MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 90212 bp
Accession: NZ_CP090963 Location: 1..90212 Organism: Edwardsiella piscicida strain CZ12001 Replicon: plasmid unnamed1
Accession: NZ_CP090963 Location: 1..90212 Organism: Edwardsiella piscicida strain CZ12001 Replicon: plasmid unnamed1
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| L1P06_RS17550 (L1P06_17550) | 416..2620 | - | 2205 | WP_236893443.1 | type IV conjugative transfer system coupling protein TraD | - |
| L1P06_RS17555 (L1P06_17555) | 2707..3249 | - | 543 | WP_236893444.1 | hypothetical protein | - |
| L1P06_RS17560 (L1P06_17560) | 3246..6098 | - | 2853 | WP_236893445.1 | conjugal transfer mating-pair stabilization protein TraG | - |
| L1P06_RS17565 (L1P06_17565) | 6098..7465 | - | 1368 | WP_097364770.1 | conjugal transfer pilus assembly protein TraH | - |
| L1P06_RS17570 (L1P06_17570) | 7462..7989 | - | 528 | WP_236893512.1 | type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB | - |
| L1P06_RS17575 (L1P06_17575) | 7982..8215 | - | 234 | WP_068872072.1 | type-F conjugative transfer system pilin chaperone TraQ | - |
| L1P06_RS17580 (L1P06_17580) | 8226..8978 | - | 753 | WP_236893447.1 | type-F conjugative transfer system pilin assembly protein TraF | - |
| L1P06_RS17585 (L1P06_17585) | 9009..10784 | - | 1776 | WP_236893514.1 | type-F conjugative transfer system mating-pair stabilization protein TraN | - |
| L1P06_RS17590 (L1P06_17590) | 10837..11502 | - | 666 | WP_236893448.1 | type-F conjugative transfer system pilin assembly protein TrbC | - |
| L1P06_RS17595 (L1P06_17595) | 11513..12523 | - | 1011 | WP_068872076.1 | conjugal transfer pilus assembly protein TraU | - |
| L1P06_RS17600 (L1P06_17600) | 12520..13155 | - | 636 | WP_236893449.1 | type-F conjugative transfer system protein TraW | - |
| L1P06_RS17605 (L1P06_17605) | 13157..13528 | - | 372 | WP_068872079.1 | type-F conjugative transfer system protein TrbI | - |
| L1P06_RS17610 (L1P06_17610) | 13525..16152 | - | 2628 | WP_236893451.1 | type IV secretion system protein TraC | - |
| L1P06_RS17615 (L1P06_17615) | 16281..16847 | - | 567 | WP_236893454.1 | type IV conjugative transfer system lipoprotein TraV | - |
| L1P06_RS17620 (L1P06_17620) | 16859..17071 | - | 213 | WP_236893456.1 | hypothetical protein | - |
| L1P06_RS17625 (L1P06_17625) | 17068..17436 | - | 369 | WP_236893459.1 | hypothetical protein | - |
| L1P06_RS17630 (L1P06_17630) | 17439..18839 | - | 1401 | WP_068872089.1 | F-type conjugal transfer pilus assembly protein TraB | - |
| L1P06_RS17635 (L1P06_17635) | 18836..19567 | - | 732 | WP_097364778.1 | type-F conjugative transfer system secretin TraK | - |
| L1P06_RS17640 (L1P06_17640) | 19554..20120 | - | 567 | WP_236893460.1 | type IV conjugative transfer system protein TraE | - |
| L1P06_RS17645 (L1P06_17645) | 20138..20443 | - | 306 | WP_035599570.1 | type IV conjugative transfer system protein TraL | - |
| L1P06_RS17650 (L1P06_17650) | 20459..20806 | - | 348 | WP_236893461.1 | type IV conjugative transfer system pilin TraA | - |
| L1P06_RS17655 (L1P06_17655) | 20878..21090 | - | 213 | WP_236893462.1 | TraY domain-containing protein | - |
| L1P06_RS17660 (L1P06_17660) | 21219..21917 | - | 699 | WP_236893463.1 | hypothetical protein | - |
