MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 120781 bp
Accession: NZ_CP093280 Location: 5909932..6030712 Organism: Pseudomonas sp. T1-3-2 Replicon: chromosome
Accession: NZ_CP093280 Location: 5909932..6030712 Organism: Pseudomonas sp. T1-3-2 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LZ023_RS26860 (LZ023_26820) | 5905578..5905916 | + | 339 | WP_268143367.1 | hypothetical protein | - |
| LZ023_RS26865 (LZ023_26825) | 5905913..5906125 | + | 213 | WP_268143369.1 | hypothetical protein | - |
| LZ023_RS26870 (LZ023_26830) | 5906122..5906385 | + | 264 | WP_268143371.1 | hypothetical protein | - |
| LZ023_RS26875 (LZ023_26835) | 5906451..5906861 | + | 411 | WP_268143373.1 | hypothetical protein | - |
| LZ023_RS26880 (LZ023_26840) | 5906915..5907703 | + | 789 | WP_268143374.1 | hypothetical protein | - |
| LZ023_RS26885 (LZ023_26845) | 5907700..5908167 | + | 468 | WP_268143376.1 | DUF2591 family protein | - |
| LZ023_RS26890 (LZ023_26850) | 5908164..5908376 | + | 213 | WP_268143377.1 | hypothetical protein | - |
| LZ023_RS26895 (LZ023_26855) | 5908413..5908664 | + | 252 | WP_268143379.1 | DUF4224 domain-containing protein | - |
| LZ023_RS26900 (LZ023_26860) | 5908667..5909716 | + | 1050 | WP_268143380.1 | tyrosine-type recombinase/integrase | - |
| LZ023_RS26910 (LZ023_26870) | 5910724..5911476 | + | 753 | WP_033972340.1 | hypothetical protein | - |
| LZ023_RS26915 (LZ023_26875) | 5911595..5911807 | + | 213 | WP_009459729.1 | AlpA family transcriptional regulator | - |
| LZ023_RS26920 (LZ023_26880) | 5911850..5912725 | + | 876 | WP_268143381.1 | Sporulation initiation inhibitor protein Soj | VF |
| LZ023_RS26925 (LZ023_26885) | 5912709..5912957 | + | 249 | WP_019726333.1 | hypothetical protein | - |
| LZ023_RS26930 (LZ023_26890) | 5912950..5914614 | + | 1665 | WP_268143382.1 | ParB family protein | - |
| LZ023_RS26935 (LZ023_26895) | 5914630..5915190 | + | 561 | WP_268143384.1 | DUF2857 domain-containing protein | - |
| LZ023_RS26940 (LZ023_26900) | 5915194..5916420 | + | 1227 | WP_268143386.1 | STY4528 family pathogenicity island replication protein | - |
| LZ023_RS26945 (LZ023_26905) | 5916739..5917518 | + | 780 | WP_268143388.1 | TIGR03761 family integrating conjugative element protein | - |
| LZ023_RS26950 (LZ023_26910) | 5917515..5918042 | + | 528 | WP_009459718.1 | DUF3158 family protein | - |
| LZ023_RS26955 (LZ023_26915) | 5918115..5918555 | + | 441 | WP_024008204.1 | single-stranded DNA-binding protein | - |
| LZ023_RS26960 (LZ023_26920) | 5918836..5920848 | + | 2013 | WP_268143392.1 | DNA topoisomerase III | - |
| LZ023_RS26965 (LZ023_26925) | 5921368..5922978 | + | 1611 | WP_268143394.1 | DNA cytosine methyltransferase | - |
| LZ023_RS26970 (LZ023_26930) | 5923221..5923794 | + | 574 | Protein_5308 | hypothetical protein | - |
| LZ023_RS26975 (LZ023_26935) | 5924125..5924336 | + | 212 | Protein_5309 | hypothetical protein | - |
| LZ023_RS26980 (LZ023_26940) | 5924358..5924750 | + | 393 | WP_023103928.1 | hypothetical protein | - |
| LZ023_RS26985 (LZ023_26945) | 5924926..5925612 | + | 687 | WP_268143396.1 | hypothetical protein | - |
| LZ023_RS26990 (LZ023_26950) | 5925693..5926429 | + | 737 | Protein_5312 | ABC transporter substrate-binding protein | - |
