MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 88634 bp
Accession: NZ_CP091311 Location: 4245783..4334416 Organism: Pseudomonas juntendi strain 18091276 Replicon: chromosome
Accession: NZ_CP091311 Location: 4245783..4334416 Organism: Pseudomonas juntendi strain 18091276 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| L2Y89_RS19980 (L2Y89_19980) | 4241522..4242328 | - | 807 | WP_009684065.1 | ABC transporter permease | - |
| L2Y89_RS19985 (L2Y89_19985) | 4242328..4243248 | - | 921 | WP_009684064.1 | ABC transporter permease | - |
| L2Y89_RS19990 (L2Y89_19990) | 4243264..4244382 | - | 1119 | WP_009684063.1 | ABC transporter ATP-binding protein | - |
| L2Y89_RS19995 (L2Y89_19995) | 4244604..4245494 | + | 891 | WP_009684062.1 | LysR substrate-binding domain-containing protein | - |
| L2Y89_RS20000 (L2Y89_20000) | 4245952..4246839 | + | 888 | WP_055985452.1 | ParA family protein | - |
| L2Y89_RS20005 (L2Y89_20005) | 4246832..4247584 | + | 753 | WP_023660690.1 | hypothetical protein | - |
| L2Y89_RS20010 (L2Y89_20010) | 4247581..4247823 | + | 243 | WP_023660691.1 | hypothetical protein | - |
| L2Y89_RS20015 (L2Y89_20015) | 4247823..4248521 | + | 699 | WP_031324260.1 | DUF2786 domain-containing protein | - |
| L2Y89_RS20020 (L2Y89_20020) | 4248518..4249864 | + | 1347 | WP_237144305.1 | replicative DNA helicase | - |
| L2Y89_RS20025 (L2Y89_20025) | 4250039..4250566 | + | 528 | WP_023660694.1 | hypothetical protein | - |
| L2Y89_RS20030 (L2Y89_20030) | 4250559..4250792 | + | 234 | WP_023660695.1 | hypothetical protein | - |
| L2Y89_RS20035 (L2Y89_20035) | 4250792..4251796 | + | 1005 | WP_023660696.1 | nucleoid-associated protein YejK | - |
| L2Y89_RS20040 (L2Y89_20040) | 4251807..4252151 | + | 345 | WP_023660697.1 | Arc family DNA-binding protein | - |
| L2Y89_RS20045 (L2Y89_20045) | 4252153..4253859 | + | 1707 | WP_023660698.1 | ParB family protein | - |
| L2Y89_RS20050 (L2Y89_20050) | 4253892..4254587 | + | 696 | WP_023660699.1 | DUF2857 domain-containing protein | - |
| L2Y89_RS20055 (L2Y89_20055) | 4254584..4255885 | + | 1302 | WP_023660700.1 | STY4528 family pathogenicity island replication protein | - |
| L2Y89_RS20060 (L2Y89_20060) | 4255878..4256600 | + | 723 | WP_055985449.1 | hypothetical protein | VF |
| L2Y89_RS20065 (L2Y89_20065) | 4257435..4258160 | + | 726 | WP_023660701.1 | TIGR03761 family integrating conjugative element protein | - |
| L2Y89_RS20070 (L2Y89_20070) | 4258157..4258702 | + | 546 | WP_023660702.1 | DUF3158 family protein | - |
| L2Y89_RS20075 (L2Y89_20075) | 4258717..4259223 | + | 507 | WP_023660703.1 | single-stranded DNA-binding protein | - |
| L2Y89_RS20080 (L2Y89_20080) | 4259422..4259808 | + | 387 | WP_023660704.1 | hypothetical protein | - |
| L2Y89_RS20085 (L2Y89_20085) | 4260226..4260423 | + | 198 | WP_023660706.1 | CrpP family ICE-associated protein | - |
| L2Y89_RS20090 (L2Y89_20090) | 4260544..4262454 | + | 1911 | WP_023660707.1 | DNA topoisomerase | - |
| L2Y89_RS20095 (L2Y89_20095) | 4262592..4262894 | + | 303 | WP_023660708.1 | hypothetical protein | - |
| L2Y89_RS20100 (L2Y89_20100) | 4262891..4264858 | + | 1968 | WP_023660709.1 | DEAD/DEAH box helicase | - |
| L2Y89_RS20105 (L2Y89_20105) | 4264848..4265522 | - | 675 | WP_023660710.1 | hypothetical protein | - |
| L2Y89_RS20110 (L2Y89_20110) | 4265699..4266832 | + | 1134 | WP_031324267.1 | hypothetical protein | VF |
