MGE detailed information
MGE type: Genomic_island MGE length: 28070 bp
Accession: NZ_CP091756 Location: 4275433..4303502 Organism: Escherichia coli strain LC-1302-2020 Replicon: chromosome
Accession: NZ_CP091756 Location: 4275433..4303502 Organism: Escherichia coli strain LC-1302-2020 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| L6507_RS20725 (4270912) | 4270912..4271415 | - | 504 | WP_000870592.1 | type 1 fimbria minor subunit FimG | - |
| L6507_RS20730 (4271428) | 4271428..4271958 | - | 531 | WP_001244827.1 | type 1 fimbria minor subunit FimF | - |
| L6507_RS20735 (4271968) | 4271968..4274604 | - | 2637 | WP_021573039.1 | fimbrial usher FimD | - |
| L6507_RS20740 (4274671) | 4274671..4275396 | - | 726 | WP_000066560.1 | type 1 fimbria chaperone FimC | - |
| L6507_RS20745 (4275433) | 4275433..4275972 | - | 540 | WP_000824114.1 | putative major fimbrial subunit LpfA | VF |
| L6507_RS20750 (4276150) | 4276150..4277262 | + | 1113 | WP_001300563.1 | IS4 family transposase IS421 | Transposase |
| L6507_RS20755 (4277422) | 4277422..4277934 | - | 513 | WP_001554667.1 | Type-1 fimbrial protein, A chain | VF |
| L6507_RS20760 (4278417) | 4278417..4279013 | - | 597 | WP_000044711.1 | Tyrosine recombinase XerD | VF |
| L6507_RS20765 (4279491) | 4279491..4280093 | - | 603 | WP_000790583.1 | Tyrosine recombinase XerC | VF |
| L6507_RS20770 (4281550) | 4281550..4282266 | + | 717 | WP_001295734.1 | N-acetylneuraminic acid outer membrane channel NanC | - |
| L6507_RS20775 (4282286) | 4282286..4283392 | + | 1107 | WP_001309184.1 | N-acetylneuraminate epimerase | - |
| L6507_RS20780 (4283457) | 4283457..4284437 | + | 981 | WP_000991438.1 | 9-O-acetyl-N-acetylneuraminic acid deacetylase | - |
| L6507_RS20785 (4284547) | 4284547..4284752 | + | 206 | Protein_4062 | HNH endonuclease | - |
| L6507_RS20790 (4285020) | 4285020..4286260 | - | 1241 | Protein_4063 | helicase YjhR | - |
| L6507_RS20795 (4286376) | 4286376..4286507 | + | 132 | WP_001309182.1 | hypothetical protein | - |
| L6507_RS20800 (4286998) | 4286998..4287255 | + | 258 | WP_001054376.1 | YjhX family toxin | Toxin Detail |
| L6507_RS20805 (4287267) | 4287267..4287812 | + | 546 | WP_001309181.1 | N-acetyltransferase | Antitoxin Detail |
| L6507_RS20810 (4287868) | 4287868..4288614 | + | 747 | WP_000354251.1 | class I SAM-dependent methyltransferase | - |
| L6507_RS20815 (4288783) | 4288783..4289001 | + | 219 | Protein_4068 | hypothetical protein | - |
| L6507_RS20820 (4289039) | 4289039..4289155 | + | 117 | Protein_4069 | VOC family protein | - |
| L6507_RS20825 (4289400) | 4289400..4290521 | + | 1122 | WP_000010829.1 | M42 family metallopeptidase | - |
| L6507_RS20830 (4290518) | 4290518..4290796 | + | 279 | WP_000722973.1 | PTS sugar transporter subunit IIB SgcB | - |
| L6507_RS20835 (4290808) | 4290808..4292121 | + | 1314 | WP_000460843.1 | PTS sugar transporter subunit IIC SgcC | - |
| L6507_RS20840 (4292134) | 4292134..4292940 | + | 807 | WP_000118626.1 | BtpA family protein SgcQ | - |
| L6507_RS20845 (4293071) | 4293071..4293502 | + | 432 | WP_000606406.1 | SgcA family PTS sugar transporter subunit IIA | - |
| L6507_RS20850 (4293514) | 4293514..4294146 | + | 633 | WP_000600622.1 | ribulose-phosphate 3 epimerase family protein | - |
| L6507_RS20855 (4294163) | 4294163..4294945 | + | 783 | WP_000082780.1 | DeoR/GlpR family DNA-binding transcription regulator | - |
| L6507_RS20860 (4295248) | 4295248..4296036 | + | 789 | WP_000251798.1 | IclR family transcriptional regulator | - |
| L6507_RS20865 (4296041) | 4296041..4296946 | + | 906 | WP_001335841.1 | dihydrodipicolinate synthase family protein | - |
| L6507_RS20870 (4296957) | 4296957..4298924 | + | 1968 | WP_000116326.1 | xylonate dehydratase YjhG | - |
| L6507_RS20875 (4299031) | 4299031..4300380 | + | 1350 | WP_001128363.1 | GntP family permease | - |
| L6507_RS20880 (4300727) | 4300727..4301713 | + | 987 | WP_000373366.1 | sugar-binding transcriptional regulator | - |
| L6507_RS20885 (4301754) | 4301754..4302599 | - | 846 | WP_016247886.1 | GRP family sugar transporter | - |
| L6507_RS20890 (4302861) | 4302861..4303502 | - | 642 | WP_000439687.1 | L-fuculose-phosphate aldolase | - |
| L6507_RS20895 (4303533) | 4303533..4304648 | - | 1116 | WP_001022014.1 | S-methyl-5-thioribose-1-phosphate isomerase | - |
| L6507_RS20900 (4304658) | 4304658..4305917 | - | 1260 | WP_000132327.1 | S-methyl-5-thioribose kinase | - |
| L6507_RS20905 (4306657) | 4306657..4306755 | - | 99 | Protein_4086 | toxin | - |
| L6507_RS20910 (4306845) | 4306845..4307213 | - | 369 | WP_001295723.1 | type IV toxin-antitoxin system YeeU family antitoxin | - |
| L6507_RS20915 (4307376) | 4307376..4307597 | - | 222 | WP_000692345.1 | DUF987 domain-containing protein | - |
| L6507_RS20920 (4307660) | 4307660..4308136 | - | 477 | WP_001186775.1 | RadC family protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|