MGE detailed information
MGE type: Prophage MGE length: 56838 bp
Accession: NZ_CP091756 Location: 2407790..2464627 Organism: Escherichia coli strain LC-1302-2020 Replicon: chromosome
Accession: NZ_CP091756 Location: 2407790..2464627 Organism: Escherichia coli strain LC-1302-2020 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| L6507_RS11590 (2403689) | 2403689..2404909 | + | 1221 | WP_000225262.1 | DNA-binding transcriptional repressor Mlc | - |
| L6507_RS11595 (2405034) | 2405034..2405729 | + | 696 | WP_000919231.1 | dethiobiotin synthase | - |
| L6507_RS11600 (2405682) | 2405682..2406974 | - | 1293 | WP_001315626.1 | voltage-gated ClC-type chloride channel ClcB | - |
| L6507_RS11605 (2407133) | 2407133..2407747 | - | 615 | WP_000148710.1 | Tat proofreading chaperone DmsD | - |
| L6507_RS11610 (2407790) | 2407790..2408644 | - | 855 | WP_000526503.1 | dimethyl sulfoxide reductase anchor subunit family protein | - |
| L6507_RS11615 (2408646) | 2408646..2409263 | - | 618 | WP_000213028.1 | dimethylsulfoxide reductase subunit B | - |
| L6507_RS11620 (2409274) | 2409274..2411697 | - | 2424 | WP_072190333.1 | DmsA/YnfE/YnfF family dimethyl sulfoxide reductase | - |
| L6507_RS11625 (2411758) | 2411758..2414184 | - | 2427 | WP_021572830.1 | DmsA/YnfE/YnfF family dimethyl sulfoxide reductase | - |
| L6507_RS11630 (2414383) | 2414383..2414688 | - | 306 | WP_001300836.1 | DUF1161 domain-containing protein | - |
| L6507_RS11635 (2414796) | 2414796..2415506 | + | 711 | WP_001321287.1 | YnfC family lipoprotein | - |
| L6507_RS11640 (2415509) | 2415509..2416069 | - | 561 | WP_001138581.1 | spermidine N1-acetyltransferase | - |
| L6507_RS11645 (2416104) | 2416104..2416445 | - | 342 | WP_000705211.1 | DUF1283 family protein | - |
| L6507_RS11650 (2416580) | 2416580..2416906 | + | 327 | WP_000598292.1 | YnfA family protein | - |
| L6507_RS11655 (2417112) | 2417112..2418326 | + | 1215 | WP_001295394.1 | starvation-sensing protein RspA | - |
| L6507_RS11660 (2418338) | 2418338..2419330 | + | 993 | WP_021572829.1 | Zn-dependent oxidoreductase | - |
| L6507_RS11665 (2419357) | 2419357..2420970 | - | 1614 | WP_000080195.1 | IS66 family transposase ISEc23 | Transposase |
| L6507_RS11670 (2421001) | 2421001..2421351 | - | 351 | WP_000624722.1 | IS66 family transposase ISEc23 | Transposase |
| L6507_RS11675 (2421348) | 2421348..2421773 | - | 426 | WP_000422741.1 | IS66 family transposase ISEc23 | Transposase |
| L6507_RS11680 (2422085) | 2422085..2423365 | - | 1281 | WP_000876958.1 | Putative defective protein IntQ ; Integrase | Integrase |
| L6507_RS11685 (2423400) | 2423400..2423651 | - | 252 | WP_000005552.1 | excisionase family protein | - |
| L6507_RS11690 (2423724) | 2423724..2424464 | - | 741 | Protein_2286 | 3'-5' exoribonuclease | - |
| L6507_RS11700 (2426085) | 2426085..2426234 | + | 150 | WP_011443592.1 | protein YdfW | - |
| L6507_RS11705 (2426671) | 2426671..2427003 | - | 333 | WP_001301033.1 | FlxA-like family protein | - |
| L6507_RS11710 (2427206) | 2427206..2427511 | - | 306 | WP_001326990.1 | protein YdfV | - |