| L2Y89_RS20115 (L2Y89_20115) | 4266829..4268649 | + | 1821 | WP_023660712.1 | hypothetical protein | VF |
| L2Y89_RS20120 (L2Y89_20120) | 4268660..4269988 | + | 1329 | WP_031324269.1 | type 4b pilus protein PilO2 | - |
| L2Y89_RS20125 (L2Y89_20125) | 4269978..4270535 | + | 558 | WP_023660714.1 | type IV pilus biogenesis protein PilP | - |
| L2Y89_RS20130 (L2Y89_20130) | 4270757..4272100 | + | 1344 | WP_225624741.1 | hypothetical protein | VF |
| L2Y89_RS20135 (L2Y89_20135) | 4272093..4273259 | + | 1167 | WP_023660716.1 | hypothetical protein | VF |
| L2Y89_RS20140 (L2Y89_20140) | 4273283..4273798 | + | 516 | WP_023660717.1 | hypothetical protein | VF |
| L2Y89_RS20145 (L2Y89_20145) | 4273810..4274751 | + | 942 | WP_023660718.1 | ATPase, T2SS/T4P/T4SS family | - |
| L2Y89_RS20150 (L2Y89_20150) | 4274789..4276027 | + | 1239 | WP_225624754.1 | hypothetical protein | VF |
| L2Y89_RS20155 (L2Y89_20155) | 4276156..4276809 | + | 654 | WP_023660720.1 | hypothetical protein | - |
| L2Y89_RS20160 (L2Y89_20160) | 4276908..4277348 | + | 441 | WP_023660721.1 | type IV pilus biogenesis protein PilM | - |
| L2Y89_RS20165 (L2Y89_20165) | 4278243..4278593 | + | 351 | WP_051564724.1 | hypothetical protein | - |
| L2Y89_RS20170 (L2Y89_20170) | 4278665..4278841 | + | 177 | WP_023629571.1 | hypothetical protein | - |
| L2Y89_RS28375 | 4278843..4278968 | + | 126 | WP_023629570.1 | hypothetical protein | - |
| L2Y89_RS20175 (L2Y89_20175) | 4279293..4279865 | + | 573 | WP_028700176.1 | STY4534 family ICE replication protein | - |
| L2Y89_RS20180 (L2Y89_20180) | 4279919..4280077 | + | 159 | WP_023629568.1 | hypothetical protein | - |
| L2Y89_RS20185 (L2Y89_20185) | 4280153..4280578 | + | 426 | WP_028700175.1 | hypothetical protein | - |
| L2Y89_RS20190 (L2Y89_20190) | 4280644..4280856 | + | 213 | WP_028700174.1 | hypothetical protein | - |
| L2Y89_RS20195 (L2Y89_20195) | 4280945..4281295 | + | 351 | WP_028700173.1 | hypothetical protein | - |
| L2Y89_RS20200 (L2Y89_20200) | 4281606..4281926 | + | 321 | WP_043287754.1 | hypothetical protein | - |
| L2Y89_RS20205 (L2Y89_20205) | 4281995..4282405 | + | 411 | WP_023660731.1 | hypothetical protein | - |
| L2Y89_RS20210 (L2Y89_20210) | 4282468..4283073 | + | 606 | WP_023660732.1 | DUF3275 family protein | - |
| L2Y89_RS20215 (L2Y89_20215) | 4283167..4283421 | + | 255 | WP_023660733.1 | hypothetical protein | - |
| L2Y89_RS20220 (L2Y89_20220) | 4283484..4284089 | + | 606 | WP_043287768.1 | hypothetical protein | - |
| L2Y89_RS20225 (L2Y89_20225) | 4284118..4285557 | + | 1440 | WP_023660735.1 | DUF6094 domain-containing protein | - |
| L2Y89_RS20230 (L2Y89_20230) | 4285655..4287904 | + | 2250 | WP_031324274.1 | DEAD/DEAH box helicase | - |
| L2Y89_RS20235 (L2Y89_20235) | 4288227..4288682 | - | 456 | WP_023660738.1 | glyoxalase superfamily protein | - |
| L2Y89_RS20240 (L2Y89_20240) | 4288916..4289161 | + | 246 | Protein_3972 | DUF4113 domain-containing protein | - |
| L2Y89_RS20245 (L2Y89_20245) | 4290098..4290796 | + | 699 | WP_031324277.1 | hypothetical protein | - |
| L2Y89_RS20250 (L2Y89_20250) | 4290807..4291565 | + | 759 | WP_055985437.1 | TIGR03759 family integrating conjugative element protein | - |
| L2Y89_RS20255 (L2Y89_20255) | 4291550..4292110 | + | 561 | WP_031324278.1 | hypothetical protein | VF |
