MGE detailed information
MGE type: Prophage MGE length: 67648 bp
Accession: NZ_CP091704 Location: 2412527..2480174 Organism: Escherichia coli strain KGu016 Replicon: chromosome
Accession: NZ_CP091704 Location: 2412527..2480174 Organism: Escherichia coli strain KGu016 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| L6L59_RS11475 (2408427) | 2408427..2409647 | + | 1221 | WP_000225257.1 | DNA-binding transcriptional repressor Mlc | - |
| L6L59_RS11480 (2409772) | 2409772..2410467 | + | 696 | WP_000919226.1 | dethiobiotin synthase | - |
| L6L59_RS11485 (2410420) | 2410420..2411712 | - | 1293 | WP_071591524.1 | voltage-gated ClC-type chloride channel ClcB | - |
| L6L59_RS11490 (2411870) | 2411870..2412484 | - | 615 | WP_001551148.1 | Tat proofreading chaperone DmsD | - |
| L6L59_RS11495 (2412527) | 2412527..2413381 | - | 855 | WP_001551147.1 | dimethyl sulfoxide reductase anchor subunit family protein | - |
| L6L59_RS11500 (2413383) | 2413383..2414000 | - | 618 | WP_000213028.1 | dimethylsulfoxide reductase subunit B | - |
| L6L59_RS11505 (2414011) | 2414011..2416434 | - | 2424 | WP_072198879.1 | DmsA/YnfE/YnfF family dimethyl sulfoxide reductase | - |
| L6L59_RS11510 (2416495) | 2416495..2418921 | - | 2427 | WP_001551145.1 | DmsA/YnfE/YnfF family dimethyl sulfoxide reductase | - |
| L6L59_RS11515 (2419120) | 2419120..2419425 | - | 306 | WP_001295396.1 | DUF1161 domain-containing protein | - |
| L6L59_RS11520 (2419533) | 2419533..2420243 | + | 711 | WP_001445899.1 | YnfC family lipoprotein | - |
| L6L59_RS11525 (2420246) | 2420246..2420806 | - | 561 | WP_001138584.1 | spermidine N1-acetyltransferase | - |
| L6L59_RS11530 (2420841) | 2420841..2421182 | - | 342 | WP_000705205.1 | DUF1283 family protein | - |
| L6L59_RS11535 (2421317) | 2421317..2421643 | + | 327 | WP_001314753.1 | YnfA family protein | - |
| L6L59_RS11540 (2421849) | 2421849..2423063 | + | 1215 | WP_001295394.1 | starvation-sensing protein RspA | - |
| L6L59_RS11545 (2423075) | 2423075..2424094 | + | 1020 | WP_000836035.1 | Zn-dependent oxidoreductase | - |
| L6L59_RS11550 (2424282) | 2424282..2425562 | - | 1281 | WP_021523105.1 | Putative defective protein IntQ ; Integrase | Integrase |
| L6L59_RS11555 (2425597) | 2425597..2425848 | - | 252 | WP_000005552.1 | excisionase family protein | - |
| L6L59_RS11560 (2425921) | 2425921..2428392 | - | 2472 | WP_000048363.1 | exonuclease | - |
| L6L59_RS11565 (2428486) | 2428486..2428677 | - | 192 | WP_001083276.1 | lysis protein YdfD | - |
| L6L59_RS11570 (2428674) | 2428674..2428862 | - | 189 | WP_000854559.1 | cell division inhibition protein DicB | - |
| L6L59_RS26205 (2429823) | 2429823..2429924 | - | 102 | Protein_2272 | protein YdfB | - |
| L6L59_RS11580 (2429926) | 2429926..2430081 | - | 156 | WP_000379575.1 | DUF1391 family protein | - |
| L6L59_RS11585 (2430250) | 2430250..2430657 | - | 408 | WP_000381212.1 | helix-turn-helix domain-containing protein | - |
| L6L59_RS11590 (2430738) | 2430738..2430965 | + | 228 | WP_000921596.1 | Cro/CI family transcriptional regulator | - |
| L6L59_RS11595 (2430949) | 2430949..2431470 | + | 522 | WP_000705355.1 | toxin YdaT family protein | - |
| L6L59_RS11600 (2431451) | 2431451..2432416 | + | 966 | WP_000054487.1 | hypothetical protein | - |
| L6L59_RS11605 (2432457) | 2432457..2432855 | + | 399 | WP_001151242.1 | DUF977 family protein | - |
| L6L59_RS11610 (2433058) | 2433058..2433723 | + | 666 | WP_021523102.1 | epoxyqueuosine reductase QueH | - |
| L6L59_RS11615 (2433932) | 2433932..2434546 | + | 615 | WP_001265627.1 | hypothetical protein | - |
| L6L59_RS11620 (2434549) | 2434549..2435571 | + | 1023 | WP_000915483.1 | DUF4868 domain-containing protein | - |
