MGE detailed information
MGE type: Genomic_island MGE length: 22042 bp
Accession: NZ_CP095505 Location: 3850587..3872628 Organism: Escherichia coli strain GN02050 Replicon: chromosome
Accession: NZ_CP095505 Location: 3850587..3872628 Organism: Escherichia coli strain GN02050 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| MW398_RS19745 (3846706) | 3846706..3847131 | - | 426 | WP_000946069.1 | type VI secretion system baseplate subunit TssE | - |
| MW398_RS19750 (3847136) | 3847136..3848620 | - | 1485 | WP_000111582.1 | type VI secretion system contractile sheath large subunit | - |
| MW398_RS19755 (3848643) | 3848643..3849146 | - | 504 | WP_000041480.1 | type VI secretion system contractile sheath small subunit | - |
| MW398_RS19760 (3849848) | 3849848..3850366 | + | 519 | WP_001142963.1 | Hcp family type VI secretion system effector | - |
| MW398_RS19765 (3850587) | 3850587..3852569 | + | 1983 | WP_021537848.1 | hypothetical protein | VF |
| MW398_RS19770 (3852676) | 3852676..3853722 | + | 1047 | WP_000571853.1 | DUF2169 domain-containing protein | - |
| MW398_RS19775 (3853994) | 3853994..3855156 | + | 1163 | WP_097730840.1 | IS3 family transposase ISEc17 | Transposase |
| MW398_RS19780 (3855174) | 3855174..3855938 | + | 765 | WP_234247938.1 | DUF4150 domain-containing protein | - |
| MW398_RS19785 (3856080) | 3856080..3856415 | + | 336 | WP_021523752.1 | cysteine peptidase family C39 domain-containing protein | - |
| MW398_RS19790 (3856390) | 3856390..3856680 | + | 291 | WP_000513317.1 | hypothetical protein | - |
| MW398_RS19795 (3856938) | 3856938..3857702 | + | 765 | Protein_3683 | ISAs1 family transposase ISEc1 | Transposase |
| MW398_RS19800 (3857931) | 3857931..3858434 | + | 504 | WP_000227712.1 | hypothetical protein | - |
| MW398_RS19805 (3858528) | 3858528..3859016 | + | 489 | WP_001298174.1 | integrating conjugative element protein | - |
| MW398_RS19810 (3859042) | 3859042..3859236 | + | 195 | Protein_3686 | ISAs1 family transposase | - |
| MW398_RS19815 (3859288) | 3859288..3860058 | - | 771 | WP_021523754.1 | 2-oxoglutaramate amidase | - |
| MW398_RS19820 (3860239) | 3860239..3860685 | + | 447 | WP_001308392.1 | Ivy family C-type lysozyme inhibitor | - |
| MW398_RS19825 (3860728) | 3860728..3863172 | - | 2445 | WP_021523755.1 | hypothetical protein | VF |
| MW398_RS19830 (3863412) | 3863412..3863990 | + | 579 | WP_000284050.1 | Phosphoheptose isomerase | VF |
| MW398_RS19835 (3864195) | 3864195..3864962 | + | 768 | WP_000333380.1 | class II glutamine amidotransferase | - |
| MW398_RS19840 (3864933) | 3864933..3865673 | - | 741 | WP_001225679.1 | peptidoglycan meso-diaminopimelic acid protein amidase | - |
| MW398_RS19845 (3865985) | 3865985..3866734 | + | 750 | WP_000093934.1 | hypothetical protein | VF |
| MW398_RS19850 (3866910) | 3866910..3867407 | + | 498 | WP_000006241.1 | REP-associated tyrosine transposase RayT | - |
| MW398_RS19855 (3867402) | 3867402..3867746 | - | 345 | WP_125093574.1 | hypothetical protein | - |
| MW398_RS19860 (3867825) | 3867825..3869537 | - | 1713 | Protein_3696 | hypothetical protein | VF |
| MW398_RS19865 (3869509) | 3869509..3870294 | + | 786 | WP_061301231.1 | hypothetical protein | VF |
| MW398_RS19870 (3870365) | 3870365..3871420 | + | 1056 | WP_001226168.1 | DNA polymerase IV | - |
| MW398_RS19875 (3871472) | 3871472..3871765 | + | 294 | WP_000554758.1 | type I toxin-antitoxin system antitoxin YafN | Antitoxin Detail |
| MW398_RS19880 (3871768) | 3871768..3872166 | + | 399 | WP_001263500.1 | type II toxin-antitoxin system mRNA interferase toxin YafO | Toxin Detail |
| MW398_RS19885 (3872176) | 3872176..3872628 | + | 453 | WP_071778924.1 | GNAT family N-acetyltransferase | - |
| MW398_RS19890 (3872818) | 3872818..3873957 | + | 1140 | WP_000521561.1 | RNA ligase RtcB family protein | - |
| MW398_RS19895 (3873954) | 3873954..3874568 | + | 615 | WP_000602123.1 | peptide chain release factor H | - |
| MW398_RS19900 (3874625) | 3874625..3876082 | - | 1458 | WP_001292999.1 | cytosol nonspecific dipeptidase | - |
| MW398_RS19905 (3876343) | 3876343..3876801 | + | 459 | WP_001291991.1 | xanthine phosphoribosyltransferase | - |
| - (3877397) | 3877397..3877477 | + | 81 | NuclAT_4 | - | - |
| - (3877397) | 3877397..3877477 | + | 81 | NuclAT_4 | - | - |
| - (3877397) | 3877397..3877477 | + | 81 | NuclAT_4 | - | - |
| - (3877397) | 3877397..3877477 | + | 81 | NuclAT_4 | - | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|