MGE detailed information
MGE type: IS/Tn MGE length: 1017 bp
Accession: NZ_CP091147 Location: 1911810..1912826 Organism: Pseudomonas avellanae strain NCPPB 4222 Replicon: chromosome
Accession: NZ_CP091147 Location: 1911810..1912826 Organism: Pseudomonas avellanae strain NCPPB 4222 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| L2Y01_RS08940 (L2Y01_08940) | 1907323..1908015 | - | 693 | WP_024420376.1 | tRNA (N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase TrmO | - |
| L2Y01_RS08945 (L2Y01_08945) | 1908029..1908490 | - | 462 | WP_004397572.1 | DUF1456 family protein | - |
| L2Y01_RS08950 (L2Y01_08950) | 1908573..1909283 | - | 711 | WP_004397570.1 | rRNA pseudouridine synthase | - |
| L2Y01_RS08955 (L2Y01_08955) | 1909377..1909817 | - | 441 | WP_005616045.1 | GNAT family N-acetyltransferase | - |
| L2Y01_RS08960 (L2Y01_08960) | 1909920..1911263 | - | 1344 | WP_004397566.1 | 30S ribosomal protein S12 methylthiotransferase RimO | - |
| L2Y01_RS08965 (L2Y01_08965) | 1911550..1911816 | + | 267 | WP_024421275.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| L2Y01_RS08970 (L2Y01_08970) | 1911810..1912826 | - | 1017 | WP_005614760.1 | IS30 family transposase ISPsy38 | Transposase |
| L2Y01_RS08975 (L2Y01_08975) | 1912934..1913587 | + | 654 | WP_024421027.1 | type III effector HopAZ1 | - |
| L2Y01_RS08980 (L2Y01_08980) | 1913605..1913871 | - | 267 | WP_235390788.1 | hypothetical protein | - |
| L2Y01_RS08985 (L2Y01_08985) | 1914233..1914544 | + | 312 | WP_007247668.1 | Arc family DNA-binding protein | Antitoxin Detail |
| L2Y01_RS08990 (L2Y01_08990) | 1914541..1914972 | + | 432 | WP_024420983.1 | type II toxin-antitoxin system VapC family toxin | Toxin Detail |
| L2Y01_RS08995 (L2Y01_08995) | 1915013..1915646 | + | 634 | Protein_1780 | recombinase family protein | - |
| L2Y01_RS09000 (L2Y01_09000) | 1915921..1916790 | + | 870 | WP_229687600.1 | AvrD family protein | - |
| L2Y01_RS28475 | 1916783..1916962 | + | 180 | WP_259645586.1 | AvrD family protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|