MGE detailed information
MGE type: Prophage MGE length: 21707 bp
Accession: NZ_CP091065 Location: 2048147..2069853 Organism: Escherichia coli strain DOC14 Replicon: chromosome
Accession: NZ_CP091065 Location: 2048147..2069853 Organism: Escherichia coli strain DOC14 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| L1123_RS09875 (2043398) | 2043398..2044108 | + | 711 | WP_001321287.1 | YnfC family lipoprotein | - |
| L1123_RS09880 (2044111) | 2044111..2044671 | - | 561 | WP_001138581.1 | spermidine N1-acetyltransferase | - |
| L1123_RS09885 (2044706) | 2044706..2045047 | - | 342 | WP_000705211.1 | DUF1283 family protein | - |
| L1123_RS09890 (2045182) | 2045182..2045508 | + | 327 | WP_000598292.1 | YnfA family protein | - |
| L1123_RS09895 (2045714) | 2045714..2046928 | + | 1215 | WP_001295394.1 | starvation-sensing protein RspA | - |
| L1123_RS09900 (2046940) | 2046940..2047959 | + | 1020 | WP_000836066.1 | Zn-dependent oxidoreductase | - |
| L1123_RS09905 (2048147) | 2048147..2049304 | - | 1158 | Protein_1936 | Putative defective protein IntQ ; Integrase | Integrase |
| L1123_RS09910 (2049318) | 2049318..2050013 | - | 696 | Protein_1937 | IS3 family transposase IS2 | Transposase |
| L1123_RS09915 (2050010) | 2050010..2050777 | - | 768 | Protein_1938 | exonuclease | - |
| L1123_RS09920 (2050870) | 2050870..2051061 | - | 192 | WP_001083297.1 | lysis protein YdfD | - |
| L1123_RS09925 (2051058) | 2051058..2051246 | - | 189 | WP_000854559.1 | cell division inhibition protein DicB | - |
| L1123_RS09930 (2051814) | 2051814..2052032 | - | 219 | WP_001171942.1 | protein YdfC | - |
| L1123_RS22495 (2052062) | 2052062..2052190 | - | 129 | WP_000344964.1 | protein YdfB | - |
| L1123_RS09935 (2052192) | 2052192..2052347 | - | 156 | WP_000379575.1 | DUF1391 family protein | - |
| L1123_RS09940 (2052514) | 2052514..2052921 | - | 408 | WP_000448564.1 | DNA-binding transcriptional dual regulator DicA | - |
| L1123_RS09945 (2053005) | 2053005..2053235 | + | 231 | WP_000920568.1 | dicB transcriptional regulator DicC | - |
| L1123_RS09950 (2053219) | 2053219..2053497 | + | 279 | Protein_1946 | hypothetical protein | - |
| L1123_RS09955 (2053532) | 2053532..2053681 | + | 150 | WP_011443592.1 | protein YdfW | - |
| L1123_RS09960 (2054118) | 2054118..2054450 | - | 333 | WP_001301033.1 | FlxA-like family protein | - |
| L1123_RS09965 (2054653) | 2054653..2054958 | - | 306 | WP_001326990.1 | protein YdfV | - |
| L1123_RS09970 (2054983) | 2054983..2055222 | + | 240 | WP_000534858.1 | type II toxin-antitoxin system antitoxin RelB | Antitoxin Detail |
| L1123_RS09975 (2055222) | 2055222..2055509 | + | 288 | WP_000323025.1 | type II toxin-antitoxin system mRNA interferase RelE | Toxin Detail |
| L1123_RS09980 (2055581) | 2055581..2055736 | + | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | - |
| L1123_RS09985 (2055953) | 2055953..2056204 | + | 252 | WP_000980994.1 | protein Rem | - |
| L1123_RS09990 (2056271) | 2056271..2056549 | + | 279 | WP_012304870.1 | hypothetical protein | - |
| L1123_RS09995 (2056551) | 2056551..2057600 | + | 1050 | WP_001393597.1 | DUF968 domain-containing protein | - |
| L1123_RS10000 (2057614) | 2057614..2058366 | + | 753 | WP_001047135.1 | antitermination protein | - |
| L1123_RS10005 (2058644) | 2058644..2058733 | - | 90 | WP_120795389.1 | hypothetical protein | - |
