MGE detailed information
MGE type: Conjugative plasmid MGE length: 89404 bp
Accession: NZ_CP091675 Location: 1..89404 Organism: Escherichia coli strain KKo009 Replicon: plasmid pKKo009_2
Accession: NZ_CP091675 Location: 1..89404 Organism: Escherichia coli strain KKo009 Replicon: plasmid pKKo009_2
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| L6L68_RS24685 (452) | 452..1270 | - | 819 | WP_000646097.1 | hypothetical protein | VF |
| L6L68_RS24690 (1267) | 1267..1725 | - | 459 | WP_001079808.1 | hypothetical protein | VF |
| L6L68_RS24695 (2119) | 2119..2703 | - | 585 | WP_000977522.1 | histidine phosphatase family protein | - |
| L6L68_RS24700 (2763) | 2763..3965 | - | 1203 | WP_000976353.1 | conjugal transfer protein TraF | - |
| L6L68_RS24705 (4051) | 4051..4875 | - | 825 | WP_001238932.1 | conjugal transfer protein TraE | - |
| L6L68_RS24710 (5026) | 5026..6180 | - | 1155 | WP_001139955.1 | site-specific integrase | - |
| L6L68_RS24715 (6179) | 6179..6532 | + | 354 | WP_001393368.1 | hypothetical protein | - |
| L6L68_RS24720 (7154) | 7154..8563 | - | 1410 | WP_240729771.1 | hypothetical protein | VF |
| L6L68_RS24725 (8563) | 8563..9219 | - | 657 | WP_001193553.1 | hypothetical protein | VF |
| L6L68_RS24730 (9204) | 9204..9764 | - | 561 | WP_000014116.1 | hypothetical protein | VF |
| L6L68_RS24735 (9774) | 9774..10388 | - | 615 | WP_001542527.1 | hypothetical protein | VF |
| L6L68_RS24740 (10406) | 10406..11503 | - | 1098 | WP_001492931.1 | Toxin coregulated pilus biosynthesis protein E | VF |
| L6L68_RS24745 (11516) | 11516..13069 | - | 1554 | WP_001492932.1 | Toxin coregulated pilus biosynthesis protein T | VF |
| L6L68_RS24750 (13080) | 13080..13532 | - | 453 | WP_012783945.1 | hypothetical protein | VF |
| L6L68_RS24755 (13519) | 13519..14814 | - | 1296 | WP_012783946.1 | type 4b pilus protein PilO2 | - |
| L6L68_RS24760 (14807) | 14807..16489 | - | 1683 | WP_000748143.1 | Outer membrane lipoprotein BfpB | VF |
| L6L68_RS24765 (16503) | 16503..16940 | - | 438 | WP_000539807.1 | hypothetical protein | VF |
| L6L68_RS24770 (16940) | 16940..18007 | - | 1068 | WP_012783947.1 | hypothetical protein | VF |
| L6L68_RS24775 (18631) | 18631..18927 | - | 297 | WP_000494780.1 | hypothetical protein | - |
| L6L68_RS24780 (19094) | 19094..19348 | - | 255 | WP_001136187.1 | PilI type IV pilus biogenesis protein | - |
| L6L68_RS24785 (19510) | 19510..20061 | - | 552 | WP_000744644.1 | hypothetical protein | - |
| L6L68_RS24790 (20234) | 20234..20917 | - | 684 | WP_000213859.1 | conjugal transfer protein TraC | - |
| L6L68_RS24795 (21171) | 21171..21704 | - | 534 | WP_001303319.1 | transcription termination/antitermination NusG family protein | - |
| L6L68_RS24800 (22146) | 22146..22433 | - | 288 | WP_000074855.1 | conjugal transfer protein TraA | - |
| L6L68_RS24805 (22471) | 22471..22629 | - | 159 | Protein_25 | ash family protein | - |
| L6L68_RS24810 (23587) | 23587..24618 | + | 1032 | WP_024176529.1 | plasmid replication initiator RepA | - |
| L6L68_RS24815 (25315) | 25315..25455 | + | 141 | WP_032072206.1 | hypothetical protein | - |
| L6L68_RS24820 (25688) | 25688..26197 | - | 510 | WP_012783913.1 | hypothetical protein | - |
| L6L68_RS24825 (26253) | 26253..26855 | - | 603 | WP_001703912.1 | ProQ/FINO family protein | - |
| L6L68_RS24830 (27410) | 27410..28699 | + | 1290 | WP_234876044.1 | IS1380 family transposase ISEcp1 | Transposase |
| L6L68_RS24840 (29704) | 29704..30579 | + | 876 | WP_015387340.1 | Beta-lactamase CTX-M-1 | ARG |
| L6L68_RS24845 (30626) | 30626..30970 | - | 345 | Protein_33 | WbuC family cupin fold metalloprotein | - |
| L6L68_RS24850 (30913) | 30913..32307 | + | 1395 | WP_023150520.1 | protein YagA | - |
