MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 90124 bp
Accession: NZ_CP094343 Location: 5400554..5490677 Organism: Pseudomonas sp. M1 Replicon: chromosome
Accession: NZ_CP094343 Location: 5400554..5490677 Organism: Pseudomonas sp. M1 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PM1_RS23765 (MRY70_23765) | 5395860..5396747 | + | 888 | WP_009618230.1 | TIGR03749 family integrating conjugative element protein | - |
| PM1_RS23770 (MRY70_23770) | 5396737..5397888 | + | 1152 | Protein_4693 | TIGR03752 family integrating conjugative element protein | - |
| PM1_RS23775 (MRY70_23775) | 5398385..5398543 | - | 159 | WP_009618228.1 | hypothetical protein | - |
| PM1_RS23780 (MRY70_23780) | 5398553..5399278 | - | 726 | WP_009618227.1 | zeta toxin family protein | - |
| PM1_RS23785 (MRY70_23785) | 5399382..5399544 | + | 163 | Protein_4696 | Presumed portal vertex protein | - |
| PM1_RS23790 (MRY70_23790) | 5400782..5401636 | - | 855 | WP_009618225.1 | hypothetical protein | - |
| PM1_RS23795 (MRY70_23795) | 5401652..5402296 | - | 645 | WP_009618224.1 | transcriptional regulator | - |
| PM1_RS23800 (MRY70_23800) | 5402311..5403111 | - | 801 | WP_202883186.1 | TIGR04255 family protein | - |
| PM1_RS23805 (MRY70_23805) | 5403234..5403653 | - | 420 | WP_009618220.1 | helix-turn-helix domain-containing protein | - |
| PM1_RS23810 (MRY70_23810) | 5404277..5405038 | + | 762 | WP_009618218.1 | hypothetical protein | - |
| PM1_RS23815 (MRY70_23815) | 5405149..5405367 | + | 219 | WP_009461157.1 | AlpA family transcriptional regulator | - |
| PM1_RS23820 (MRY70_23820) | 5405410..5406276 | + | 867 | WP_009618216.1 | hypothetical protein | VF |
| PM1_RS23825 (MRY70_23825) | 5406260..5406508 | + | 249 | WP_009618214.1 | hypothetical protein | - |
| PM1_RS23830 (MRY70_23830) | 5406501..5408144 | + | 1644 | WP_009618213.1 | ParB family protein | - |
| PM1_RS23835 (MRY70_23835) | 5408164..5408724 | + | 561 | WP_009618212.1 | DUF2857 domain-containing protein | - |
| PM1_RS23840 (MRY70_23840) | 5408727..5409869 | + | 1143 | WP_009618211.1 | STY4528 family pathogenicity island replication protein | - |
| PM1_RS23845 (MRY70_23845) | 5409997..5410296 | + | 300 | WP_009618210.1 | type II toxin-antitoxin system RelB/DinJ family antitoxin | Antitoxin Detail |
| PM1_RS23850 (MRY70_23850) | 5410283..5410570 | + | 288 | WP_009618209.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| PM1_RS23855 (MRY70_23855) | 5410599..5410790 | + | 192 | WP_009618207.1 | hypothetical protein | - |
| PM1_RS23860 (MRY70_23860) | 5410914..5411693 | + | 780 | WP_009618206.1 | TIGR03761 family integrating conjugative element protein | - |
| PM1_RS23865 (MRY70_23865) | 5411690..5412238 | + | 549 | WP_009618205.1 | DUF3158 family protein | - |
| PM1_RS23870 (MRY70_23870) | 5412235..5412618 | + | 384 | WP_003141056.1 | single-stranded DNA-binding protein | - |
| PM1_RS23875 (MRY70_23875) | 5412914..5414944 | + | 2031 | WP_009618204.1 | DNA topoisomerase III | - |
| PM1_RS23880 (MRY70_23880) | 5415751..5416002 | + | 252 | WP_009618203.1 | hypothetical protein | - |
| PM1_RS23885 (MRY70_23885) | 5416028..5416420 | + | 393 | WP_009618202.1 | hypothetical protein | - |
