MGE detailed information
MGE type: Prophage MGE length: 70722 bp
Accession: NZ_CP094987 Location: 2795432..2866153 Organism: Shigella flexneri strain 3160_NCHU22 Replicon: chromosome
Accession: NZ_CP094987 Location: 2795432..2866153 Organism: Shigella flexneri strain 3160_NCHU22 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| MT485_RS14210 () | 2790856..2792550 | - | 1695 | Protein_2759 | cellulose biosynthesis regulator diguanylate cyclase DgcQ | - |
| MT485_RS14215 () | 2792721..2792903 | - | 183 | WP_000009302.1 | DUF2158 domain-containing protein | - |
| MT485_RS14220 () | 2792982..2793899 | - | 918 | WP_000922688.1 | DUF808 domain-containing protein | - |
| MT485_RS14225 () | 2794072..2794992 | + | 921 | WP_001212270.1 | drug/metabolite exporter YedA | - |
| MT485_RS14230 () | 2794981..2795451 | - | 471 | WP_000228688.1 | VSPR family DNA mismatch endonuclease | - |
| MT485_RS14235 () | 2795432..2796850 | - | 1419 | WP_001157215.1 | DNA-cytosine methyltransferase | - |
| MT485_RS14240 () | 2796917..2797418 | - | 502 | Protein_2765 | HD domain-containing protein | - |
| MT485_RS14245 () | 2797497..2797754 | - | 258 | WP_032155863.1 | cell division protein DrpB | - |
| MT485_RS14255 () | 2798968..2799732 | + | 765 | Protein_2768 | porin | - |
| MT485_RS14265 () | 2801063..2801242 | + | 180 | Protein_2770 | porin | - |
| MT485_RS14270 () | 2801870..2802567 | + | 698 | WP_225620329.1 | IS1 family transposase IS1X2 | Transposase |
| MT485_RS14275 () | 2802613..2803464 | + | 852 | WP_000218218.1 | protein deglycase HchA | - |
| MT485_RS14280 () | 2803572..2804930 | - | 1359 | WP_000826714.1 | two-component system sensor histidine kinase HprS | - |
| MT485_RS14285 () | 2804930..2805601 | - | 672 | WP_001347103.1 | putative transcriptional regulatory protein YedW | VF |
| MT485_RS14290 () | 2805734..2806147 | + | 414 | WP_000920127.1 | hydroxyisourate hydrolase | - |
| MT485_RS14295 () | 2806256..2807260 | + | 1005 | Protein_2776 | protein-methionine-sulfoxide reductase catalytic subunit MsrP | - |
| MT485_RS14300 () | 2807261..2807896 | + | 636 | WP_001240061.1 | protein-methionine-sulfoxide reductase heme-binding subunit MsrQ | - |
| MT485_RS14305 () | 2808154..2808804 | + | 651 | WP_001007781.1 | metal-binding protein ZinT | - |
| MT485_RS14310 () | 2809882..2810151 | - | 270 | WP_000937511.1 | tail fiber assembly protein | - |
| MT485_RS14315 () | 2810208..2810876 | + | 669 | WP_000239881.1 | class I SAM-dependent methyltransferase | - |
| MT485_RS14320 () | 2811192..2812835 | + | 1644 | WP_014532281.1 | E3 ubiquitin-protein ligase ipaH3 | VF |
| MT485_RS14325 () | 2813015..2813494 | - | 480 | Protein_2782 | DUF4376 domain-containing protein | - |
| MT485_RS14330 () | 2813535..2814392 | - | 858 | Protein_2783 | IS3 family transposase IS600 | Transposase |
| MT485_RS14335 () | 2814450..2815147 | + | 698 | WP_223368647.1 | IS1 family transposase IS1X2 | Transposase |
| MT485_RS14340 () | 2815240..2815722 | - | 483 | WP_000594909.1 | hypothetical protein | - |
| MT485_RS14345 () | 2815790..2817739 | - | 1950 | WP_000785377.1 | phage tail tape measure protein | - |
| MT485_RS14350 () | 2817824..2818159 | - | 336 | WP_001251340.1 | phage tail assembly protein | - |
| MT485_RS14355 () | 2818159..2818515 | - | 357 | WP_001062338.1 | phage tail tube protein | - |