| L1P06_RS17665 (L1P06_17665) | 22163..22903 | - | 741 | WP_236893465.1 | complement resistance protein TraT | - |
| L1P06_RS17670 (L1P06_17670) | 22960..23346 | - | 387 | WP_068872098.1 | conjugal transfer relaxosome DNA-binding protein TraM | - |
| L1P06_RS17675 (L1P06_17675) | 23867..24340 | + | 474 | WP_236893468.1 | hypothetical protein | VF |
| L1P06_RS17680 (L1P06_17680) | 24845..25750 | - | 906 | WP_236893469.1 | zincin-like metallopeptidase domain-containing protein | - |
| L1P06_RS17685 (L1P06_17685) | 26421..26789 | - | 369 | WP_097364782.1 | hypothetical protein | - |
| L1P06_RS17690 (L1P06_17690) | 27425..28153 | - | 729 | WP_236893471.1 | plasmid SOS inhibition protein A | - |
| L1P06_RS17695 (L1P06_17695) | 28150..28581 | - | 432 | WP_236893473.1 | conjugation system SOS inhibitor PsiB | - |
| L1P06_RS17700 (L1P06_17700) | 28626..30596 | - | 1971 | WP_236893475.1 | ParB/RepB/Spo0J family partition protein | - |
| L1P06_RS17705 (L1P06_17705) | 30661..30903 | - | 243 | WP_236893477.1 | DUF905 domain-containing protein | - |
| L1P06_RS17710 (L1P06_17710) | 30956..31501 | - | 546 | WP_236893479.1 | single-stranded DNA-binding protein | - |
| L1P06_RS17715 (L1P06_17715) | 31530..31691 | - | 162 | WP_236893481.1 | single-stranded DNA-binding protein | - |
| L1P06_RS17720 (L1P06_17720) | 32328..32891 | - | 564 | WP_236893483.1 | class I SAM-dependent methyltransferase | - |
| L1P06_RS17725 (L1P06_17725) | 32940..34286 | - | 1347 | WP_236893516.1 | DUF3560 domain-containing protein | - |
| L1P06_RS17730 (L1P06_17730) | 34374..34604 | - | 231 | WP_236893485.1 | DUF4496 domain-containing protein | - |
| L1P06_RS17735 (L1P06_17735) | 35500..35928 | - | 429 | WP_236893487.1 | antirestriction protein | - |
| L1P06_RS17740 (L1P06_17740) | 36376..36795 | - | 420 | WP_236893489.1 | DUF1380 family protein | - |
| L1P06_RS17745 (L1P06_17745) | 36853..37533 | - | 681 | WP_236893491.1 | DNA methylase | - |
| L1P06_RS17750 (L1P06_17750) | 37905..38240 | - | 336 | WP_236893493.1 | hypothetical protein | - |
| L1P06_RS17755 (L1P06_17755) | 38237..38458 | - | 222 | WP_236893494.1 | hypothetical protein | - |
| L1P06_RS17760 (L1P06_17760) | 38503..39438 | - | 936 | WP_236893496.1 | DUF1281 domain-containing protein | - |
| L1P06_RS17765 (L1P06_17765) | 39476..39736 | - | 261 | Protein_44 | hypothetical protein | - |
| L1P06_RS17770 (L1P06_17770) | 39904..40326 | + | 423 | WP_236893497.1 | translesion error-prone DNA polymerase V autoproteolytic subunit | - |
| L1P06_RS17775 (L1P06_17775) | 40326..41594 | + | 1269 | WP_236893499.1 | Y-family DNA polymerase | - |
| L1P06_RS17780 (L1P06_17780) | 41659..42045 | - | 387 | WP_236893501.1 | plasmid partitioning/stability family protein | - |
| L1P06_RS17785 (L1P06_17785) | 42051..43007 | - | 957 | WP_236893503.1 | plasmid segregation protein ParM | - |
| L1P06_RS17790 (L1P06_17790) | 43380..43607 | - | 228 | WP_236893505.1 | hypothetical protein | - |
| L1P06_RS17795 (L1P06_17795) | 43706..44344 | - | 639 | WP_236893506.1 | ParA family protein | - |
| L1P06_RS17800 (L1P06_17800) | 44728..44967 | + | 240 | WP_236893508.1 | hypothetical protein | - |
| L1P06_RS17805 (L1P06_17805) | 45018..45380 | + | 363 | WP_236893510.1 | hypothetical protein | - |
| L1P06_RS17810 (L1P06_17810) | 45456..46265 | - | 810 | WP_236893432.1 | site-specific integrase | - |