| LZ023_RS26995 (LZ023_26955) | 5926526..5926804 | + | 279 | WP_020207202.1 | hypothetical protein | - |
| LZ023_RS27000 (LZ023_26960) | 5927093..5927905 | + | 813 | WP_268143398.1 | GTPase | - |
| LZ023_RS27005 (LZ023_26965) | 5928050..5928403 | + | 354 | WP_268143400.1 | DUF3085 domain-containing protein | - |
| LZ023_RS27010 (LZ023_26970) | 5928517..5929164 | + | 648 | WP_268143401.1 | hypothetical protein | - |
| LZ023_RS27015 (LZ023_26975) | 5929318..5930226 | + | 909 | WP_268143403.1 | DUF3577 domain-containing protein | - |
| LZ023_RS27020 (LZ023_26980) | 5930283..5930972 | + | 690 | WP_268143405.1 | DUF3275 family protein | - |
| LZ023_RS27025 (LZ023_26985) | 5931067..5931390 | + | 324 | WP_268143407.1 | hypothetical protein | - |
| LZ023_RS27030 (LZ023_26990) | 5931577..5932224 | + | 648 | WP_268151635.1 | hypothetical protein | - |
| LZ023_RS27035 (LZ023_26995) | 5932289..5933398 | + | 1110 | WP_268143409.1 | DUF6094 domain-containing protein | - |
| LZ023_RS27040 (LZ023_27000) | 5933500..5935779 | + | 2280 | WP_268143411.1 | helicase-related protein | - |
| LZ023_RS27045 (LZ023_27005) | 5935892..5936761 | + | 870 | WP_268143413.1 | hypothetical protein | - |
| LZ023_RS27050 (LZ023_27010) | 5936922..5937521 | + | 600 | WP_268143415.1 | hypothetical protein | VF |
| LZ023_RS27055 (LZ023_27015) | 5937518..5938162 | + | 645 | WP_268143417.1 | hypothetical protein | - |
| LZ023_RS27060 (LZ023_27020) | 5938177..5938902 | + | 726 | WP_268143418.1 | TIGR03759 family integrating conjugative element protein | - |
| LZ023_RS27065 (LZ023_27025) | 5938884..5939474 | + | 591 | WP_268143420.1 | hypothetical protein | VF |
| LZ023_RS27070 (LZ023_27030) | 5939471..5940010 | + | 540 | WP_268143422.1 | integrating conjugative element protein | - |
| LZ023_RS27075 (LZ023_27035) | 5940015..5942198 | + | 2184 | WP_268143424.1 | type IV conjugative transfer system coupling protein TraD | - |
| LZ023_RS27080 (LZ023_27040) | 5942195..5942944 | + | 750 | WP_268143426.1 | TIGR03747 family integrating conjugative element membrane protein | - |
| LZ023_RS27085 (LZ023_27045) | 5942949..5945573 | - | 2625 | WP_268143428.1 | AAA family ATPase | - |
| LZ023_RS27090 (LZ023_27050) | 5945763..5946488 | - | 726 | WP_268143429.1 | CBASS effector endonuclease NucC | - |
| LZ023_RS27095 (LZ023_27055) | 5946525..5947427 | - | 903 | WP_268143430.1 | CBASS oligonucleotide cyclase | - |
| LZ023_RS27100 (LZ023_27060) | 5947427..5947927 | - | 501 | WP_268143431.1 | type III CBASS phage resistance system CD-NTase-associated protein Cap7 | - |
| LZ023_RS27105 (LZ023_27065) | 5947924..5948394 | - | 471 | WP_268151637.1 | hypothetical protein | - |
| LZ023_RS27110 (LZ023_27070) | 5948394..5949305 | - | 912 | WP_268143433.1 | AAA family ATPase | - |
| LZ023_RS27115 (LZ023_27075) | 5949323..5949898 | - | 576 | WP_268143435.1 | PIN domain-containing protein | Toxin Detail |
| LZ023_RS27120 (LZ023_27080) | 5949895..5950362 | - | 468 | WP_268143437.1 | helix-turn-helix domain-containing protein | Antitoxin Detail |
| LZ023_RS27125 (LZ023_27085) | 5950576..5950959 | + | 384 | WP_268143439.1 | RAQPRD family integrative conjugative element protein | - |