| PM1_RS23890 (MRY70_23890) | 5416643..5417359 | + | 717 | WP_009618201.1 | hypothetical protein | - |
| PM1_RS23895 (MRY70_23895) | 5417418..5418038 | - | 621 | WP_024128194.1 | LysE family translocator | - |
| PM1_RS23900 (MRY70_23900) | 5418461..5419012 | + | 552 | WP_009618199.1 | STY4534 family ICE replication protein | - |
| PM1_RS23905 (MRY70_23905) | 5419068..5419679 | + | 612 | WP_009618198.1 | DUF3275 family protein | - |
| PM1_RS23910 (MRY70_23910) | 5419769..5420134 | + | 366 | WP_009618196.1 | hypothetical protein | - |
| PM1_RS23915 (MRY70_23915) | 5420219..5420869 | + | 651 | WP_009618194.1 | hypothetical protein | - |
| PM1_RS23920 (MRY70_23920) | 5420935..5422044 | + | 1110 | WP_009618192.1 | DUF6094 domain-containing protein | - |
| PM1_RS23925 (MRY70_23925) | 5422148..5422453 | + | 306 | WP_009618190.1 | hypothetical protein | - |
| PM1_RS23930 (MRY70_23930) | 5422564..5424837 | + | 2274 | WP_009618188.1 | helicase-related protein | - |
| PM1_RS23935 (MRY70_23935) | 5424977..5425561 | + | 585 | WP_009618186.1 | hypothetical protein | VF |
| PM1_RS23940 (MRY70_23940) | 5425558..5426205 | + | 648 | WP_009618184.1 | hypothetical protein | - |
| PM1_RS23945 (MRY70_23945) | 5426235..5426966 | + | 732 | WP_024128193.1 | TIGR03759 family integrating conjugative element protein | - |
| PM1_RS23950 (MRY70_23950) | 5426951..5427529 | + | 579 | WP_009618180.1 | hypothetical protein | VF |
| PM1_RS23955 (MRY70_23955) | 5427526..5428077 | + | 552 | WP_024128192.1 | integrating conjugative element protein | - |
| PM1_RS23960 (MRY70_23960) | 5428088..5430247 | + | 2160 | WP_009618178.1 | type IV conjugative transfer system coupling protein TraD | - |
| PM1_RS23965 (MRY70_23965) | 5430244..5430993 | + | 750 | WP_009618177.1 | TIGR03747 family integrating conjugative element membrane protein | - |
| PM1_RS23970 (MRY70_23970) | 5430990..5432408 | - | 1419 | WP_009618176.1 | UvrD-helicase domain-containing protein | - |
| PM1_RS23975 (MRY70_23975) | 5432395..5434128 | - | 1734 | WP_009618175.1 | ATP-binding protein | - |
| PM1_RS23980 (MRY70_23980) | 5434233..5437247 | - | 3015 | WP_009618170.1 | DEAD/DEAH box helicase family protein | - |
| PM1_RS23985 (MRY70_23985) | 5437258..5439156 | - | 1899 | WP_009618168.1 | site-specific DNA-methyltransferase | - |
| PM1_RS23990 (MRY70_23990) | 5439183..5439974 | - | 792 | WP_043300197.1 | DUF4391 domain-containing protein | - |
| PM1_RS23995 (MRY70_23995) | 5439983..5442205 | - | 2223 | WP_009618164.1 | S8 family peptidase | - |
| PM1_RS24000 (MRY70_24000) | 5442333..5443304 | - | 972 | WP_242935539.1 | ATP-binding protein | - |
| PM1_RS24005 (MRY70_24005) | 5443367..5446567 | - | 3201 | WP_009618160.1 | helicase-related protein | - |
| PM1_RS24010 (MRY70_24010) | 5446564..5446794 | - | 231 | WP_009618159.1 | helix-turn-helix domain-containing protein | - |
| PM1_RS24015 (MRY70_24015) | 5447206..5447580 | + | 375 | WP_009618157.1 | RAQPRD family integrative conjugative element protein | - |
| PM1_RS24020 (MRY70_24020) | 5447577..5447810 | + | 234 | WP_009463356.1 | TIGR03758 family integrating conjugative element protein | - |
| PM1_RS24025 (MRY70_24025) | 5447834..5448193 | + | 360 | WP_009618155.1 | TIGR03745 family integrating conjugative element membrane protein | - |