| L6L68_RS24855 (32838) | 32838..33140 | - | 303 | WP_001245884.1 | hypothetical protein | - |
| L6L68_RS24860 (33137) | 33137..33763 | - | 627 | WP_000587689.1 | ParA family plasmid-partitioning AAA ATPase | - |
| L6L68_RS24865 (33967) | 33967..35238 | - | 1272 | WP_001703910.1 | Y-family DNA polymerase | - |
| L6L68_RS24870 (35238) | 35238..35675 | - | 438 | WP_000109071.1 | translesion error-prone DNA polymerase V autoproteolytic subunit | - |
| L6L68_RS24875 (35672) | 35672..35920 | - | 249 | WP_000618110.1 | DinI-like family protein | - |
| L6L68_RS24880 (36338) | 36338..37240 | + | 903 | WP_001739825.1 | DUF1281 domain-containing protein | - |
| L6L68_RS24885 (37244) | 37244..37330 | + | 87 | Protein_41 | hypothetical protein | - |
| L6L68_RS24890 (37335) | 37335..37670 | - | 336 | WP_001340323.1 | hypothetical protein | - |
| L6L68_RS24895 (38008) | 38008..38988 | + | 981 | WP_012783921.1 | plasmid segregation protein ParM | - |
| L6L68_RS24900 (38991) | 38991..39413 | + | 423 | WP_000774832.1 | plasmid partitioning/stability family protein | - |
| L6L68_RS24905 (39417) | 39417..39728 | + | 312 | WP_033863049.1 | hypothetical protein | - |
| L6L68_RS24910 (39804) | 39804..40487 | + | 684 | WP_000086127.1 | DNA methylase | - |
| L6L68_RS24915 (40488) | 40488..40709 | + | 222 | WP_001104873.1 | hypothetical protein | - |
| L6L68_RS24920 (40639) | 40639..41157 | + | 519 | WP_223350510.1 | DUF1380 family protein | - |
| L6L68_RS24925 (41202) | 41202..41972 | + | 771 | WP_012783922.1 | hypothetical protein | - |
| L6L68_RS24930 (42385) | 42385..42810 | + | 426 | WP_001198889.1 | antirestriction protein | - |
| L6L68_RS24935 (42857) | 42857..43279 | + | 423 | WP_000271703.1 | DUF1380 family protein | - |
| L6L68_RS24940 (43276) | 43276..43467 | + | 192 | WP_001027516.1 | hypothetical protein | - |
| L6L68_RS24945 (43605) | 43605..43868 | + | 264 | WP_158213465.1 | hypothetical protein | - |
| L6L68_RS24950 (44252) | 44252..44779 | + | 528 | WP_012783926.1 | single-stranded DNA-binding protein | - |
| L6L68_RS24955 (44837) | 44837..45070 | + | 234 | WP_015508350.1 | DUF905 domain-containing protein | - |
| L6L68_RS24960 (45129) | 45129..47087 | + | 1959 | WP_063267868.1 | ParB/RepB/Spo0J family partition protein | - |
| L6L68_RS24965 (47140) | 47140..47574 | + | 435 | WP_001402001.1 | conjugation system SOS inhibitor PsiB | - |
| L6L68_RS24970 (47571) | 47571..48290 | + | 720 | WP_012783927.1 | plasmid SOS inhibition protein A | - |
| L6L68_RS24975 (48287) | 48287..48883 | + | 597 | WP_000977995.1 | hypothetical protein | - |
| L6L68_RS24980 (49345) | 49345..49845 | + | 501 | WP_000117626.1 | antirestriction protein ArdA | - |
| L6L68_RS24985 (50574) | 50574..51008 | + | 435 | WP_000218858.1 | hypothetical protein | - |
| L6L68_RS24990 (51102) | 51102..51368 | + | 267 | WP_000804663.1 | hypothetical protein | - |
| L6L68_RS24995 (51762) | 51762..53303 | + | 1542 | WP_001298859.1 | IS21 family transposase ISEc12 | Transposase |
| L6L68_RS25000 (53318) | 53318..54064 | + | 747 | WP_001016257.1 | IS21 family transposase ISEc12 | Transposase |
| L6L68_RS25005 (54168) | 54168..54521 | + | 354 | WP_042002699.1 | hypothetical protein | - |
| L6L68_RS25010 (54518) | 54518..55420 | + | 903 | WP_023150544.1 | Recombination-promoting nuclease RpnA | VF |
| L6L68_RS25015 (55482) | 55482..55688 | + | 207 | WP_000150314.1 | hypothetical protein | VF |
| L6L68_RS25020 (55719) | 55719..55970 | - | 252 | WP_000148285.1 | helix-turn-helix transcriptional regulator | - |
| L6L68_RS25025 (56550) | 56550..57398 | + | 849 | WP_012783929.1 | DUF4942 domain-containing protein | - |
| L6L68_RS25030 (57484) | 57484..57819 | - | 336 | WP_000157082.1 | molybdopterin-guanine dinucleotide biosynthesis protein MobC | - |
