MGE detailed information
MGE type: Genomic_island MGE length: 14146 bp
Accession: NZ_CP091756 Location: 2503185..2517330 Organism: Escherichia coli strain LC-1302-2020 Replicon: chromosome
Accession: NZ_CP091756 Location: 2503185..2517330 Organism: Escherichia coli strain LC-1302-2020 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| L6507_RS12145 (2503185) | 2503185..2503451 | + | 267 | WP_001301023.1 | type II toxin-antitoxin system antitoxin HipB | Antitoxin Detail |
| L6507_RS12150 (2503451) | 2503451..2504773 | + | 1323 | WP_001125439.1 | type II toxin-antitoxin system serine/threonine protein kinase toxin HipA | Toxin Detail |
| L6507_RS12155 (2505085) | 2505085..2505293 | + | 209 | Protein_2379 | AraC family transcriptional regulator | - |
| L6507_RS12160 (2505548) | 2505548..2506774 | + | 1227 | Protein_2380 | Outer membrane usher protein FimD | VF |
| L6507_RS12165 (2506788) | 2506788..2507318 | + | 531 | WP_000876763.1 | Protein FimF | VF |
| L6507_RS12175 (2508616) | 2508616..2509170 | + | 555 | WP_021572821.1 | Protein FimG | VF |
| L6507_RS12180 (2509229) | 2509229..2510143 | + | 915 | WP_021572820.1 | Type 1 fimbrin D-mannose specific adhesin | VF |
| L6507_RS12185 (2510477) | 2510477..2512756 | + | 2280 | WP_000726691.1 | acid resistance putative oxidoreductase YdeP | - |
| L6507_RS12190 (2513004) | 2513004..2513201 | + | 198 | WP_000543384.1 | two-component system connector SafA | - |
| L6507_RS12195 (2513276) | 2513276..2514037 | + | 762 | WP_000060492.1 | acid stress response transcriptional regulator YdeO | - |
| L6507_RS12200 (2514439) | 2514439..2516121 | + | 1683 | WP_001295684.1 | sulfatase | - |
| L6507_RS12205 (2516173) | 2516173..2517330 | + | 1158 | WP_001301030.1 | anaerobic sulfatase maturase | - |
| L6507_RS12210 (2517296) | 2517296..2517418 | - | 123 | WP_120795387.1 | protein YneP | - |
| L6507_RS12215 (2517621) | 2517621..2519306 | + | 1686 | WP_021572819.1 | ABC transporter ATP-binding protein/permease | - |
| L6507_RS12220 (2519344) | 2519344..2521716 | + | 2373 | WP_000832437.1 | TonB-dependent receptor plug domain-containing protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli K-12 strain ER3413 | Genomic island | TA20025 | CP009789 | 1561271..1572871 | 0.006 | |
| Escherichia coli str. K-12 substr. MC4100 | Genomic island | TA20066 | HG738867 | 1469371..1480971 | 0.006 | |
| Escherichia coli str. K-12 substr. MG1655 | Genomic island | TA1040 | NC_000913 | 1580842..1592442 | 0.006 | |
| Escherichia coli str. K-12 substr. W3110 | Genomic island | TA21437 | NC_007779 | 1582556..1594156 | 0.006 | |
| Escherichia coli HS | Genomic island | TA22421 | NC_009800 | 1597665..1609265 | 0.007 | |
| Escherichia coli str. K-12 substr. DH10B | Genomic island | TA22685 | NC_010473 | 1669461..1680091 | 0.008 | |
| Escherichia coli BW2952 | Genomic island | TA23853 | NC_012759 | 1470925..1482525 | 0.006 | |
| Escherichia coli DH1 | Genomic island | TA27403 | NC_017638 | 1563024..1574624 | 0.006 | |
| Escherichia coli str. K-12 substr. MDS42 | Genomic island | TA29002 | NC_020518 | 1287669..1299269 | 0.006 | |
| Escherichia coli BW25113 | Genomic island | TA48682 | NZ_CP009273 | 1575099..1586699 | 0.006 | |
| Escherichia coli str. K-12 substr. W3110 strain K-12 substr. ZK126 | Genomic island | TA68424 | NZ_CP017979 | 1484612..1496212 | 0.006 | |
| Escherichia coli strain DH5alpha | Genomic island | TA90478 | NZ_CP025520 | 438284..449884 | 0.006 | |
| Escherichia coli str. K-12 substr. MC4100 strain K-12 | Genomic island | TA285016 | NZ_HG738867 | 1469371..1480971 | 0.006 |