| MT485_RS14360 () | 2818515..2820011 | - | 1497 | WP_000155743.1 | phage tail sheath subtilisin-like domain-containing protein | - |
| MT485_RS14365 () | 2820008..2820169 | - | 162 | WP_000497744.1 | DUF2635 domain-containing protein | - |
| MT485_RS14370 () | 2820179..2820538 | - | 360 | Protein_2791 | hypothetical protein | - |
| MT485_RS14375 () | 2820563..2821717 | - | 1155 | Protein_2792 | IS3 family transposase ISSd1 | Transposase |
| MT485_RS14380 () | 2821783..2822106 | - | 324 | Protein_2793 | IS66 family transposase ISSfl3 | Transposase |
| MT485_RS14385 () | 2822565..2822566 | - | 2 | WP_153933088.1 | IS1 family transposase | - |
| MT485_RS14390 () | 2822874..2823370 | - | 497 | Protein_2795 | IS66 family transposase ISSfl3 | Transposase |
| MT485_RS14395 () | 2823367..2823715 | - | 349 | Protein_2796 | IS66 family transposase ISSfl3 | Transposase |
| MT485_RS14400 () | 2823712..2824384 | - | 673 | Protein_2797 | IS66 family transposase ISSfl3 | Transposase |
| MT485_RS14405 () | 2824483..2824698 | - | 216 | WP_000839572.1 | class II holin family protein | - |
| MT485_RS14430 () | 2825493..2826181 | - | 689 | Protein_2799 | bacteriophage antitermination protein Q | - |
| MT485_RS14435 () | 2826178..2826543 | - | 366 | WP_000140020.1 | RusA family crossover junction endodeoxyribonuclease | - |
| MT485_RS14440 () | 2826544..2827602 | - | 1059 | WP_001265248.1 | DUF968 domain-containing protein | - |
| MT485_RS14445 () | 2827604..2827882 | - | 279 | WP_011069426.1 | hypothetical protein | - |
| MT485_RS14450 () | 2828050..2828205 | - | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | Toxin Detail |
| - | 2828217..2828275 | + | 59 | - | - | Antitoxin Detail |
| MT485_RS14455 () | 2828857..2829273 | - | 417 | WP_005069274.1 | hypothetical protein | - |
| MT485_RS14460 () | 2829300..2829440 | + | 141 | Protein_2805 | DUF4224 domain-containing protein | - |
| MT485_RS14465 () | 2829440..2830490 | + | 1051 | Protein_2806 | Tyrosine recombinase XerC ; Integrase | Integrase |
| MT485_RS14475 () | 2830701..2831498 | + | 798 | WP_001325918.1 | DgsA anti-repressor MtfA | - |
| MT485_RS14485 () | 2831836..2833098 | + | 1263 | Protein_2808 | Prophage integrase IntA ; Integrase | Integrase |
| MT485_RS14495 () | 2834429..2834935 | + | 507 | Protein_2810 | MFS transporter | - |
| MT485_RS14500 () | 2835000..2836199 | + | 1200 | Protein_2811 | IS3 family transposase IS600 | Transposase |
| MT485_RS14505 () | 2836200..2836406 | + | 207 | WP_000466572.1 | hypothetical protein | - |
| MT485_RS14510 () | 2836508..2837962 | + | 1455 | WP_001060217.1 | AMP nucleosidase | - |
| MT485_RS14515 () | 2838305..2839021 | + | 717 | WP_000532920.1 | putative transcriptional regulatory protein YeeN | VF |
| MT485_RS14525 () | 2839653..2841124 | - | 1472 | Protein_2815 | toxic metabolite efflux MATE transporter YeeO | - |
| MT485_RS14535 () | 2841398..2842069 | - | 672 | Protein_2816 | LysR substrate-binding domain-containing protein | - |
| MT485_RS14540 () | 2842085..2842782 | + | 698 | WP_242445271.1 | IS1 family transposase IS1X2 | Transposase |
| MT485_RS14545 () | 2842799..2843125 | - | 327 | Protein_2818 | LysR family transcriptional regulator | - |
| MT485_RS14550 () | 2843227..2844144 | - | 918 | WP_001011445.1 | nitrogen assimilation transcriptional regulator NAC | - |
| MT485_RS14560 () | 2844603..2845538 | - | 936 | WP_244758354.1 | L,D-transpeptidase | - |
