MGE detailed information
MGE type: IScluster/Tn MGE length: 12216 bp
Accession: NZ_CP091756 Location: 2419357..2431572 Organism: Escherichia coli strain LC-1302-2020 Replicon: chromosome
Accession: NZ_CP091756 Location: 2419357..2431572 Organism: Escherichia coli strain LC-1302-2020 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| L6507_RS11630 (2414383) | 2414383..2414688 | - | 306 | WP_001300836.1 | DUF1161 domain-containing protein | - |
| L6507_RS11635 (2414796) | 2414796..2415506 | + | 711 | WP_001321287.1 | YnfC family lipoprotein | - |
| L6507_RS11640 (2415509) | 2415509..2416069 | - | 561 | WP_001138581.1 | spermidine N1-acetyltransferase | - |
| L6507_RS11645 (2416104) | 2416104..2416445 | - | 342 | WP_000705211.1 | DUF1283 family protein | - |
| L6507_RS11650 (2416580) | 2416580..2416906 | + | 327 | WP_000598292.1 | YnfA family protein | - |
| L6507_RS11655 (2417112) | 2417112..2418326 | + | 1215 | WP_001295394.1 | starvation-sensing protein RspA | - |
| L6507_RS11660 (2418338) | 2418338..2419330 | + | 993 | WP_021572829.1 | Zn-dependent oxidoreductase | - |
| L6507_RS11665 (2419357) | 2419357..2420970 | - | 1614 | WP_000080195.1 | IS66 family transposase ISEc23 | Transposase |
| L6507_RS11670 (2421001) | 2421001..2421351 | - | 351 | WP_000624722.1 | IS66 family transposase ISEc23 | Transposase |
| L6507_RS11675 (2421348) | 2421348..2421773 | - | 426 | WP_000422741.1 | IS66 family transposase ISEc23 | Transposase |
| L6507_RS11680 (2422085) | 2422085..2423365 | - | 1281 | WP_000876958.1 | Putative defective protein IntQ ; Integrase | Integrase |
| L6507_RS11685 (2423400) | 2423400..2423651 | - | 252 | WP_000005552.1 | excisionase family protein | - |
| L6507_RS11690 (2423724) | 2423724..2424464 | - | 741 | Protein_2286 | 3'-5' exoribonuclease | - |
| L6507_RS11700 (2426085) | 2426085..2426234 | + | 150 | WP_011443592.1 | protein YdfW | - |
| L6507_RS11705 (2426671) | 2426671..2427003 | - | 333 | WP_001301033.1 | FlxA-like family protein | - |
| L6507_RS11710 (2427206) | 2427206..2427511 | - | 306 | WP_001326990.1 | protein YdfV | - |
| L6507_RS11715 (2427536) | 2427536..2427775 | + | 240 | WP_000534858.1 | type II toxin-antitoxin system antitoxin RelB | Antitoxin Detail |
| L6507_RS11720 (2427775) | 2427775..2428062 | + | 288 | WP_000323025.1 | type II toxin-antitoxin system mRNA interferase RelE | Toxin Detail |
| L6507_RS11725 (2428134) | 2428134..2428289 | + | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | - |
| L6507_RS11730 (2428506) | 2428506..2428757 | + | 252 | WP_000980994.1 | protein Rem | - |
| L6507_RS11735 (2428824) | 2428824..2429102 | + | 279 | WP_032351280.1 | hypothetical protein | - |
| L6507_RS11740 (2429104) | 2429104..2430153 | + | 1050 | WP_001265199.1 | DUF968 domain-containing protein | - |
| L6507_RS11745 (2430167) | 2430167..2430304 | + | 138 | Protein_2297 | antitermination protein | - |
| L6507_RS11750 (2430359) | 2430359..2431572 | + | 1214 | WP_136952279.1 | IS3 family transposase IS629 | Transposase |
| L6507_RS11755 (2431612) | 2431612..2432232 | + | 621 | Protein_2299 | antitermination protein | - |
| L6507_RS11760 (2432510) | 2432510..2432599 | - | 90 | WP_120795389.1 | hypothetical protein | - |
| L6507_RS11765 (2432654) | 2432654..2432866 | - | 213 | WP_000087756.1 | cold shock-like protein CspF | - |
| L6507_RS11770 (2433167) | 2433167..2433382 | + | 216 | WP_000066484.1 | cold shock-like protein CspB | - |
| L6507_RS11775 (2433746) | 2433746..2433916 | - | 171 | WP_211180497.1 | putative zinc-binding protein YnfU | - |
| L6507_RS11780 (2434136) | 2434136..2434351 | + | 216 | WP_000839590.1 | phage lysis protein EssD | - |
| L6507_RS11785 (2434356) | 2434356..2434667 | + | 312 | WP_000189916.1 | YdfR family protein | - |
| L6507_RS11790 (2434664) | 2434664..2435197 | + | 534 | WP_001092971.1 | lysozyme | - |
| L6507_RS11795 (2435194) | 2435194..2435691 | + | 498 | WP_001071769.1 | DUF2514 domain-containing protein | - |
| L6507_RS11800 (2436054) | 2436054..2436266 | + | 213 | WP_000066495.1 | cold shock protein CspI | - |
| L6507_RS11805 (2436277) | 2436277..2436465 | + | 189 | WP_071524604.1 | cold-shock protein | - |
| L6507_RS11810 (2436468) | 2436468..2436533 | + | 66 | WP_120795388.1 | small protein YnfR | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|