| L2Y89_RS20260 (L2Y89_20260) | 4292161..4292637 | + | 477 | WP_031324279.1 | integrating conjugative element protein | - |
| L2Y89_RS20265 (L2Y89_20265) | 4292646..4292894 | + | 249 | WP_060500124.1 | hypothetical protein | - |
| L2Y89_RS20270 (L2Y89_20270) | 4292896..4295112 | + | 2217 | WP_023660741.1 | type IV conjugative transfer system coupling protein TraD | - |
| L2Y89_RS20275 (L2Y89_20275) | 4295123..4295872 | + | 750 | WP_023660742.1 | TIGR03747 family integrating conjugative element membrane protein | - |
| L2Y89_RS20280 (L2Y89_20280) | 4295884..4297353 | + | 1470 | WP_023660743.1 | UvrD-helicase domain-containing protein | - |
| L2Y89_RS20285 (L2Y89_20285) | 4297372..4297695 | + | 324 | WP_023660744.1 | hypothetical protein | - |
| L2Y89_RS20290 (L2Y89_20290) | 4298216..4298533 | + | 318 | WP_028690570.1 | RAQPRD family integrative conjugative element protein | - |
| L2Y89_RS20295 (L2Y89_20295) | 4298530..4298769 | + | 240 | WP_031324281.1 | TIGR03758 family integrating conjugative element protein | - |
| L2Y89_RS20300 (L2Y89_20300) | 4298830..4299135 | + | 306 | WP_225624753.1 | TIGR03745 family integrating conjugative element membrane protein | - |
| L2Y89_RS20305 (L2Y89_20305) | 4299149..4299532 | + | 384 | WP_023660748.1 | TIGR03750 family conjugal transfer protein | - |
| L2Y89_RS20310 (L2Y89_20310) | 4299541..4300191 | + | 651 | WP_023660749.1 | TIGR03746 family integrating conjugative element protein | - |
| L2Y89_RS20315 (L2Y89_20315) | 4300188..4301081 | + | 894 | WP_023660750.1 | TIGR03749 family integrating conjugative element protein | - |
| L2Y89_RS20320 (L2Y89_20320) | 4301062..4302561 | + | 1500 | WP_023660751.1 | TIGR03752 family integrating conjugative element protein | - |
| L2Y89_RS20325 (L2Y89_20325) | 4302539..4302988 | + | 450 | WP_023660752.1 | TIGR03751 family conjugal transfer lipoprotein | - |
| L2Y89_RS20330 (L2Y89_20330) | 4302988..4305981 | + | 2994 | WP_225624740.1 | conjugative transfer ATPase | - |
| L2Y89_RS20335 (L2Y89_20335) | 4305978..4306283 | + | 306 | WP_023660753.1 | hypothetical protein | - |
| L2Y89_RS20340 (L2Y89_20340) | 4306315..4306920 | + | 606 | WP_225624752.1 | thioredoxin domain-containing protein | - |
| L2Y89_RS20345 (L2Y89_20345) | 4306929..4307249 | + | 321 | WP_023660755.1 | hypothetical protein | - |
| L2Y89_RS20350 (L2Y89_20350) | 4307575..4307796 | - | 222 | WP_060495291.1 | hypothetical protein | - |
| L2Y89_RS20355 (L2Y89_20355) | 4307868..4308149 | - | 282 | WP_031325674.1 | hypothetical protein | - |
| L2Y89_RS20360 (L2Y89_20360) | 4308218..4308532 | - | 315 | Protein_3996 | Tn3 family transposase ISPsy42 | Transposase |
| L2Y89_RS20365 (L2Y89_20365) | 4308566..4308834 | - | 269 | Protein_3997 | Tn3 family transposase | - |
| L2Y89_RS28380 | 4308849..4310153 | - | 1305 | WP_023101947.1 | hypothetical protein | VF |
| L2Y89_RS20380 (L2Y89_20380) | 4310359..4311336 | - | 978 | WP_033902000.1 | IS5 family transposase ISPssy | Transposase |
| L2Y89_RS20385 (L2Y89_20385) | 4311529..4311600 | + | 72 | Protein_4000 | hypothetical protein | - |
| L2Y89_RS20390 (L2Y89_20390) | 4311675..4313354 | + | 1680 | WP_000179844.1 | hypothetical protein ; Integrase | Integrase |
| L2Y89_RS20395 (L2Y89_20395) | 4313357..4314265 | + | 909 | WP_003155746.1 | TniB family NTP-binding protein | - |
| L2Y89_RS20400 (L2Y89_20400) | 4314262..4315479 | + | 1218 | WP_006122485.1 | TniQ family protein | - |