| LZ023_RS27130 (LZ023_27090) | 5950956..5951189 | + | 234 | WP_268143440.1 | TIGR03758 family integrating conjugative element protein | - |
| LZ023_RS27135 (LZ023_27095) | 5951206..5951565 | + | 360 | WP_268143441.1 | TIGR03745 family integrating conjugative element membrane protein | - |
| LZ023_RS27140 (LZ023_27100) | 5951578..5951976 | + | 399 | WP_268143443.1 | TIGR03750 family conjugal transfer protein | - |
| LZ023_RS27145 (LZ023_27105) | 5951973..5952662 | + | 690 | WP_268143444.1 | TIGR03746 family integrating conjugative element protein | - |
| LZ023_RS27150 (LZ023_27110) | 5952659..5953585 | + | 927 | WP_268143445.1 | TIGR03749 family integrating conjugative element protein | - |
| LZ023_RS27155 (LZ023_27115) | 5953575..5954996 | + | 1422 | WP_268143446.1 | TIGR03752 family integrating conjugative element protein | - |
| LZ023_RS27160 (LZ023_27120) | 5954977..5955417 | + | 441 | WP_268143447.1 | TIGR03751 family conjugal transfer lipoprotein | - |
| LZ023_RS27165 (LZ023_27125) | 5955417..5958284 | + | 2868 | WP_268143448.1 | conjugative transfer ATPase | - |
| LZ023_RS27170 (LZ023_27130) | 5958298..5959062 | + | 765 | WP_268143449.1 | DsbA family protein | - |
| LZ023_RS27175 (LZ023_27135) | 5959241..5959732 | + | 492 | Protein_5349 | DNA repair protein RadC | - |
| LZ023_RS27180 (LZ023_27140) | 5959894..5960340 | + | 447 | WP_268143450.1 | TIGR03757 family integrating conjugative element protein | - |
| LZ023_RS27185 (LZ023_27145) | 5960337..5961284 | + | 948 | WP_268143452.1 | TIGR03756 family integrating conjugative element protein | - |
| LZ023_RS27190 (LZ023_27150) | 5961294..5962688 | + | 1395 | WP_268143454.1 | integrating conjugative element protein | - |
| LZ023_RS27195 (LZ023_27155) | 5962685..5963041 | + | 357 | WP_268143456.1 | hypothetical protein | - |
| LZ023_RS27200 (LZ023_27160) | 5963057..5964580 | + | 1524 | WP_268143458.1 | conjugal transfer protein TraG N-terminal domain-containing protein | - |
| LZ023_RS27205 (LZ023_27165) | 5964672..5965025 | + | 354 | WP_268143460.1 | hypothetical protein | - |
| LZ023_RS27210 (LZ023_27170) | 5965030..5965386 | - | 357 | WP_268143461.1 | DUF3742 family protein | - |
| LZ023_RS27215 (LZ023_27175) | 5965471..5966103 | - | 633 | WP_268143462.1 | RES family NAD+ phosphorylase | - |
| LZ023_RS27220 (LZ023_27180) | 5966116..5966742 | - | 627 | WP_268143463.1 | integrase | - |
| LZ023_RS27225 (LZ023_27185) | 5967061..5968887 | + | 1827 | WP_268143464.1 | MobH family relaxase | - |
| LZ023_RS27230 (LZ023_27190) | 5969010..5969285 | - | 276 | Protein_5360 | MerR family DNA-binding protein | - |
| LZ023_RS27235 (LZ023_27195) | 5969376..5969561 | - | 186 | WP_268151639.1 | universal stress protein | - |
| LZ023_RS27240 (LZ023_27200) | 5969682..5970311 | + | 630 | Protein_5362 | MFS transporter | - |
| LZ023_RS27245 (LZ023_27205) | 5970904..5971641 | - | 738 | Protein_5363 | type VI secretion protein | - |
| LZ023_RS27250 (LZ023_27210) | 5971784..5973181 | - | 1398 | WP_268143465.1 | Atrazine chlorohydrolase | VF |
| LZ023_RS27255 (LZ023_27215) | 5973221..5974039 | - | 819 | WP_268143466.1 | sugar phosphate isomerase/epimerase family protein | - |
| LZ023_RS27260 (LZ023_27220) | 5974036..5975226 | - | 1191 | WP_268143468.1 | L-dopachrome tautomerase-related protein | - |