| L6L68_RS25035 (58053) | 58053..58385 | + | 333 | WP_001283947.1 | IncI1-type relaxosome accessory protein NikA | - |
| L6L68_RS25040 (58396) | 58396..61095 | + | 2700 | WP_012783930.1 | Protein TraI | Relaxase |
| L6L68_RS25045 (61132) | 61132..63423 | - | 2292 | WP_012783931.1 | F-type conjugative transfer protein TrbC | - |
| L6L68_RS25050 (63416) | 63416..64486 | - | 1071 | WP_012783932.1 | IncI1-type conjugal transfer protein TrbB | - |
| L6L68_RS25055 (64505) | 64505..65713 | - | 1209 | WP_001703845.1 | IncI1-type conjugal transfer protein TrbA | - |
| - (65893) | 65893..65950 | - | 58 | NuclAT_1 | - | - |
| - (65893) | 65893..65950 | - | 58 | NuclAT_1 | - | - |
| - (65893) | 65893..65950 | - | 58 | NuclAT_1 | - | - |
| - (65893) | 65893..65950 | - | 58 | NuclAT_1 | - | - |
| L6L68_RS25060 (66020) | 66020..66799 | - | 780 | WP_275450201.1 | protein FinQ | - |
| - (67314) | 67314..67374 | - | 61 | NuclAT_0 | - | Antitoxin Detail |
| - (67314) | 67314..67374 | - | 61 | NuclAT_0 | - | Antitoxin Detail |
| - (67314) | 67314..67374 | - | 61 | NuclAT_0 | - | Antitoxin Detail |
| - (67314) | 67314..67374 | - | 61 | NuclAT_0 | - | Antitoxin Detail |
| L6L68_RS25065 (67426) | 67426..67578 | + | 153 | WP_001387489.1 | Hok/Gef family protein | Toxin Detail |
| L6L68_RS25070 (67650) | 67650..67901 | - | 252 | WP_001291964.1 | hypothetical protein | - |
| L6L68_RS25345 (68402) | 68402..68497 | + | 96 | WP_000609148.1 | DinQ-like type I toxin DqlB | - |
| L6L68_RS25080 (68562) | 68562..68738 | - | 177 | WP_001054900.1 | hypothetical protein | - |
| L6L68_RS25085 (69130) | 69130..69339 | + | 210 | WP_000062603.1 | HEAT repeat domain-containing protein | - |
| L6L68_RS25090 (69411) | 69411..70073 | - | 663 | WP_012783935.1 | plasmid IncI1-type surface exclusion protein ExcA | - |
| L6L68_RS25095 (70144) | 70144..72312 | - | 2169 | WP_015508354.1 | DotA/TraY family protein | - |
| L6L68_RS25100 (72409) | 72409..72993 | - | 585 | WP_012783937.1 | conjugal transfer protein TraX | - |
| L6L68_RS25105 (73022) | 73022..74224 | - | 1203 | WP_012783938.1 | IncI1-type conjugal transfer protein TraW | - |
| L6L68_RS25110 (74191) | 74191..74805 | - | 615 | WP_000337394.1 | IncI1-type conjugal transfer protein TraV | - |
| L6L68_RS25115 (74805) | 74805..77849 | - | 3045 | WP_012783939.1 | IncI1-type conjugal transfer protein TraU | - |
| L6L68_RS25120 (77939) | 77939..78739 | - | 801 | WP_001164788.1 | IncI1-type conjugal transfer protein TraT | - |
| L6L68_RS25125 (78723) | 78723..78911 | - | 189 | WP_001277255.1 | putative conjugal transfer protein TraS | - |
| L6L68_RS25130 (78975) | 78975..79379 | - | 405 | WP_000086965.1 | IncI1-type conjugal transfer protein TraR | - |
| L6L68_RS25135 (79430) | 79430..79957 | - | 528 | WP_001055569.1 | conjugal transfer protein TraQ | - |
| L6L68_RS25140 (79957) | 79957..80661 | - | 705 | WP_001493811.1 | IncI1-type conjugal transfer protein TraP | - |
| L6L68_RS25145 (80661) | 80661..81950 | - | 1290 | WP_011264042.1 | conjugal transfer protein TraO | - |
| L6L68_RS25150 (81953) | 81953..82936 | - | 984 | WP_001191880.1 | hypothetical protein | VF |
| L6L68_RS25155 (82947) | 82947..83639 | - | 693 | WP_000138552.1 | DotI/IcmL family type IV secretion protein | - |
| L6L68_RS25160 (83636) | 83636..83983 | - | 348 | WP_001055900.1 | conjugal transfer protein | - |
| L6L68_RS25165 (84001) | 84001..87768 | - | 3768 | WP_012783940.1 | DUF5710 domain-containing protein | - |
| L6L68_RS25170 (87858) | 87858..88409 | - | 552 | WP_012783942.1 | Phospholipase D | VF |
| L6L68_RS25175 (88424) | 88424..88714 | - | 291 | WP_001314267.1 | hypothetical protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|