| L6507_RS11715 (2427536) | 2427536..2427775 | + | 240 | WP_000534858.1 | type II toxin-antitoxin system antitoxin RelB | Antitoxin Detail |
| L6507_RS11720 (2427775) | 2427775..2428062 | + | 288 | WP_000323025.1 | type II toxin-antitoxin system mRNA interferase RelE | Toxin Detail |
| L6507_RS11725 (2428134) | 2428134..2428289 | + | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | - |
| L6507_RS11730 (2428506) | 2428506..2428757 | + | 252 | WP_000980994.1 | protein Rem | - |
| L6507_RS11735 (2428824) | 2428824..2429102 | + | 279 | WP_032351280.1 | hypothetical protein | - |
| L6507_RS11740 (2429104) | 2429104..2430153 | + | 1050 | WP_001265199.1 | DUF968 domain-containing protein | - |
| L6507_RS11745 (2430167) | 2430167..2430304 | + | 138 | Protein_2297 | antitermination protein | - |
| L6507_RS11750 (2430359) | 2430359..2431572 | + | 1214 | WP_136952279.1 | IS3 family transposase IS629 | Transposase |
| L6507_RS11755 (2431612) | 2431612..2432232 | + | 621 | Protein_2299 | antitermination protein | - |
| L6507_RS11760 (2432510) | 2432510..2432599 | - | 90 | WP_120795389.1 | hypothetical protein | - |
| L6507_RS11765 (2432654) | 2432654..2432866 | - | 213 | WP_000087756.1 | cold shock-like protein CspF | - |
| L6507_RS11770 (2433167) | 2433167..2433382 | + | 216 | WP_000066484.1 | cold shock-like protein CspB | - |
| L6507_RS11775 (2433746) | 2433746..2433916 | - | 171 | WP_211180497.1 | putative zinc-binding protein YnfU | - |
| L6507_RS11780 (2434136) | 2434136..2434351 | + | 216 | WP_000839590.1 | phage lysis protein EssD | - |
| L6507_RS11785 (2434356) | 2434356..2434667 | + | 312 | WP_000189916.1 | YdfR family protein | - |
| L6507_RS11790 (2434664) | 2434664..2435197 | + | 534 | WP_001092971.1 | lysozyme | - |
| L6507_RS11795 (2435194) | 2435194..2435691 | + | 498 | WP_001071769.1 | DUF2514 domain-containing protein | - |
| L6507_RS11800 (2436054) | 2436054..2436266 | + | 213 | WP_000066495.1 | cold shock protein CspI | - |
| L6507_RS11805 (2436277) | 2436277..2436465 | + | 189 | WP_071524604.1 | cold-shock protein | - |
| L6507_RS11810 (2436468) | 2436468..2436533 | + | 66 | WP_120795388.1 | small protein YnfR | - |
| L6507_RS11815 (2436613) | 2436613..2436768 | + | 156 | WP_001309517.1 | protein YnfN | - |
| L6507_RS11820 (2436940) | 2436940..2437113 | + | 174 | WP_001019606.1 | addiction module toxin, GnsA/GnsB family | - |
| L6507_RS11825 (2437265) | 2437265..2437675 | - | 411 | WP_000373090.1 | DUF1398 domain-containing protein | - |
| L6507_RS11830 (2437733) | 2437733..2437966 | - | 234 | WP_001368374.1 | YlcI/YnfO family protein | - |
| L6507_RS11835 (2438355) | 2438355..2438900 | + | 546 | WP_000453587.1 | DNA-packaging protein | - |
| L6507_RS11840 (2438875) | 2438875..2440800 | + | 1926 | WP_001027259.1 | phage terminase large subunit family protein | - |
| L6507_RS11845 (2440797) | 2440797..2441003 | + | 207 | WP_000198149.1 | gpW family protein | - |
| L6507_RS11850 (2441000) | 2441000..2442601 | + | 1602 | WP_021572737.1 | phage portal protein | - |