| LZ023_RS27265 (LZ023_27225) | 5975347..5976402 | - | 1056 | WP_268143469.1 | LacI family DNA-binding transcriptional regulator | - |
| LZ023_RS27270 (LZ023_27230) | 5976509..5977876 | - | 1368 | WP_268143471.1 | cytochrome c | - |
| LZ023_RS27275 (LZ023_27235) | 5977873..5979651 | - | 1779 | WP_268143472.1 | GMC family oxidoreductase | - |
| LZ023_RS27280 (LZ023_27240) | 5979736..5980392 | - | 657 | WP_268143473.1 | gluconate 2-dehydrogenase subunit 3 family protein | - |
| LZ023_RS27285 (LZ023_27245) | 5980569..5982188 | - | 1620 | WP_268143475.1 | Transcriptional regulator KdgR | VF |
| LZ023_RS27290 (LZ023_27250) | 5982381..5983190 | + | 810 | WP_268143476.1 | ribonuclease activity regulator RraA | - |
| LZ023_RS27295 (LZ023_27255) | 5983187..5983501 | + | 315 | WP_268143477.1 | Dabb family protein | - |
| LZ023_RS27300 (LZ023_27260) | 5983566..5984981 | + | 1416 | WP_268143478.1 | MFS transporter | - |
| LZ023_RS27305 (LZ023_27265) | 5985022..5986107 | + | 1086 | WP_268143480.1 | mannonate dehydratase | - |
| LZ023_RS27310 (LZ023_27270) | 5986182..5987444 | - | 1263 | WP_268143482.1 | MFS transporter | - |
| LZ023_RS27315 (LZ023_27275) | 5987779..5989065 | + | 1287 | WP_268143483.1 | MFS transporter | - |
| LZ023_RS27320 (LZ023_27280) | 5989135..5990073 | + | 939 | WP_268143485.1 | alpha/beta hydrolase | - |
| LZ023_RS27325 (LZ023_27285) | 5990079..5990978 | - | 900 | WP_268143487.1 | Hca operon transcriptional activator HcaR | VF |
| LZ023_RS27330 (LZ023_27290) | 5991085..5992242 | + | 1158 | WP_268143489.1 | mandelate racemase/muconate lactonizing enzyme family protein | - |
| LZ023_RS27335 (LZ023_27295) | 5992356..5993678 | + | 1323 | WP_268151641.1 | MFS transporter | - |
| LZ023_RS27340 (LZ023_27300) | 5993691..5994785 | - | 1095 | WP_268143491.1 | mandelate racemase/muconate lactonizing enzyme family protein | - |
| LZ023_RS27345 (LZ023_27305) | 5994818..5995609 | - | 792 | WP_268143492.1 | NAD(P)-dependent oxidoreductase | - |
| LZ023_RS27350 (LZ023_27310) | 5995786..5997171 | - | 1386 | WP_268143494.1 | MFS transporter | - |
| LZ023_RS27355 (LZ023_27315) | 5997350..5998918 | - | 1569 | WP_268143496.1 | altronate dehydratase family protein | - |
| LZ023_RS27360 (LZ023_27320) | 5998937..6000487 | - | 1551 | WP_268143498.1 | altronate dehydratase | - |
| LZ023_RS27365 (LZ023_27325) | 6000623..6001576 | - | 954 | WP_268143500.1 | hypothetical protein | - |
| LZ023_RS27370 (LZ023_27330) | 6001521..6002336 | - | 816 | WP_268143502.1 | ribonuclease activity regulator RraA | - |
| LZ023_RS27375 (LZ023_27335) | 6002483..6004054 | + | 1572 | WP_268143503.1 | Transcriptional regulator KdgR | VF |
| LZ023_RS27380 (LZ023_27340) | 6004218..6004682 | + | 465 | WP_268143504.1 | nuclear transport factor 2 family protein | - |
| LZ023_RS27385 (LZ023_27345) | 6004679..6006079 | + | 1401 | WP_268143506.1 | aldehyde dehydrogenase (NADP(+)) | - |
| LZ023_RS27390 (LZ023_27350) | 6006760..6007395 | - | 636 | WP_268143508.1 | VOC family protein | - |
| LZ023_RS27395 (LZ023_27355) | 6007451..6008326 | - | 876 | WP_268143509.1 | SDR family NAD(P)-dependent oxidoreductase | - |
| LZ023_RS27400 (LZ023_27360) | 6008523..6008822 | + | 300 | WP_268151643.1 | helix-turn-helix domain-containing protein | - |
