MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 38910 bp
Accession: NZ_CP092070 Location: 1131157..1170066 Organism: Pectobacterium sp. PL64 Replicon: chromosome
Accession: NZ_CP092070 Location: 1131157..1170066 Organism: Pectobacterium sp. PL64 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HP572_RS04750 (HP572_04750) | 1126553..1127734 | + | 1182 | WP_240584907.1 | MFS transporter | - |
| HP572_RS04755 (HP572_04755) | 1127853..1128461 | - | 609 | WP_023345578.1 | short chain dehydrogenase | - |
| HP572_RS04760 (HP572_04760) | 1128559..1129437 | + | 879 | WP_240584908.1 | LysR family transcriptional regulator | - |
| HP572_RS04765 (HP572_04765) | 1129758..1130986 | - | 1229 | Protein_929 | tyrosine-type recombinase/integrase | - |
| HP572_RS04770 (HP572_04770) | 1131550..1132050 | + | 501 | WP_240584909.1 | hypothetical protein | - |
| HP572_RS04775 (HP572_04775) | 1132267..1132776 | + | 510 | WP_240584910.1 | hypothetical protein | - |
| HP572_RS04780 (HP572_04780) | 1133047..1134153 | - | 1107 | WP_240584911.1 | hypothetical protein | - |
| HP572_RS04785 (HP572_04785) | 1134235..1134405 | + | 171 | Protein_933 | SDR family NAD(P)-dependent oxidoreductase | - |
| HP572_RS04790 (HP572_04790) | 1134992..1135909 | + | 918 | WP_240584912.1 | DUF2971 domain-containing protein | - |
| HP572_RS04795 (HP572_04795) | 1136408..1136647 | + | 240 | WP_111778826.1 | hypothetical protein | - |
| HP572_RS04800 (HP572_04800) | 1136699..1136989 | + | 291 | WP_111778825.1 | hypothetical protein | VF |
| HP572_RS04805 (HP572_04805) | 1136970..1137941 | + | 972 | WP_240584913.1 | reverse transcriptase family protein | - |
| HP572_RS04810 (HP572_04810) | 1137981..1141832 | + | 3852 | WP_240584914.1 | hypothetical protein | - |
| HP572_RS04815 (HP572_04815) | 1142924..1143764 | + | 841 | Protein_939 | ArdC-like ssDNA-binding domain-containing protein | - |
| HP572_RS04820 (HP572_04820) | 1144085..1144321 | + | 237 | WP_014699357.1 | type II toxin-antitoxin system CcdA family antitoxin | Antitoxin Detail |
| HP572_RS04825 (HP572_04825) | 1144324..1144638 | + | 315 | WP_240584915.1 | CcdB family protein | Toxin Detail |
| HP572_RS04830 (HP572_04830) | 1145096..1145686 | - | 591 | WP_240584916.1 | DUF4326 domain-containing protein | - |
| HP572_RS04835 (HP572_04835) | 1145683..1146123 | - | 441 | WP_240584917.1 | DUF488 domain-containing protein | - |
| HP572_RS04840 (HP572_04840) | 1146140..1146814 | - | 675 | WP_240584918.1 | hypothetical protein | - |
| HP572_RS04845 (HP572_04845) | 1147093..1147839 | - | 747 | WP_240584919.1 | MobC family replication-relaxation protein | - |
| HP572_RS04850 (HP572_04850) | 1147848..1149710 | - | 1863 | WP_240584920.1 | type IV secretion system DNA-binding domain-containing protein | - |
| HP572_RS04855 (HP572_04855) | 1149707..1150012 | - | 306 | WP_240584921.1 | hypothetical protein | - |
| HP572_RS04860 (HP572_04860) | 1150430..1150732 | - | 303 | WP_240584922.1 | conjugal transfer protein | - |
| HP572_RS04865 (HP572_04865) | 1150774..1151790 | - | 1017 | WP_240584923.1 | hypothetical protein | VF |
| HP572_RS04870 (HP572_04870) | 1151780..1153012 | - | 1233 | WP_240584924.1 | hypothetical protein | VF |
| HP572_RS04875 (HP572_04875) | 1153009..1153902 | - | 894 | WP_240584925.1 | P-type conjugative transfer protein VirB9 | - |
| HP572_RS04880 (HP572_04880) | 1153899..1154582 | - | 684 | WP_240584926.1 | hypothetical protein | VF |
| HP572_RS04885 (HP572_04885) | 1154575..1154715 | - | 141 | WP_181919098.1 | hypothetical protein | - |
| HP572_RS04890 (HP572_04890) | 1154803..1155843 | - | 1041 | WP_240584927.1 | type IV secretion system protein | - |
| HP572_RS04895 (HP572_04895) | 1155855..1156079 | - | 225 | WP_038907531.1 | EexN family lipoprotein | - |
| HP572_RS04900 (HP572_04900) | 1156090..1156806 | - | 717 | WP_240584928.1 | type IV secretion system protein | - |
| HP572_RS04905 (HP572_04905) | 1156830..1159577 | - | 2748 | WP_240584929.1 | hypothetical protein | VF |
| HP572_RS04910 (HP572_04910) | 1159587..1159868 | - | 282 | WP_240584930.1 | TrbC/VirB2 family protein | - |
| HP572_RS04915 (HP572_04915) | 1159865..1160530 | - | 666 | WP_240585693.1 | hypothetical protein | VF |
| HP572_RS04920 (HP572_04920) | 1160611..1160832 | - | 222 | WP_109226165.1 | hypothetical protein | - |
| HP572_RS04925 (HP572_04925) | 1161389..1164376 | + | 2988 | WP_240584931.1 | DEAD/DEAH box helicase family protein | - |
| HP572_RS04930 (HP572_04930) | 1164771..1164980 | - | 210 | WP_103158133.1 | TraR/DksA family transcriptional regulator | - |
| HP572_RS04935 (HP572_04935) | 1164970..1165554 | - | 585 | WP_240584932.1 | DUF2857 domain-containing protein | - |
| HP572_RS04940 (HP572_04940) | 1165571..1165765 | - | 195 | WP_039285716.1 | AlpA family transcriptional regulator | - |
| HP572_RS04945 (HP572_04945) | 1165919..1166833 | - | 915 | WP_240584933.1 | hypothetical protein | - |
| HP572_RS04950 (HP572_04950) | 1167249..1167521 | - | 273 | WP_240584934.1 | helix-turn-helix transcriptional regulator | - |
| HP572_RS04955 (HP572_04955) | 1167683..1167982 | + | 300 | WP_117624984.1 | helix-turn-helix transcriptional regulator | - |
| HP572_RS04960 (HP572_04960) | 1168169..1168483 | + | 315 | WP_025918867.1 | helix-turn-helix transcriptional regulator | - |
| HP572_RS04965 (HP572_04965) | 1168618..1169889 | - | 1272 | WP_240584935.1 | hypothetical protein ; Integrase | Integrase |
| HP572_RS04975 (HP572_04975) | 1170269..1171531 | - | 1263 | WP_205551275.1 | MFS transporter | - |
| HP572_RS04980 (HP572_04980) | 1171791..1174922 | - | 3132 | WP_240584936.1 | beta-galactosidase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|