MGE detailed information
MGE type: Genomic_island MGE length: 19762 bp
Accession: NZ_CP094987 Location: 4350340..4370101 Organism: Shigella flexneri strain 3160_NCHU22 Replicon: chromosome
Accession: NZ_CP094987 Location: 4350340..4370101 Organism: Shigella flexneri strain 3160_NCHU22 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| MT485_RS21960 (4346472) | 4346472..4347416 | + | 945 | WP_000947076.1 | nickel ABC transporter permease subunit NikB | - |
| MT485_RS21965 (4347413) | 4347413..4348246 | + | 834 | WP_001008973.1 | nickel ABC transporter permease subunit NikC | - |
| MT485_RS21970 (4348246) | 4348246..4349010 | + | 765 | WP_001136253.1 | nickel import ATP-binding protein NikD | - |
| MT485_RS21975 (4349007) | 4349007..4349813 | + | 807 | WP_000173660.1 | nickel import ATP-binding protein NikE | - |
| MT485_RS21980 (4349819) | 4349819..4350220 | + | 402 | WP_001190062.1 | nickel-responsive transcriptional regulator NikR | - |
| MT485_RS21985 (4350340) | 4350340..4350699 | - | 360 | WP_000593555.1 | type II toxin-antitoxin system HicB family antitoxin | Antitoxin Detail |
| MT485_RS21990 (4350696) | 4350696..4350971 | - | 276 | WP_001259384.1 | type II toxin-antitoxin system HicA family toxin | Toxin Detail |
| MT485_RS21995 (4351030) | 4351030..4352154 | - | 1125 | WP_001216257.1 | ABC transporter permease | - |
| MT485_RS22000 (4352154) | 4352154..4354889 | - | 2736 | WP_000149170.1 | Ribosome-associated ATPase | VF |
| MT485_RS22005 (4354886) | 4354886..4355953 | - | 1068 | WP_000361470.1 | HlyD family secretion protein | - |
| MT485_RS22010 (4356016) | 4356016..4356129 | - | 114 | WP_001296785.1 | protein YhiY | - |
| MT485_RS22015 (4356319) | 4356319..4357941 | - | 1623 | WP_005052620.1 | DUF4049 domain-containing protein | - |
| MT485_RS22020 (4358203) | 4358203..4359792 | - | 1590 | WP_000643692.1 | DUF4049 domain-containing protein | - |
| MT485_RS22025 (4360210) | 4360210..4361208 | + | 999 | Protein_4285 | DUF2776 family protein | - |
| MT485_RS22030 (4361295) | 4361295..4361771 | - | 477 | WP_000182502.1 | hypothetical protein | - |
| MT485_RS22035 (4361764) | 4361764..4362528 | - | 765 | WP_000442140.1 | winged helix-turn-helix domain-containing protein | - |
| MT485_RS22040 (4362774) | 4362774..4363535 | + | 762 | Protein_4288 | Transcriptional regulatory protein TdiR | VF |
| MT485_RS22045 (4363642) | 4363642..4364154 | - | 513 | WP_000751953.1 | hypothetical protein | - |
| MT485_RS22050 (4364293) | 4364293..4365441 | - | 1149 | WP_005052604.1 | F1 capsule-anchoring protein | VF |
| MT485_RS22055 (4365533) | 4365533..4366761 | + | 1229 | WP_094081542.1 | IS3 family transposase IS2 | Transposase |
| MT485_RS22060 (4367016) | 4367016..4368065 | - | 1050 | WP_005099994.1 | F1 capsule-anchoring protein | VF |
| MT485_RS22065 (4368139) | 4368139..4368900 | - | 762 | WP_005090407.1 | Chaperone protein caf1M | VF |
| MT485_RS22070 (4369367) | 4369367..4370101 | - | 735 | WP_000245840.1 | helix-turn-helix transcriptional regulator | - |
| MT485_RS22075 (4370101) | 4370101..4371255 | - | 1155 | WP_232111812.1 | O-antigen ligase family protein | - |
| MT485_RS22080 (4371391) | 4371391..4371683 | + | 293 | Protein_4296 | transposase | - |
| MT485_RS22090 (4372927) | 4372927..4374126 | - | 1200 | WP_000439213.1 | NAD(P)/FAD-dependent oxidoreductase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Shigella flexneri 5a str. M90T | Genomic island | TA120378 | NZ_CP037923 | 4222298..4243335 | 0.003 |