| LZ023_RS27405 (LZ023_27365) | 6008848..6009645 | - | 798 | WP_268143511.1 | type I methionyl aminopeptidase | - |
| LZ023_RS27410 (LZ023_27370) | 6009680..6010351 | - | 672 | WP_268143512.1 | siderophore-interacting protein | - |
| LZ023_RS27415 (LZ023_27375) | 6010490..6012742 | - | 2253 | WP_268143513.1 | Ferripyoverdine receptor | VF |
| LZ023_RS27420 (LZ023_27380) | 6013297..6014442 | + | 1146 | WP_268143514.1 | efflux RND transporter periplasmic adaptor subunit | - |
| LZ023_RS27425 (LZ023_27385) | 6014454..6017546 | + | 3093 | WP_268143515.1 | Efflux pump membrane transporter BepE | VF |
| LZ023_RS27430 (LZ023_27390) | 6017533..6018999 | + | 1467 | WP_268143516.1 | Solvent efflux pump outer membrane protein SrpC | VF |
| LZ023_RS27435 (LZ023_27395) | 6019135..6019530 | + | 396 | WP_268143517.1 | hypothetical protein | - |
| LZ023_RS27440 (LZ023_27400) | 6019698..6020264 | + | 567 | WP_268143518.1 | transcriptional repressor | - |
| LZ023_RS27445 (LZ023_27405) | 6020648..6021055 | + | 408 | WP_268143519.1 | acyloxyacyl hydrolase | - |
| LZ023_RS27450 (LZ023_27410) | 6021286..6021759 | + | 474 | WP_268143520.1 | ECF RNA polymerase sigma factor SigL | VF |
| LZ023_RS27455 (LZ023_27415) | 6021773..6022459 | + | 687 | WP_268143521.1 | hypothetical protein | - |
| LZ023_RS27460 (LZ023_27420) | 6022669..6023001 | + | 333 | WP_268143522.1 | transcriptional repressor | - |
| LZ023_RS27465 (LZ023_27425) | 6023120..6023797 | + | 678 | WP_268143523.1 | siderophore-interacting protein | - |
| LZ023_RS27470 (LZ023_27430) | 6023905..6024699 | - | 795 | WP_268143524.1 | SDR family NAD(P)-dependent oxidoreductase | - |
| LZ023_RS27475 (LZ023_27435) | 6024800..6025354 | + | 555 | WP_268143525.1 | hypothetical protein | - |
| LZ023_RS27480 (LZ023_27440) | 6025424..6026284 | - | 861 | WP_268143526.1 | helix-turn-helix transcriptional regulator | - |
| LZ023_RS27485 (LZ023_27445) | 6026518..6027408 | + | 891 | WP_268143527.1 | LysR family transcriptional regulator | - |
| LZ023_RS27490 (LZ023_27450) | 6027432..6027725 | - | 294 | WP_268151645.1 | helix-turn-helix transcriptional regulator | - |
| LZ023_RS27495 (LZ023_27455) | 6027841..6028482 | + | 642 | WP_268143528.1 | LysR family substrate-binding domain-containing protein | - |
| LZ023_RS27500 (LZ023_27460) | 6028537..6030469 | - | 1933 | Protein_5414 | Prophage integrase IntS ; Integrase | Integrase |
| LZ023_RS27510 (LZ023_27470) | 6030837..6031397 | - | 561 | WP_268143529.1 | CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase | - |
| LZ023_RS27515 (LZ023_27475) | 6031431..6033254 | - | 1824 | WP_268143530.1 | excinuclease ABC subunit UvrC | - |
| LZ023_RS27520 (LZ023_27480) | 6033257..6033901 | - | 645 | WP_158157164.1 | UvrY/SirA/GacA family response regulator transcription factor | - |
| LZ023_RS27525 (LZ023_27485) | 6034013..6034381 | - | 369 | WP_268143531.1 | helix-turn-helix transcriptional regulator | - |
| LZ023_RS27530 (LZ023_27490) | 6034463..6034675 | + | 213 | WP_158157159.1 | DNA-binding protein | - |
| LZ023_RS27535 (LZ023_27495) | 6034688..6035122 | - | 435 | WP_268143532.1 | GNAT family N-acetyltransferase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|