| L6507_RS11855 (2442582) | 2442582..2443901 | + | 1320 | WP_001702225.1 | S49 family peptidase | - |
| L6507_RS11860 (2443911) | 2443911..2444243 | + | 333 | WP_001299443.1 | head decoration protein | - |
| L6507_RS11865 (2444298) | 2444298..2445323 | + | 1026 | WP_000063260.1 | major capsid protein | - |
| L6507_RS11870 (2445365) | 2445365..2445760 | + | 396 | WP_000158895.1 | DNA-packaging protein FI | - |
| L6507_RS11875 (2445772) | 2445772..2446125 | + | 354 | WP_000752996.1 | head-tail joining protein | - |
| L6507_RS11880 (2446137) | 2446137..2446715 | + | 579 | WP_000985116.1 | phage tail protein | - |
| L6507_RS11885 (2446712) | 2446712..2447107 | + | 396 | WP_000683105.1 | phage minor tail U family protein | - |
| L6507_RS11890 (2447115) | 2447115..2447855 | + | 741 | WP_001445656.1 | phage tail protein | - |
| L6507_RS11895 (2447871) | 2447871..2448293 | + | 423 | WP_000479143.1 | phage minor tail protein G | - |
| L6507_RS11900 (2448275) | 2448275..2448709 | + | 435 | WP_000459458.1 | phage tail assembly protein T | - |
| L6507_RS11905 (2448702) | 2448702..2451035 | + | 2334 | WP_241454018.1 | phage tail tape measure protein | - |
| L6507_RS11910 (2451032) | 2451032..2451361 | + | 330 | WP_001702228.1 | phage tail protein | - |
| L6507_RS11915 (2451361) | 2451361..2452059 | + | 699 | WP_001152639.1 | phage minor tail protein L | - |
| L6507_RS11920 (2452065) | 2452065..2452808 | + | 744 | WP_241454021.1 | C40 family peptidase | - |
| L6507_RS11925 (2452805) | 2452805..2453377 | + | 573 | WP_000847669.1 | tail assembly protein | - |
| L6507_RS11930 (2453438) | 2453438..2456935 | + | 3498 | WP_000515713.1 | host specificity protein J | - |
| L6507_RS11935 (2457006) | 2457006..2457605 | + | 600 | WP_001233090.1 | Outer membrane protein X | VF |
| L6507_RS11940 (2457670) | 2457670..2460744 | + | 3075 | WP_016230955.1 | phage tail protein | - |
| L6507_RS11945 (2460744) | 2460744..2461319 | + | 576 | WP_000885611.1 | tail fiber assembly protein | - |
| L6507_RS11950 (2461417) | 2461417..2462007 | - | 591 | WP_000078177.1 | Tn3 family transposase TnpR_ISSba14 | Transposase |
| L6507_RS11955 (2462324) | 2462324..2462557 | - | 234 | WP_000836768.1 | cold shock protein YdfK | - |
| L6507_RS11960 (2462626) | 2462626..2462739 | - | 114 | WP_120795384.1 | YnaM/YnfT family protein | - |
| L6507_RS11965 (2463260) | 2463260..2464627 | + | 1368 | Protein_2341 | MHS family MFS transporter | - |
| L6507_RS11970 (2464716) | 2464716..2466176 | + | 1461 | WP_000527809.1 | mannitol dehydrogenase family protein | - |
| L6507_RS11975 (2466211) | 2466211..2466414 | - | 204 | WP_000214712.1 | putative selenium delivery protein YdfZ | - |
| L6507_RS11980 (2466591) | 2466591..2467277 | - | 687 | WP_000215549.1 | DNA-binding transcriptional regulator rspR | - |
| L6507_RS11985 (2467366) | 2467366..2468112 | - | 747 | WP_000636571.1 | bifunctional NADP-dependent 3-hydroxy acid dehydrogenase/3-hydroxypropionate dehydrogenase YdfG | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|