MGE detailed information
MGE type: IScluster/Tn MGE length: 14298 bp
Accession: NZ_CP091147 Location: 57474..71771 Organism: Pseudomonas avellanae strain NCPPB 4222 Replicon: chromosome
Accession: NZ_CP091147 Location: 57474..71771 Organism: Pseudomonas avellanae strain NCPPB 4222 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| L2Y01_RS00260 (L2Y01_00260) | 52604..52792 | - | 189 | Protein_51 | hypothetical protein | - |
| L2Y01_RS00265 (L2Y01_00265) | 52783..53646 | - | 864 | WP_024419684.1 | type III effector | - |
| L2Y01_RS00270 (L2Y01_00270) | 53755..54405 | - | 651 | Protein_53 | ATP-binding protein | - |
| L2Y01_RS00275 (L2Y01_00275) | 54640..55203 | + | 564 | WP_005613213.1 | heteromeric transposase endonuclease subunit TnsA | - |
| L2Y01_RS00280 (L2Y01_00280) | 55203..57119 | + | 1917 | WP_005613211.1 | DDE-type integrase/transposase/recombinase | - |
| L2Y01_RS00285 (L2Y01_00285) | 57164..57316 | + | 153 | WP_231667334.1 | TniB family NTP-binding protein | - |
| L2Y01_RS00290 (L2Y01_00290) | 57474..58277 | - | 804 | WP_003417182.1 | IS21 family transposase ISPsy20 | Transposase |
| L2Y01_RS00295 (L2Y01_00295) | 58270..59769 | - | 1500 | WP_103356851.1 | IS21 family transposase ISPsy20 | Transposase |
| L2Y01_RS00300 (L2Y01_00300) | 59884..60363 | - | 480 | Protein_59 | type I restriction endonuclease subunit R | - |
| L2Y01_RS00305 (L2Y01_00305) | 60438..60812 | - | 375 | Protein_60 | IS91 family transposase IS801 | Transposase |
| L2Y01_RS00310 (L2Y01_00310) | 61132..61881 | + | 750 | WP_122212308.1 | IS5 family transposase ISPa67 | Transposase |
| L2Y01_RS00315 (L2Y01_00315) | 62263..62445 | + | 183 | WP_007253326.1 | type II toxin-antitoxin system HicA family toxin | Toxin Detail |
| L2Y01_RS00320 (L2Y01_00320) | 62478..62903 | + | 426 | WP_005622461.1 | type II toxin-antitoxin system HicB family antitoxin | Antitoxin Detail |
| L2Y01_RS00325 (L2Y01_00325) | 63207..63374 | - | 168 | WP_169338176.1 | hypothetical protein | - |
| L2Y01_RS00330 (L2Y01_00330) | 63428..63790 | + | 363 | WP_024421005.1 | Rap1a/Tai family immunity protein | - |
| L2Y01_RS00335 (L2Y01_00335) | 64261..64551 | - | 291 | WP_081591740.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| L2Y01_RS00340 (L2Y01_00340) | 64514..64777 | - | 264 | WP_024421039.1 | ribbon-helix-helix protein, CopG family | - |
| L2Y01_RS00345 (L2Y01_00345) | 65585..66650 | - | 1066 | Protein_68 | IS630 family transposase ISPsy32 | Transposase |
| L2Y01_RS00350 (L2Y01_00350) | 67214..67477 | - | 264 | WP_010212495.1 | hypothetical protein | - |
| L2Y01_RS00355 (L2Y01_00355) | 67540..68556 | + | 1017 | WP_249741625.1 | IS30 family transposase ISPsy38 | Transposase |
| L2Y01_RS28430 | 69016..69078 | - | 63 | Protein_71 | hypothetical protein | - |
| L2Y01_RS00365 (L2Y01_00365) | 69168..70241 | - | 1074 | WP_249741626.1 | RHS repeat domain-containing protein | - |
| L2Y01_RS00370 (L2Y01_00370) | 70346..70750 | - | 405 | WP_152644196.1 | hypothetical protein | - |
| L2Y01_RS00375 (L2Y01_00375) | 70755..71771 | - | 1017 | WP_005614760.1 | IS30 family transposase ISPsy38 | Transposase |
| L2Y01_RS00380 (L2Y01_00380) | 71806..72291 | - | 486 | WP_147477488.1 | hypothetical protein | - |
| L2Y01_RS00385 (L2Y01_00385) | 72863..73813 | - | 951 | WP_005613479.1 | LysR family transcriptional regulator | - |
| L2Y01_RS00390 (L2Y01_00390) | 73928..75433 | + | 1506 | WP_005613481.1 | choline-sulfatase | - |
| L2Y01_RS00395 (L2Y01_00395) | 75471..76397 | + | 927 | WP_005613483.1 | choline ABC transporter substrate-binding protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|