| L6L59_RS11625 (2436076) | 2436076..2437098 | + | 1023 | Protein_2282 | ISNCY family transposase ISCARN112 | Transposase |
| L6L59_RS11630 (2437219) | 2437219..2437368 | + | 150 | WP_011443592.1 | ISNCY family transposase ISCARN112 | Transposase |
| L6L59_RS11635 (2437805) | 2437805..2437939 | - | 135 | Protein_2284 | hypothetical protein | - |
| L6L59_RS11640 (2437962) | 2437962..2438701 | + | 740 | Protein_2285 | IS3 family transposase IS629 | Transposase |
| L6L59_RS11645 (2439374) | 2439374..2440882 | + | 1509 | WP_001189123.1 | group II intron reverse transcriptase/maturase | - |
| L6L59_RS11650 (2440966) | 2440966..2441445 | + | 480 | Protein_2287 | IS3 family transposase IS629 | Transposase |
| L6L59_RS11655 (2441490) | 2441490..2441720 | - | 231 | Protein_2288 | FlxA-like family protein | - |
| L6L59_RS11660 (2441923) | 2441923..2442228 | - | 306 | WP_001326990.1 | protein YdfV | - |
| L6L59_RS11665 (2442253) | 2442253..2442492 | + | 240 | WP_000534858.1 | type II toxin-antitoxin system antitoxin RelB | Antitoxin Detail |
| L6L59_RS11670 (2442492) | 2442492..2442779 | + | 288 | WP_000323025.1 | type II toxin-antitoxin system mRNA interferase RelE | Toxin Detail |
| L6L59_RS11675 (2442851) | 2442851..2443006 | + | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | - |
| L6L59_RS11680 (2443223) | 2443223..2443474 | + | 252 | WP_000980994.1 | protein Rem | - |
| L6L59_RS11685 (2443541) | 2443541..2443819 | + | 279 | WP_012304870.1 | hypothetical protein | - |
| L6L59_RS11690 (2443821) | 2443821..2444870 | + | 1050 | WP_001265199.1 | DUF968 domain-containing protein | - |
| L6L59_RS11695 (2444884) | 2444884..2445636 | + | 753 | WP_001047135.1 | antitermination protein | - |
| L6L59_RS11700 (2445914) | 2445914..2446003 | - | 90 | WP_120795389.1 | hypothetical protein | - |
| L6L59_RS11705 (2446058) | 2446058..2446270 | - | 213 | WP_000087756.1 | cold shock-like protein CspF | - |
| L6L59_RS11710 (2446571) | 2446571..2446786 | + | 216 | WP_000066484.1 | cold shock-like protein CspB | - |
| L6L59_RS11715 (2447150) | 2447150..2447320 | - | 171 | WP_211180497.1 | putative zinc-binding protein YnfU | - |
| L6L59_RS11720 (2447540) | 2447540..2447755 | + | 216 | WP_000839590.1 | phage lysis protein EssD | - |
| L6L59_RS11725 (2447760) | 2447760..2448071 | + | 312 | WP_000189916.1 | YdfR family protein | - |
| L6L59_RS11730 (2448068) | 2448068..2448601 | + | 534 | WP_001092971.1 | lysozyme | - |
| L6L59_RS11735 (2448598) | 2448598..2449095 | + | 498 | WP_001071769.1 | DUF2514 domain-containing protein | - |
| L6L59_RS11740 (2449458) | 2449458..2449670 | + | 213 | WP_000066495.1 | cold shock protein CspI | - |
| L6L59_RS11745 (2449681) | 2449681..2449869 | + | 189 | WP_071524604.1 | cold-shock protein | - |
| L6L59_RS11750 (2449872) | 2449872..2449937 | + | 66 | WP_120795388.1 | small protein YnfR | - |
| L6L59_RS11755 (2449942) | 2449942..2450172 | + | 231 | WP_000720962.1 | protein YnfN | - |
| L6L59_RS11760 (2450344) | 2450344..2450517 | + | 174 | WP_001019606.1 | addiction module toxin, GnsA/GnsB family | - |
| L6L59_RS11765 (2450669) | 2450669..2451079 | - | 411 | WP_000373090.1 | DUF1398 domain-containing protein | - |
| L6L59_RS11770 (2451137) | 2451137..2451370 | - | 234 | WP_001368374.1 | YlcI/YnfO family protein | - |
| L6L59_RS11775 (2451759) | 2451759..2452304 | + | 546 | WP_000453587.1 | DNA-packaging protein | - |
| L6L59_RS11780 (2452279) | 2452279..2454204 | + | 1926 | WP_001027269.1 | phage terminase large subunit family protein | - |
| L6L59_RS11785 (2454201) | 2454201..2454407 | + | 207 | WP_000198149.1 | gpW family protein | - |
| L6L59_RS11790 (2454404) | 2454404..2456005 | + | 1602 | WP_001356819.1 | phage portal protein | - |
