01590 (M1F52_01580) | 357110..357910 | - | 801 | WP_000667388.1 | MurR/RpiR family transcriptional regulator | - |
| M1F52_RS01595 (M1F52_01585) | 358050..358718 | + | 669 | WP_000936721.1 | N-acetylmannosamine-6-phosphate 2-epimerase | - |
| M1F52_RS01600 (M1F52_01590) | 358848..360161 | - | 1314 | WP_001077706.1 | YjiH family protein | - |
| M1F52_RS01605 (M1F52_01595) | 360578..362512 | + | 1935 | Protein_318 | hypothetical protein | VF |
| M1F52_RS01610 (M1F52_01600) | 362606..363811 | - | 1206 | WP_031920108.1 | Tyrosine recombinase XerC ; Integrase | Integrase |
| M1F52_RS01615 (M1F52_01605) | 363937..364551 | + | 615 | WP_000191466.1 | hypothetical protein | - |
| M1F52_RS01620 (M1F52_01610) | 364548..364694 | - | 147 | WP_074370993.1 | hypothetical protein | - |
| M1F52_RS01625 (M1F52_01615) | 364924..365508 | - | 585 | WP_031918390.1 | hypothetical protein | - |
| M1F52_RS01630 (M1F52_01620) | 365526..365987 | - | 462 | WP_000525004.1 | hypothetical protein | Toxin Detail |
| M1F52_RS01635 (M1F52_01625) | 366000..366314 | - | 315 | WP_000333630.1 | helix-turn-helix transcriptional regulator | Antitoxin Detail |
| M1F52_RS01640 (M1F52_01630) | 366466..366702 | + | 237 | WP_001121027.1 | helix-turn-helix transcriptional regulator | - |
| M1F52_RS01645 (M1F52_01635) | 366716..367492 | + | 777 | WP_001148544.1 | Rha family transcriptional regulator | - |
| M1F52_RS01650 (M1F52_01640) | 367521..367664 | + | 144 | WP_000939498.1 | hypothetical protein | - |
| M1F52_RS01655 (M1F52_01645) | 367654..367863 | - | 210 | WP_000642492.1 | hypothetical protein | - |
| M1F52_RS01660 (M1F52_01650) | 367919..368068 | + | 150 | WP_000771849.1 | hypothetical protein | - |
| M1F52_RS01665 (M1F52_01655) | 368109..368321 | - | 213 | WP_000362644.1 | hypothetical protein | - |
| M1F52_RS01670 (M1F52_01660) | 368391..368588 | + | 198 | WP_001148860.1 | hypothetical protein | - |
| M1F52_RS01675 (M1F52_01665) | 368575..368955 | - | 381 | WP_000773059.1 | DUF2513 domain-containing protein | - |
| M1F52_RS01680 (M1F52_01670) | 369022..369267 | + | 246 | WP_001025401.1 | DUF2829 domain-containing protein | Toxin Detail |
| M1F52_RS01685 (M1F52_01675) | 369236..369601 | - | 366 | WP_001128432.1 | hypothetical protein | Antitoxin Detail |
| M1F52_RS01690 (M1F52_01680) | 369656..369871 | + | 216 | WP_001097552.1 | hypothetical protein | - |
| M1F52_RS01695 (M1F52_01685) | 369896..370159 | + | 264 | WP_001124160.1 | IS3 family transposase ISVa4 | Transposase |
| M1F52_RS01700 (M1F52_01690) | 370172..370333 | + | 162 | WP_001285954.1 | DUF1270 domain-containing protein | - |
| M1F52_RS01705 (M1F52_01695) | 370416..370739 | + | 324 | WP_031903993.1 | hypothetical protein | - |
| M1F52_RS01710 (M1F52_01700) | 370754..371116 | + | 363 | WP_031901863.1 | hypothetical protein | - |
| M1F52_RS01715 (M1F52_01705) | 371113..372279 | + | 1167 | WP_267408451.1 | DUF2800 domain-containing protein | - |
| M1F52_RS01720 (M1F52_01710) | 372306..372860 | + | 555 | WP_000647288.1 | DUF2815 family protein | - |
| M1F52_RS01725 (M1F52_01715) | 372929..374881 | + | 1953 | WP_267408575.1 | DNA polymerase | - |
| M1F52_RS01730 (M1F52_01720) | 374893..375048 | + | 156 | WP_000152769.1 | hypothetical protein | - |
| M1F52_RS01735 (M1F52_01725) | 375048..375233 | + | 186 | WP_001187263.1 | DUF3113 family protein | - |
| M1F52_RS01740 (M1F52_01730) | 375234..375593 | + | 360 | WP_000029380.1 | SA1788 family PVL leukocidin-associated protein | - |
| M1F52_RS01745 (M1F52_01735) | 375594..375842 | + | 249 | WP_111228572.1 | phi PVL orf 51-like protein | - |
| M1F52_RS01750 (M1F52_01740) | 375857..376063 | + | 207 | WP_024937271.1 | hypothetical protein | - |
| M1F52_RS01755 (M1F52_01745) | 376066..376473 | + | 408 | WP_267408466.1 | hypothetical protein | - |
| M1F52_RS01760 (M1F52_01750) | 376495..376629 | + | 135 | Protein_349 | dUTP pyrophosphatase | - |
| M1F52_RS01765 (M1F52_01755) | 376666..376860 | + | 195 | WP_000195798.1 | DUF1381 domain-containing protein | - |
| M1F52_RS01770 (M1F52_01760) | 376857..377060 | + | 204 | WP_031911912.1 | hypothetical protein | - |
| M1F52_RS01775 (M1F52_01765) | 377053..377289 | + | 237 | WP_000608281.1 | hypothetical protein | - |
| M1F52_RS01780 (M1F52_01770) | 377279..377668 | + | 390 | WP_001596346.1 | hypothetical protein | - |