| PM1_RS24030 (MRY70_24030) | 5448200..5448610 | + | 411 | WP_009463352.1 | TIGR03750 family conjugal transfer protein | - |
| PM1_RS24035 (MRY70_24035) | 5448607..5449296 | + | 690 | WP_009618153.1 | TIGR03746 family integrating conjugative element protein | - |
| PM1_RS24040 (MRY70_24040) | 5449293..5450180 | + | 888 | WP_009618151.1 | TIGR03749 family integrating conjugative element protein | - |
| PM1_RS24045 (MRY70_24045) | 5450170..5451588 | + | 1419 | WP_009618150.1 | TIGR03752 family integrating conjugative element protein | - |
| PM1_RS24050 (MRY70_24050) | 5451569..5452000 | + | 432 | WP_009618148.1 | TIGR03751 family conjugal transfer lipoprotein | - |
| PM1_RS24055 (MRY70_24055) | 5452000..5454879 | + | 2880 | WP_009618146.1 | conjugative transfer ATPase | - |
| PM1_RS24060 (MRY70_24060) | 5454892..5455668 | + | 777 | WP_009618143.1 | thioredoxin domain-containing protein | - |
| PM1_RS24065 (MRY70_24065) | 5456306..5457208 | - | 903 | WP_009618141.1 | LysR family transcriptional regulator | - |
| PM1_RS24070 (MRY70_24070) | 5457304..5457729 | - | 426 | WP_201267685.1 | CopD family protein | - |
| PM1_RS24075 (MRY70_24075) | 5457729..5458097 | - | 369 | WP_027350538.1 | DUF3817 domain-containing protein | - |
| PM1_RS24080 (MRY70_24080) | 5458228..5459256 | + | 1029 | WP_238603215.1 | helix-turn-helix domain-containing protein | - |
| PM1_RS24085 (MRY70_24085) | 5459481..5460707 | - | 1227 | WP_009618137.1 | MFS transporter | - |
| PM1_RS24090 (MRY70_24090) | 5460918..5461121 | + | 204 | WP_009618136.1 | MerR family DNA-binding transcriptional regulator | - |
| PM1_RS24095 (MRY70_24095) | 5461137..5461331 | + | 195 | Protein_4758 | IS3 family transposase | - |
| PM1_RS24100 (MRY70_24100) | 5461419..5461784 | - | 366 | WP_012492788.1 | MerR family transcriptional regulator | - |
| PM1_RS24105 (MRY70_24105) | 5461874..5462782 | + | 909 | WP_009618135.1 | alpha/beta hydrolase | - |
| PM1_RS24110 (MRY70_24110) | 5462808..5463743 | + | 936 | WP_009618134.1 | alpha/beta hydrolase | - |
| PM1_RS24115 (MRY70_24115) | 5464207..5465106 | - | 900 | WP_024128188.1 | LysR family transcriptional regulator | - |
| PM1_RS24120 (MRY70_24120) | 5465206..5465598 | + | 393 | WP_009618132.1 | nuclear transport factor 2 family protein | - |
| PM1_RS24125 (MRY70_24125) | 5465841..5466053 | + | 213 | WP_009618131.1 | ParD-like family protein | - |
| PM1_RS24130 (MRY70_24130) | 5466050..5466817 | + | 768 | WP_009618130.1 | type I methionyl aminopeptidase | - |
| PM1_RS24135 (MRY70_24135) | 5466946..5467188 | - | 243 | WP_052754977.1 | hypothetical protein | - |
| PM1_RS24140 (MRY70_24140) | 5467291..5468079 | - | 789 | WP_009618129.1 | alpha/beta hydrolase | - |
| PM1_RS24145 (MRY70_24145) | 5468227..5469135 | + | 909 | WP_238603214.1 | hypothetical protein | VF |
| PM1_RS24150 (MRY70_24150) | 5469277..5469813 | - | 537 | WP_178132229.1 | TetR/AcrR family transcriptional regulator | - |
| PM1_RS24155 (MRY70_24155) | 5469936..5470625 | - | 690 | WP_009618127.1 | glutathione S-transferase | - |
| PM1_RS24160 (MRY70_24160) | 5471130..5472023 | - | 894 | WP_009618126.1 | hypothetical protein | VF |