| L6L59_RS11795 (2455986) | 2455986..2457305 | + | 1320 | WP_020233915.1 | S49 family peptidase | - |
| L6L59_RS11800 (2457315) | 2457315..2457647 | + | 333 | WP_001708751.1 | head decoration protein | - |
| L6L59_RS11805 (2457702) | 2457702..2458727 | + | 1026 | WP_000063277.1 | major capsid protein | - |
| L6L59_RS11810 (2458769) | 2458769..2459167 | + | 399 | WP_020233914.1 | DNA-packaging protein FI | - |
| L6L59_RS11815 (2459179) | 2459179..2459532 | + | 354 | WP_000752979.1 | head-tail joining protein | - |
| L6L59_RS11820 (2459544) | 2459544..2460122 | + | 579 | WP_000975070.1 | phage tail protein | - |
| L6L59_RS11825 (2460119) | 2460119..2460514 | + | 396 | WP_000683128.1 | phage minor tail U family protein | - |
| L6L59_RS11830 (2460522) | 2460522..2461262 | + | 741 | WP_001349920.1 | phage tail protein | - |
| L6L59_RS11835 (2461278) | 2461278..2461700 | + | 423 | WP_000479153.1 | phage minor tail protein G | - |
| L6L59_RS11840 (2461682) | 2461682..2462116 | + | 435 | WP_000459457.1 | phage tail assembly protein T | - |
| L6L59_RS11845 (2462109) | 2462109..2464670 | + | 2562 | WP_032153656.1 | phage tail tape measure protein | - |
| L6L59_RS11850 (2464667) | 2464667..2464996 | + | 330 | WP_000847345.1 | phage tail protein | - |
| L6L59_RS11855 (2464996) | 2464996..2465694 | + | 699 | WP_001551186.1 | phage minor tail protein L | - |
| L6L59_RS11860 (2465700) | 2465700..2466443 | + | 744 | WP_032153655.1 | C40 family peptidase | - |
| L6L59_RS11865 (2466380) | 2466380..2466982 | + | 603 | WP_049286672.1 | tail assembly protein | - |
| L6L59_RS11870 (2467043) | 2467043..2470522 | + | 3480 | WP_021523093.1 | host specificity protein J | - |
| L6L59_RS11875 (2470590) | 2470590..2471189 | + | 600 | WP_001542091.1 | Outer membrane protein X | VF |
| L6L59_RS11880 (2471254) | 2471254..2473653 | + | 2400 | WP_032152843.1 | prophage tail fiber N-terminal domain-containing protein | - |
| L6L59_RS11885 (2473650) | 2473650..2473931 | + | 282 | WP_000654154.1 | hypothetical protein | - |
| L6L59_RS11890 (2473941) | 2473941..2474645 | + | 705 | WP_000235967.1 | tail fiber domain-containing protein | - |
| L6L59_RS11895 (2474656) | 2474656..2474949 | + | 294 | WP_000355609.1 | hypothetical protein | - |
| L6L59_RS11900 (2474969) | 2474969..2475079 | + | 111 | Protein_2337 | tail fiber assembly protein | - |
| L6L59_RS11905 (2475177) | 2475177..2475767 | - | 591 | WP_000086527.1 | Tn3 family transposase TnpR_ISSba14 | Transposase |
| L6L59_RS11910 (2476084) | 2476084..2476317 | - | 234 | WP_000836768.1 | cold shock protein YdfK | - |
| L6L59_RS11915 (2476386) | 2476386..2476499 | - | 114 | WP_120795384.1 | YnaM/YnfT family protein | - |
| L6L59_RS11920 (2477103) | 2477103..2478386 | + | 1284 | Protein_2341 | MHS family MFS transporter YdfJ | - |
| L6L59_RS11925 (2478475) | 2478475..2479935 | + | 1461 | WP_001551142.1 | mannitol dehydrogenase family protein | - |
| L6L59_RS11930 (2479971) | 2479971..2480174 | - | 204 | WP_000214712.1 | putative selenium delivery protein YdfZ | - |
| L6L59_RS11935 (2480351) | 2480351..2481037 | - | 687 | WP_000215553.1 | DNA-binding transcriptional regulator rspR | - |
| L6L59_RS11940 (2481126) | 2481126..2481872 | - | 747 | WP_000636571.1 | bifunctional NADP-dependent 3-hydroxy acid dehydrogenase/3-hydroxypropionate dehydrogenase YdfG | - |
| L6L59_RS11945 (2482009) | 2482009..2484054 | + | 2046 | WP_001445708.1 | peptidyl-dipeptidase Dcp | - |
| L6L59_RS11950 (2484099) | 2484099..2484179 | - | 81 | Protein_2347 | hypothetical protein | - |
| L6L59_RS11955 (2484419) | 2484419..2484811 | + | 393 | WP_000671729.1 | YdeI family stress tolerance OB fold protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|