| L1123_RS10010 (2058788) | 2058788..2059000 | - | 213 | WP_000087756.1 | cold shock-like protein CspF | - |
| L1123_RS10015 (2059301) | 2059301..2059516 | + | 216 | WP_000066484.1 | cold shock-like protein CspB | - |
| L1123_RS10020 (2059880) | 2059880..2060050 | - | 171 | WP_211180497.1 | putative zinc-binding protein YnfU | - |
| L1123_RS10025 (2060270) | 2060270..2060485 | + | 216 | WP_000839590.1 | phage lysis protein EssD | - |
| L1123_RS10030 (2060490) | 2060490..2060801 | + | 312 | WP_000189916.1 | YdfR family protein | - |
| L1123_RS10035 (2060798) | 2060798..2061331 | + | 534 | WP_001092971.1 | lysozyme | - |
| L1123_RS10040 (2061328) | 2061328..2061825 | + | 498 | WP_001071769.1 | DUF2514 domain-containing protein | - |
| L1123_RS10045 (2062188) | 2062188..2062400 | + | 213 | WP_000066495.1 | cold shock protein CspI | - |
| L1123_RS10050 (2062411) | 2062411..2062599 | + | 189 | WP_071524604.1 | cold-shock protein | - |
| L1123_RS10055 (2062602) | 2062602..2062667 | + | 66 | WP_120795388.1 | small protein YnfR | - |
| L1123_RS10060 (2062746) | 2062746..2062901 | + | 156 | WP_001309517.1 | protein YnfN | - |
| L1123_RS10065 (2063073) | 2063073..2063246 | + | 174 | WP_001019606.1 | addiction module toxin, GnsA/GnsB family | - |
| L1123_RS10070 (2063398) | 2063398..2063808 | - | 411 | WP_000373090.1 | DUF1398 domain-containing protein | - |
| L1123_RS10075 (2063866) | 2063866..2064099 | - | 234 | WP_001368374.1 | YlcI/YnfO family protein | - |
| L1123_RS10080 (2064488) | 2064488..2065057 | + | 570 | WP_000453612.1 | DNA-packaging protein | - |
| L1123_RS10085 (2065008) | 2065008..2065970 | + | 963 | WP_001027733.1 | phage tail protein | - |
| L1123_RS10090 (2065970) | 2065970..2066545 | + | 576 | WP_000885611.1 | tail fiber assembly protein | - |
| L1123_RS10095 (2066643) | 2066643..2067233 | - | 591 | WP_000078177.1 | Tn3 family transposase TnpR_ISSba14 | Transposase |
| L1123_RS10100 (2067550) | 2067550..2067783 | - | 234 | WP_000836768.1 | cold shock protein YdfK | - |
| L1123_RS10105 (2067852) | 2067852..2067965 | - | 114 | WP_120795384.1 | YnaM/YnfT family protein | - |
| L1123_RS10110 (2068486) | 2068486..2069853 | + | 1368 | Protein_1978 | MHS family MFS transporter | - |
| L1123_RS10115 (2069942) | 2069942..2071402 | + | 1461 | WP_000527743.1 | mannitol dehydrogenase family protein | - |
| L1123_RS10120 (2071437) | 2071437..2071640 | - | 204 | WP_000214712.1 | putative selenium delivery protein YdfZ | - |
| L1123_RS10125 (2071817) | 2071817..2072503 | - | 687 | WP_000215549.1 | DNA-binding transcriptional regulator rspR | - |
| L1123_RS10130 (2072592) | 2072592..2073338 | - | 747 | WP_000636571.1 | bifunctional NADP-dependent 3-hydroxy acid dehydrogenase/3-hydroxypropionate dehydrogenase YdfG | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli K-12 strain ER3413 | Prophage | TA20026 | CP009789 | 1611431..1634475 | 0.002 | |
| Escherichia coli str. K-12 substr. W3110 | Prophage | TA21438 | NC_007779 | 1632716..1654422 | 0 | |
| Escherichia coli DH1 | Prophage | TA27404 | NC_017638 | 1615804..1634890 | 0.003 | |
| Escherichia coli str. K-12 substr. W3110 strain K-12 substr. ZK126 | Prophage | TA68425 | NZ_CP017979 | 1534772..1559021 | 0.002 | |
| Escherichia coli strain DH5alpha | Prophage | TA90479 | NZ_CP025520 | 488442..510148 | 0 |