| PM1_RS24165 (MRY70_24165) | 5472187..5473005 | + | 819 | WP_238603238.1 | alpha/beta hydrolase | - |
| PM1_RS24170 (MRY70_24170) | 5473024..5474442 | + | 1419 | WP_009618124.1 | 3-isopropylmalate dehydratase large subunit | - |
| PM1_RS24175 (MRY70_24175) | 5474439..5475074 | + | 636 | WP_009618116.1 | 3-isopropylmalate dehydratase small subunit | - |
| PM1_RS24180 (MRY70_24180) | 5475338..5476591 | + | 1254 | WP_009618115.1 | IS256 family transposase IS1090 | Transposase |
| PM1_RS24185 (MRY70_24185) | 5476752..5476922 | - | 171 | WP_009618114.1 | putative ATP-binding component of ABC transporter | - |
| PM1_RS24190 (MRY70_24190) | 5477051..5477203 | + | 153 | Protein_4777 | type I methionyl aminopeptidase | - |
| PM1_RS24195 (MRY70_24195) | 5477498..5477935 | + | 438 | WP_024128185.1 | TIGR03757 family integrating conjugative element protein | - |
| PM1_RS24200 (MRY70_24200) | 5477932..5478882 | + | 951 | WP_009618112.1 | TIGR03756 family integrating conjugative element protein | - |
| PM1_RS24205 (MRY70_24205) | 5478894..5480291 | + | 1398 | WP_009618111.1 | integrating conjugative element protein | - |
| PM1_RS24210 (MRY70_24210) | 5480288..5480638 | + | 351 | WP_009618109.1 | hypothetical protein | - |
| PM1_RS24215 (MRY70_24215) | 5480652..5482175 | + | 1524 | WP_009618107.1 | conjugal transfer protein TraG N-terminal domain-containing protein | - |
| PM1_RS24220 (MRY70_24220) | 5482189..5482560 | - | 372 | WP_009618105.1 | DUF3742 family protein | - |
| PM1_RS24225 (MRY70_24225) | 5482617..5483018 | - | 402 | WP_230584641.1 | putative toxin-antitoxin system toxin component, PIN family | - |
| PM1_RS24230 (MRY70_24230) | 5483030..5483248 | - | 219 | WP_009618101.1 | AbrB/MazE/SpoVT family DNA-binding domain-containing protein | - |
| PM1_RS24235 (MRY70_24235) | 5483577..5485370 | + | 1794 | WP_009618099.1 | MobH family relaxase | - |
| PM1_RS24240 (MRY70_24240) | 5485435..5485953 | - | 519 | WP_006489022.1 | class I SAM-dependent methyltransferase | - |
| PM1_RS24245 (MRY70_24245) | 5485950..5486873 | - | 924 | WP_009618096.1 | NAD(P)/FAD-dependent oxidoreductase | - |
| PM1_RS24250 (MRY70_24250) | 5486870..5487319 | - | 450 | WP_009618094.1 | Rrf2 family transcriptional regulator | - |
| PM1_RS24255 (MRY70_24255) | 5487440..5487739 | - | 300 | WP_009618091.1 | helix-turn-helix transcriptional regulator | - |
| PM1_RS24260 (MRY70_24260) | 5487844..5488467 | + | 624 | WP_009618084.1 | LysR family substrate-binding domain-containing protein | - |
| PM1_RS24265 (MRY70_24265) | 5488495..5490420 | - | 1926 | WP_009618082.1 | hypothetical protein ; Integrase | Integrase |
| PM1_RS24275 (MRY70_24275) | 5490896..5491459 | + | 564 | WP_009618080.1 | periplasmic protein-like protein | - |
| PM1_RS24280 (MRY70_24280) | 5491675..5492775 | + | 1101 | WP_009618079.1 | polyamine ABC transporter substrate-binding protein | - |
| PM1_RS24285 (MRY70_24285) | 5493090..5494307 | + | 1218 | WP_009618077.1 | GGDEF domain-containing protein | - |
| PM1_RS24290 (MRY70_24290) | 5494415..5494798 | - | 384 | WP_242935551.1 | hypothetical protein | - |
| PM1_RS24295 (MRY70_24295) | 5494709..5495518 | + | 810 | WP_009618075.1 | type 1 glutamine amidotransferase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|