MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 53201 bp
Accession: NZ_CP092458 Location: 1999943..2053143 Organism: Dickeya fangzhongdai strain 643b Replicon: chromosome
Accession: NZ_CP092458 Location: 1999943..2053143 Organism: Dickeya fangzhongdai strain 643b Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| MJO48_RS08930 (MJO48_08930) | 1995243..1995800 | + | 558 | WP_019845674.1 | hypothetical protein | - |
| MJO48_RS08935 (MJO48_08935) | 1996083..1997009 | - | 927 | WP_239788936.1 | hypothetical protein | - |
| MJO48_RS08940 (MJO48_08940) | 1998031..1998342 | + | 312 | WP_239788937.1 | DUF736 domain-containing protein | - |
| MJO48_RS08945 (MJO48_08945) | 1998502..1999785 | - | 1284 | WP_239788938.1 | integrase arm-type DNA-binding domain-containing protein | - |
| MJO48_RS08950 (MJO48_08950) | 2000112..2001161 | - | 1050 | WP_239788939.1 | hypothetical protein ; Integrase | Integrase |
| MJO48_RS08955 (MJO48_08955) | 2001161..2001385 | - | 225 | WP_216282492.1 | DUF4224 domain-containing protein | - |
| MJO48_RS08960 (MJO48_08960) | 2001378..2001650 | - | 273 | WP_239788940.1 | hypothetical protein | - |
| MJO48_RS08965 (MJO48_08965) | 2001908..2002417 | + | 510 | WP_239788941.1 | DNA repair protein RadC | - |
| MJO48_RS08970 (MJO48_08970) | 2003010..2003321 | + | 312 | WP_239788942.1 | DUF736 domain-containing protein | - |
| MJO48_RS08975 (MJO48_08975) | 2004032..2004829 | + | 798 | WP_239788943.1 | DUF2285 domain-containing protein | - |
| MJO48_RS08980 (MJO48_08980) | 2004913..2005209 | + | 297 | WP_012768890.1 | helix-turn-helix domain-containing protein | - |
| MJO48_RS08985 (MJO48_08985) | 2005236..2006048 | + | 813 | WP_239789165.1 | replication initiator protein A | - |
| MJO48_RS08990 (MJO48_08990) | 2006358..2006903 | + | 546 | WP_239788944.1 | S26 family signal peptidase | - |
| MJO48_RS08995 (MJO48_08995) | 2007104..2009044 | + | 1941 | WP_239788945.1 | relaxase/mobilization nuclease and DUF3363 domain-containing protein | - |
| MJO48_RS09000 (MJO48_09000) | 2009080..2009412 | - | 333 | WP_239789166.1 | helix-turn-helix transcriptional regulator | - |
| MJO48_RS09005 (MJO48_09005) | 2009749..2010252 | - | 504 | WP_239788946.1 | very short patch repair endonuclease | - |
| MJO48_RS09010 (MJO48_09010) | 2010851..2012215 | + | 1365 | WP_239788947.1 | DNA cytosine methyltransferase | - |
| MJO48_RS09015 (MJO48_09015) | 2012215..2013195 | + | 981 | WP_239788948.1 | DUF4928 family protein | - |
| MJO48_RS09020 (MJO48_09020) | 2013308..2014418 | + | 1111 | WP_239788949.1 | IS3 family transposase IS1400 | Transposase |
| MJO48_RS09025 (MJO48_09025) | 2014611..2014860 | - | 250 | Protein_1764 | integrase core domain-containing protein | - |
| MJO48_RS09035 (MJO48_09035) | 2016192..2016464 | - | 273 | WP_239788950.1 | hypothetical protein | - |
| MJO48_RS09040 (MJO48_09040) | 2016464..2018140 | - | 1677 | WP_239788951.1 | ABC transporter ATP-binding/permease protein YojI | VF |
| MJO48_RS09045 (MJO48_09045) | 2018222..2048812 | - | 30591 | WP_239788952.1 | Tyrocidine synthase 3 | VF |
| MJO48_RS09050 (MJO48_09050) | 2049065..2049526 | - | 462 | Protein_1769 | IS110 family transposase ISEc32 | Transposase |
| MJO48_RS09055 (MJO48_09055) | 2049806..2050135 | + | 330 | Protein_1770 | ArdC family protein | - |
| MJO48_RS09060 (MJO48_09060) | 2050377..2051333 | + | 957 | WP_239788953.1 | group II intron maturase-specific domain-containing protein | - |
| MJO48_RS09065 (MJO48_09065) | 2051488..2051820 | + | 333 | Protein_1772 | zincin-like metallopeptidase domain-containing protein | - |
| MJO48_RS09070 (MJO48_09070) | 2051989..2052225 | + | 237 | WP_042860409.1 | type II toxin-antitoxin system CcdA family antitoxin | Antitoxin Detail |
| MJO48_RS09075 (MJO48_09075) | 2052228..2052542 | + | 315 | WP_239788954.1 | CcdB family protein | Toxin Detail |
| MJO48_RS09080 (MJO48_09080) | 2052539..2052682 | - | 144 | Protein_1775 | molybdopterin-guanine dinucleotide biosynthesis protein MobC | - |
| MJO48_RS09090 (MJO48_09090) | 2053282..2054073 | - | 792 | WP_100849352.1 | DgsA anti-repressor MtfA | - |
| MJO48_RS09100 (MJO48_09100) | 2054659..2055006 | + | 348 | WP_038918678.1 | DUF3168 domain-containing protein | - |
| MJO48_RS09105 (MJO48_09105) | 2055111..2057312 | + | 2202 | WP_239788955.1 | discoidin domain-containing protein | - |
| MJO48_RS09110 (MJO48_09110) | 2057469..2057636 | + | 168 | WP_038918679.1 | YqaE/Pmp3 family membrane protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|