| M1F52_RS01785 (M1F52_01775) | 377665..377817 | + | 153 | WP_000595213.1 | transcriptional activator RinB | - |
| M1F52_RS01790 (M1F52_01780) | 377885..378085 | + | 201 | WP_031794940.1 | DUF1514 family protein | - |
| M1F52_RS01795 (M1F52_01785) | 378137..380584 | + | 2448 | WP_267408473.1 | virulence-associated E family protein | - |
| M1F52_RS01800 (M1F52_01790) | 380687..380791 | - | 105 | WP_078099040.1 | hypothetical protein | - |
| M1F52_RS01805 (M1F52_01795) | 380925..381215 | + | 291 | WP_001794602.1 | VRR-NUC domain-containing protein | - |
| M1F52_RS01810 (M1F52_01800) | 381196..382563 | + | 1368 | WP_267408476.1 | DEAD/DEAH box helicase | - |
| M1F52_RS01815 (M1F52_01805) | 382576..383013 | + | 438 | WP_071938159.1 | transcriptional regulator | - |
| M1F52_RS01820 (M1F52_01810) | 383170..383484 | + | 315 | WP_000160689.1 | HNH endonuclease | - |
| M1F52_RS01825 (M1F52_01815) | 383606..383911 | + | 306 | WP_000778933.1 | P27 family phage terminase small subunit | - |
| M1F52_RS01830 (M1F52_01820) | 383901..385592 | + | 1692 | WP_000153540.1 | terminase large subunit | - |
| M1F52_RS01835 (M1F52_01825) | 385597..386835 | + | 1239 | WP_031919077.1 | phage portal protein | - |
| M1F52_RS01840 (M1F52_01830) | 386819..387592 | + | 774 | WP_031886567.1 | Clp protease ClpP | - |
| M1F52_RS01845 (M1F52_01835) | 387604..388767 | + | 1164 | WP_001142739.1 | phage major capsid protein | - |
| M1F52_RS01850 (M1F52_01840) | 388836..389114 | + | 279 | WP_000050973.1 | head-tail connector protein | - |
| M1F52_RS01855 (M1F52_01845) | 389126..389458 | + | 333 | WP_000395501.1 | hypothetical protein | - |
| M1F52_RS01860 (M1F52_01850) | 389455..389856 | + | 402 | WP_031776127.1 | hypothetical protein | - |
| M1F52_RS01865 (M1F52_01855) | 389857..390252 | + | 396 | WP_015978094.1 | DUF3168 domain-containing protein | - |
| M1F52_RS01870 (M1F52_01860) | 390287..390928 | + | 642 | WP_000807536.1 | phage tail protein | - |
| M1F52_RS01875 (M1F52_01865) | 391020..391475 | + | 456 | WP_000169127.1 | Ig-like domain-containing protein | - |
| M1F52_RS01880 (M1F52_01870) | 391533..391883 | + | 351 | WP_000589167.1 | hypothetical protein | - |
| M1F52_RS01885 (M1F52_01875) | 391925..392083 | + | 159 | WP_000438833.1 | hypothetical protein | - |
| M1F52_RS01890 (M1F52_01880) | 392097..398297 | + | 6201 | WP_267408499.1 | phage tail tape measure protein | - |
| M1F52_RS01895 (M1F52_01885) | 398297..399121 | + | 825 | WP_001190533.1 | phage tail family protein | - |
| M1F52_RS01900 (M1F52_01890) | 399130..400713 | + | 1584 | WP_000384464.1 | prophage endopeptidase tail family protein | - |
| M1F52_RS01905 (M1F52_01895) | 400713..401003 | + | 291 | WP_000179860.1 | hypothetical protein | - |
| M1F52_RS01910 (M1F52_01900) | 401019..402929 | + | 1911 | WP_000429551.1 | minor structural protein | - |
| M1F52_RS01915 (M1F52_01905) | 402929..404395 | + | 1467 | WP_021285990.1 | BppU family phage baseplate upper protein | - |
| M1F52_RS01920 (M1F52_01910) | 404395..404784 | + | 390 | WP_001166599.1 | DUF2977 domain-containing protein | - |
| M1F52_RS01925 (M1F52_01915) | 404777..404941 | + | 165 | WP_000916020.1 | XkdX family protein | - |
| M1F52_RS01930 (M1F52_01920) | 404987..405286 | + | 300 | WP_000466784.1 | DUF2951 domain-containing protein | - |
| M1F52_RS01935 (M1F52_01925) | 405422..405724 | + | 303 | WP_000339146.1 | phage holin | - |
| M1F52_RS01940 (M1F52_01930) | 405736..407190 | + | 1455 | WP_021285991.1 | N-acetylmuramoyl-L-alanine amidase | - |
| M1F52_RS01945 | 407960..408082 | + | 123 | WP_000346419.1 | hypothetical protein | - |
| M1F52_RS01950 (M1F52_01935) | 408324..409151 | - | 828 | WP_000136026.1 | alpha/beta hydrolase | - |
| M1F52_RS01955 (M1F52_01940) | 409209..410423 | - | 1215 | WP_000286472.1 | NADH-dependent flavin oxidoreductase | - |
| M1F52_RS01960 (M1F52_01945) | 410519..410611 | + | 93 | WP_014936975.1 | hypothetical protein | - |
| M1F52_RS01965 (M1F52_01950) | 410725..411726 | + | 1002 | WP_000240067.1 | LLM class flavin-dependent oxidoreductase | - |
| M1F52_RS01970 (M1F52_01955) | 411760..412092 | + | 333 | WP_000731878.1 | glycine cleavage system protein H | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|