| MT485_RS14565 () | 2845600..2846679 | - | 1080 | WP_001165576.1 | nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase | - |
| MT485_RS14570 () | 2846691..2847434 | - | 744 | WP_005049317.1 | adenosylcobinamide-GDP ribazoletransferase | - |
| MT485_RS14575 () | 2847431..2847940 | - | 510 | WP_000261572.1 | bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase | - |
| MT485_RS14585 () | 2849351..2850560 | + | 1210 | Protein_2825 | IS3 family transposase IS629 | Transposase |
| MT485_RS14590 () | 2850938..2851084 | - | 147 | Protein_2826 | transposase domain-containing protein | - |
| MT485_RS14595 () | 2851186..2851320 | + | 135 | WP_001297944.1 | EutP/PduV family microcompartment system protein | - |
| MT485_RS14600 () | 2851421..2851750 | - | 330 | WP_000450409.1 | DUF496 family protein | - |
| MT485_RS14605 () | 2851922..2852206 | - | 285 | Protein_2829 | hypothetical protein | - |
| MT485_RS14610 () | 2852291..2852965 | + | 675 | WP_004967157.1 | IS66 family transposase ISSfl3 | Transposase |
| MT485_RS14615 () | 2852962..2853132 | + | 171 | Protein_2831 | IS66 family transposase ISSfl3 | Transposase |
| MT485_RS14620 () | 2853177..2854386 | - | 1210 | Protein_2832 | IS3 family transposase IS629 | Transposase |
| MT485_RS14625 () | 2854442..2854621 | + | 180 | Protein_2833 | IS66 family insertion sequence element accessory protein TnpB | - |
| MT485_RS14630 () | 2854618..2856219 | + | 1602 | WP_244758355.1 | IS66 family transposase ISSfl3 | Transposase |
| MT485_RS14635 () | 2856253..2856639 | + | 387 | Protein_2835 | IS3 family transposase ISLad1 | Transposase |
| MT485_RS14640 () | 2856691..2857044 | - | 354 | Protein_2836 | hypothetical protein ; Integrase | Integrase |
| MT485_RS14645 () | 2857074..2857490 | - | 417 | Protein_2837 | IS66 family transposase ISSfl3 | Transposase |
| MT485_RS14655 () | 2858755..2859042 | - | 288 | Protein_2839 | transposase | - |
| MT485_RS14665 () | 2860373..2861278 | - | 906 | Protein_2841 | IS66 family transposase ISSfl3 | Transposase |
| MT485_RS14670 () | 2861275..2861625 | - | 351 | WP_005048975.1 | IS66 family transposase ISSfl3 | Transposase |
| MT485_RS14675 () | 2861622..2862296 | - | 675 | WP_004967157.1 | IS66 family transposase ISSfl3 | Transposase |
| MT485_RS14680 () | 2862378..2863214 | - | 837 | Protein_2844 | Prophage integrase IntA ; Integrase | Integrase |
| MT485_RS14685 () | 2863396..2864820 | + | 1425 | WP_000132548.1 | exodeoxyribonuclease I | - |
| MT485_RS14690 () | 2864863..2865090 | - | 228 | WP_000985273.1 | thiosulfate utilization sulfurtransferase TsuB/YeeD | - |
| MT485_RS14695 () | 2865104..2866162 | - | 1059 | WP_000492293.1 | thiosulfate utilization transporter TsuA/YeeE | - |
| MT485_RS14700 () | 2866341..2867699 | - | 1359 | WP_000019203.1 | putrescine/proton symporter PlaP | - |
| MT485_RS14705 () | 2867689..2867751 | - | 63 | WP_097433929.1 | membrane protein YoeI | - |
| MT485_RS14710 () | 2867912..2868895 | - | 984 | WP_000803326.1 | LysR substrate-binding domain-containing protein | - |
| MT485_RS14715 () | 2868941..2869765 | - | 825 | WP_000754740.1 | SDR family oxidoreductase | - |
| MT485_RS14720 () | 2869848..2870102 | - | 255 | WP_000767829.1 | type II toxin-antitoxin system mRNA interferase toxin YoeB | - |
| MT485_RS14730 () | 2870855..2871127 | - | 273 | WP_001259256.1 | YoeB-YefM toxin-antitoxin system antitoxin YefM | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|