| L2Y89_RS20405 (L2Y89_20405) | 4315541..4316164 | + | 624 | WP_003155741.1 | Tn3 family transposase TnpR_ISMex22 | Transposase |
| L2Y89_RS20410 (L2Y89_20410) | 4316327..4316881 | - | 555 | WP_003159191.1 | aminoglycoside N-acetyltransferase AAC(6')-Ib4 | - |
| L2Y89_RS20415 (L2Y89_20415) | 4317029..4317769 | - | 741 | WP_003159548.1 | Hydroxyacylglutathione hydrolase | ARG |
| L2Y89_RS20420 (L2Y89_20420) | 4317922..4318935 | + | 1014 | WP_000845048.1 | IS91 family transposase ISAzo26 | Transposase |
| L2Y89_RS20425 (L2Y89_20425) | 4320813..4321118 | + | 306 | WP_019819701.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| L2Y89_RS20430 (L2Y89_20430) | 4321099..4321434 | + | 336 | WP_001172026.1 | helix-turn-helix transcriptional regulator | Antitoxin Detail |
| L2Y89_RS20435 (L2Y89_20435) | 4321449..4321784 | + | 336 | WP_000741275.1 | hypothetical protein | - |
| L2Y89_RS20440 (L2Y89_20440) | 4321808..4322134 | + | 327 | WP_000091614.1 | hypothetical protein | - |
| L2Y89_RS20445 (L2Y89_20445) | 4322131..4322511 | + | 381 | WP_001054412.1 | hypothetical protein | - |
| L2Y89_RS20450 (L2Y89_20450) | 4322668..4323024 | + | 357 | WP_237144814.1 | hypothetical protein | VF |
| L2Y89_RS20455 (L2Y89_20455) | 4323108..4323977 | + | 870 | WP_237144306.1 | HD-GYP domain-containing protein | - |
| L2Y89_RS20460 (L2Y89_20460) | 4324307..4324726 | + | 420 | WP_023662957.1 | TIGR03757 family integrating conjugative element protein | - |
| L2Y89_RS20465 (L2Y89_20465) | 4324726..4325661 | + | 936 | WP_023662956.1 | TIGR03756 family integrating conjugative element protein | - |
| L2Y89_RS20470 (L2Y89_20470) | 4325681..4327042 | + | 1362 | WP_023662955.1 | integrating conjugative element protein | - |
| L2Y89_RS20475 (L2Y89_20475) | 4327045..4327401 | + | 357 | WP_023662954.1 | hypothetical protein | - |
| L2Y89_RS20480 (L2Y89_20480) | 4327398..4328939 | + | 1542 | WP_023662953.1 | conjugal transfer protein TraG N-terminal domain-containing protein | - |
| L2Y89_RS20485 (L2Y89_20485) | 4328988..4329314 | - | 327 | WP_023662952.1 | hypothetical protein | - |
| L2Y89_RS20490 (L2Y89_20490) | 4329427..4329705 | + | 279 | WP_009402065.1 | type II toxin-antitoxin system ParD family antitoxin | - |
| L2Y89_RS20495 (L2Y89_20495) | 4329714..4330067 | + | 354 | WP_023662951.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| L2Y89_RS20500 (L2Y89_20500) | 4330186..4330791 | + | 606 | WP_128637346.1 | hypothetical protein | - |
| L2Y89_RS20505 (L2Y89_20505) | 4330900..4332783 | + | 1884 | WP_023662950.1 | MobH family relaxase | - |
| L2Y89_RS20510 (L2Y89_20510) | 4332780..4334033 | + | 1254 | WP_023662949.1 | Tyrosine recombinase XerC ; Integrase | Integrase |
| L2Y89_RS20520 (L2Y89_20520) | 4334505..4335179 | - | 675 | WP_009684061.1 | 7-cyano-7-deazaguanine synthase QueC | - |
| L2Y89_RS20525 (L2Y89_20525) | 4335197..4335844 | - | 648 | WP_009684060.1 | 7-carboxy-7-deazaguanine synthase QueE | - |
| L2Y89_RS20530 (L2Y89_20530) | 4336013..4336816 | - | 804 | WP_029887417.1 | tol-pal system protein YbgF | - |
| L2Y89_RS20535 (L2Y89_20535) | 4336823..4337323 | - | 501 | WP_029887416.1 | peptidoglycan-associated lipoprotein Pal | - |
| L2Y89_RS20540 (L2Y89_20540) | 4337378..4338679 | - | 1302 | WP_009684057.1 | Tol-Pal system beta propeller repeat protein TolB | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|