MGE detailed information
MGE type: Prophage MGE length: 51610 bp
Accession: NZ_CP091534 Location: 2408240..2459849 Organism: Escherichia coli strain 537-20 Replicon: chromosome
Accession: NZ_CP091534 Location: 2408240..2459849 Organism: Escherichia coli strain 537-20 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| L6D13_RS11545 (2403491) | 2403491..2404201 | + | 711 | WP_001321287.1 | YnfC family lipoprotein | - |
| L6D13_RS11550 (2404204) | 2404204..2404764 | - | 561 | WP_001138581.1 | spermidine N1-acetyltransferase | - |
| L6D13_RS11555 (2404799) | 2404799..2405140 | - | 342 | WP_000705211.1 | DUF1283 family protein | - |
| L6D13_RS11560 (2405275) | 2405275..2405601 | + | 327 | WP_000598292.1 | YnfA family protein | - |
| L6D13_RS11565 (2405807) | 2405807..2407021 | + | 1215 | WP_001295394.1 | starvation-sensing protein RspA | - |
| L6D13_RS11570 (2407033) | 2407033..2408052 | + | 1020 | WP_000836079.1 | Zn-dependent oxidoreductase | - |
| L6D13_RS11575 (2408240) | 2408240..2409520 | - | 1281 | WP_000876958.1 | Putative defective protein IntQ ; Integrase | Integrase |
| L6D13_RS11580 (2409555) | 2409555..2409806 | - | 252 | WP_000005552.1 | excisionase family protein | - |
| L6D13_RS11585 (2409879) | 2409879..2412350 | - | 2472 | WP_000048342.1 | exonuclease | - |
| L6D13_RS11590 (2412443) | 2412443..2412634 | - | 192 | WP_001083297.1 | lysis protein YdfD | - |
| L6D13_RS11595 (2412631) | 2412631..2412819 | - | 189 | WP_000854559.1 | cell division inhibition protein DicB | - |
| L6D13_RS11600 (2413387) | 2413387..2413605 | - | 219 | WP_001171942.1 | protein YdfC | - |
| L6D13_RS24750 (2413635) | 2413635..2413763 | - | 129 | WP_000344964.1 | protein YdfB | - |
| L6D13_RS11605 (2413765) | 2413765..2413920 | - | 156 | WP_000379575.1 | DUF1391 family protein | - |
| L6D13_RS11610 (2414087) | 2414087..2414494 | - | 408 | WP_096934219.1 | DNA-binding transcriptional dual regulator DicA | - |
| L6D13_RS11615 (2414578) | 2414578..2414808 | + | 231 | WP_000920568.1 | dicB transcriptional regulator DicC | - |
| L6D13_RS11620 (2414792) | 2414792..2415313 | + | 522 | WP_000705358.1 | toxin YdaT family protein | - |
| L6D13_RS11625 (2415294) | 2415294..2416259 | + | 966 | WP_000054512.1 | hypothetical protein | - |
| L6D13_RS11630 (2416300) | 2416300..2416722 | + | 423 | WP_001151262.1 | DUF977 family protein | - |
| L6D13_RS11635 (2416719) | 2416719..2417208 | + | 490 | Protein_2283 | class I SAM-dependent methyltransferase | - |
| L6D13_RS11640 (2417686) | 2417686..2418107 | + | 422 | Protein_2284 | hypothetical protein | - |
| L6D13_RS11645 (2418763) | 2418763..2419785 | + | 1023 | Protein_2285 | ISNCY family transposase ISCARN112 | Transposase |
| L6D13_RS11650 (2419906) | 2419906..2420055 | + | 150 | WP_011443592.1 | ISNCY family transposase ISCARN112 | Transposase |
| L6D13_RS11655 (2420492) | 2420492..2420824 | - | 333 | WP_001301033.1 | FlxA-like family protein | - |
| L6D13_RS11660 (2421027) | 2421027..2421332 | - | 306 | WP_001326990.1 | protein YdfV | - |
| L6D13_RS11665 (2421357) | 2421357..2421596 | + | 240 | WP_000534858.1 | type II toxin-antitoxin system antitoxin RelB | Antitoxin Detail |
| L6D13_RS11670 (2421596) | 2421596..2421883 | + | 288 | WP_000323025.1 | type II toxin-antitoxin system mRNA interferase RelE | Toxin Detail |
| L6D13_RS11675 (2421955) | 2421955..2422110 | + | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | - |
| L6D13_RS11680 (2422327) | 2422327..2422578 | + | 252 | WP_000980994.1 | protein Rem | - |
| L6D13_RS11685 (2422645) | 2422645..2422923 | + | 279 | WP_012304870.1 | hypothetical protein | - |
| L6D13_RS11690 (2422925) | 2422925..2423974 | + | 1050 | WP_001265198.1 | DUF968 domain-containing protein | - |
| L6D13_RS11695 (2423988) | 2423988..2424740 | + | 753 | WP_001047135.1 | antitermination protein | - |
| L6D13_RS11700 (2425018) | 2425018..2425107 | - | 90 | WP_120795389.1 | hypothetical protein | - |
| L6D13_RS11705 (2425162) | 2425162..2425374 | - | 213 | WP_000087756.1 | cold shock-like protein CspF | - |
| L6D13_RS11710 (2425675) | 2425675..2425890 | + | 216 | WP_000066484.1 | cold shock-like protein CspB | - |
| L6D13_RS11715 (2426254) | 2426254..2426424 | - | 171 | WP_211180497.1 | putative zinc-binding protein YnfU | - |
| L6D13_RS11720 (2426644) | 2426644..2426859 | + | 216 | WP_000839590.1 | phage lysis protein EssD | - |
| L6D13_RS11725 (2426864) | 2426864..2427175 | + | 312 | WP_000189916.1 | YdfR family protein | - |
| L6D13_RS11730 (2427172) | 2427172..2427705 | + | 534 | WP_001092971.1 | lysozyme | - |
| L6D13_RS11735 (2427702) | 2427702..2428199 | + | 498 | WP_001071769.1 | DUF2514 domain-containing protein | - |
| L6D13_RS11740 (2428564) | 2428564..2428776 | + | 213 | WP_000066495.1 | cold shock protein CspI | - |
| L6D13_RS11745 (2428787) | 2428787..2428975 | + | 189 | WP_071524604.1 | cold-shock protein | - |
| L6D13_RS11750 (2428978) | 2428978..2429043 | + | 66 | WP_120795388.1 | small protein YnfR | - |
| L6D13_RS11755 (2429048) | 2429048..2429278 | + | 231 | WP_000720962.1 | protein YnfN | - |
| L6D13_RS11760 (2429450) | 2429450..2429622 | + | 173 | Protein_2308 | addiction module toxin, GnsA/GnsB family | - |
| L6D13_RS11765 (2429774) | 2429774..2430183 | - | 410 | Protein_2309 | DUF1398 domain-containing protein | - |
| L6D13_RS11770 (2430241) | 2430241..2430474 | - | 234 | WP_001368374.1 | YlcI/YnfO family protein | - |
| L6D13_RS11775 (2430863) | 2430863..2431408 | + | 546 | WP_096934431.1 | DNA-packaging protein | - |
| L6D13_RS11780 (2431383) | 2431383..2433308 | + | 1926 | WP_115188536.1 | phage terminase large subunit family protein | - |
| L6D13_RS11785 (2433305) | 2433305..2433511 | + | 207 | WP_000198149.1 | gpW family protein | - |
| L6D13_RS11790 (2433508) | 2433508..2435109 | + | 1602 | WP_001345555.1 | phage portal protein | - |
| L6D13_RS11795 (2435090) | 2435090..2436409 | + | 1320 | WP_236932577.1 | S49 family peptidase | - |
| L6D13_RS11800 (2436419) | 2436419..2436751 | + | 333 | WP_001513196.1 | head decoration protein | - |
| L6D13_RS11805 (2436807) | 2436807..2437832 | + | 1026 | WP_094319852.1 | major capsid protein | - |
| L6D13_RS11810 (2437874) | 2437874..2438272 | + | 399 | WP_032178303.1 | DNA-packaging protein FI | - |
| L6D13_RS11815 (2438284) | 2438284..2438637 | + | 354 | WP_000752996.1 | head-tail joining protein | - |
| L6D13_RS11820 (2438649) | 2438649..2439227 | + | 579 | WP_000975065.1 | phage tail protein | - |
| L6D13_RS11825 (2439224) | 2439224..2439619 | + | 396 | WP_000683105.1 | phage minor tail U family protein | - |
| L6D13_RS11830 (2439627) | 2439627..2440367 | + | 741 | WP_001358372.1 | phage tail protein | - |
| L6D13_RS11835 (2440383) | 2440383..2440805 | + | 423 | WP_000479153.1 | phage minor tail protein G | - |
| L6D13_RS11840 (2440787) | 2440787..2441221 | + | 435 | WP_000459457.1 | phage tail assembly protein T | - |
| L6D13_RS11845 (2441214) | 2441214..2443775 | + | 2562 | WP_053292699.1 | phage tail tape measure protein | - |
| L6D13_RS11850 (2443772) | 2443772..2444101 | + | 330 | WP_000847351.1 | phage tail protein | - |
| L6D13_RS11855 (2444101) | 2444101..2444799 | + | 699 | WP_001152612.1 | phage minor tail protein L | - |
| L6D13_RS11860 (2444805) | 2444805..2445548 | + | 744 | WP_001484131.1 | C40 family peptidase | - |
| L6D13_RS11865 (2445485) | 2445485..2446087 | + | 603 | WP_000090849.1 | tail assembly protein | - |
| L6D13_RS11870 (2446148) | 2446148..2449627 | + | 3480 | WP_236932578.1 | host specificity protein J | - |
| L6D13_RS11875 (2449695) | 2449695..2450294 | + | 600 | WP_053292719.1 | Outer membrane protein X | VF |
| L6D13_RS11880 (2450359) | 2450359..2453316 | + | 2958 | WP_236932579.1 | prophage tail fiber N-terminal domain-containing protein | - |
| L6D13_RS11885 (2453316) | 2453316..2453891 | + | 576 | WP_000885616.1 | tail fiber assembly protein | - |
| L6D13_RS11890 (2453989) | 2453989..2454579 | - | 591 | WP_000086514.1 | Tn3 family transposase TnpR_ISSba14 | Transposase |
| L6D13_RS11895 (2454896) | 2454896..2455129 | - | 234 | WP_000836768.1 | cold shock protein YdfK | - |
| L6D13_RS11900 (2455198) | 2455198..2455311 | - | 114 | WP_120795384.1 | YnaM/YnfT family protein | - |
| L6D13_RS11905 (2455914) | 2455914..2457197 | + | 1284 | Protein_2337 | MHS family MFS transporter YdfJ | - |
| L6D13_RS11910 (2457286) | 2457286..2458746 | + | 1461 | WP_096934369.1 | mannitol dehydrogenase family protein | - |
| L6D13_RS11915 (2458782) | 2458782..2458985 | - | 204 | WP_000214712.1 | putative selenium delivery protein YdfZ | - |
| L6D13_RS11920 (2459163) | 2459163..2459849 | - | 687 | WP_000215549.1 | DNA-binding transcriptional regulator rspR | - |
| L6D13_RS11925 (2459938) | 2459938..2460684 | - | 747 | WP_000636571.1 | bifunctional NADP-dependent 3-hydroxy acid dehydrogenase/3-hydroxypropionate dehydrogenase YdfG | - |
| L6D13_RS11930 (2460821) | 2460821..2462866 | + | 2046 | WP_096934368.1 | peptidyl-dipeptidase Dcp | - |
| L6D13_RS11935 (2462911) | 2462911..2463429 | - | 519 | WP_236932580.1 | 2-oxo-tetronate isomerase | - |
| L6D13_RS11940 (2463705) | 2463705..2464097 | + | 393 | WP_000671731.1 | YdeI family stress tolerance OB fold protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|