| L1P06_RS17815 (L1P06_17815) | 46262..46885 | - | 624 | WP_236893434.1 | DUF2913 family protein | - |
| L1P06_RS17820 (L1P06_17820) | 47008..47652 | - | 645 | WP_236893436.1 | hypothetical protein | - |
| L1P06_RS17825 (L1P06_17825) | 47787..48141 | - | 355 | Protein_56 | hypothetical protein | - |
| L1P06_RS17830 (L1P06_17830) | 48197..48427 | + | 231 | WP_001261276.1 | type II toxin-antitoxin system VapB family antitoxin | Antitoxin Detail |
| L1P06_RS17835 (L1P06_17835) | 48424..48840 | + | 417 | WP_000754566.1 | type II toxin-antitoxin system VapC family toxin | Toxin Detail |
| L1P06_RS17840 (L1P06_17840) | 48921..49625 | + | 705 | WP_001067858.1 | IS6 family transposase IS15DI | Transposase |
| L1P06_RS17845 (L1P06_17845) | 49678..49809 | - | 132 | Protein_60 | SMR family transporter | - |
| L1P06_RS17850 (L1P06_17850) | 49926..50764 | - | 839 | Protein_61 | Streptomycin 3''-adenylyltransferase | ARG |
| L1P06_RS17855 (L1P06_17855) | 50770..51060 | - | 291 | WP_001336345.1 | DUF1010 domain-containing protein | - |
| L1P06_RS17860 (L1P06_17860) | 51172..51669 | - | 498 | WP_001083725.1 | Dihydrofolate reductase | ARG |
| L1P06_RS17865 (L1P06_17865) | 51814..52827 | + | 1014 | WP_000845039.1 | IS91 family transposase ISAzo26 | Transposase |
| L1P06_RS17870 (L1P06_17870) | 53030..53380 | + | 351 | WP_000454193.1 | DUF3330 domain-containing protein | - |
| L1P06_RS17875 (L1P06_17875) | 53556..54116 | + | 561 | WP_001161490.1 | Tn3 family transposase TnpR_TnAs1 | Transposase |
| L1P06_RS17880 (L1P06_17880) | 54120..57086 | + | 2967 | WP_001138014.1 | Tn3 family transposase TnpA_TnAs1 | Transposase |
| L1P06_RS17885 (L1P06_17885) | 57144..57386 | + | 243 | WP_000844627.1 | transposase | - |
| L1P06_RS17890 (L1P06_17890) | 57418..58068 | - | 651 | WP_000164043.1 | tetracycline resistance transcriptional repressor TetR(A) | - |
| L1P06_RS17895 (L1P06_17895) | 58174..59373 | + | 1200 | WP_035601451.1 | Tetracycline resistance protein, class C | VF |
| L1P06_RS17900 (L1P06_17900) | 59405..60289 | - | 885 | WP_000058717.1 | EamA family transporter | - |
| L1P06_RS17905 (L1P06_17905) | 60427..60819 | - | 393 | WP_001351729.1 | isochorismatase family cysteine hydrolase | - |
| L1P06_RS17910 (L1P06_17910) | 60823..62574 | + | 1752 | Protein_73 | Tn3 family transposase TnpA_TnAs1 | Transposase |
| L1P06_RS17915 (L1P06_17915) | 62753..63298 | + | 546 | WP_001493763.1 | plasmid pRiA4b ORF-3 family protein | - |
| L1P06_RS17920 (L1P06_17920) | 63435..64007 | + | 573 | WP_001493762.1 | Tn3 family transposase TnpR_ISPa40 | Transposase |
| L1P06_RS17925 (L1P06_17925) | 64044..65435 | + | 1392 | WP_001493761.1 | ISKra4 family transposase ISKpn19 | Transposase |
| L1P06_RS17930 (L1P06_17930) | 65468..65896 | + | 429 | Protein_77 | Tn3 family transposase TnpR_ISMex22 | Transposase |
| L1P06_RS17935 (L1P06_17935) | 66215..66871 | - | 657 | WP_001516695.1 | Pentapeptide repeat protein | ARG |
| L1P06_RS17940 (L1P06_17940) | 67266..68299 | + | 1034 | Protein_79 | IS3 family transposase ISAs17 | Transposase |
| L1P06_RS17945 (L1P06_17945) | 68377..69081 | + | 705 | WP_001067858.1 | IS6 family transposase IS15DI | Transposase |
| L1P06_RS17950 (L1P06_17950) | 69135..69845 | + | 711 | Protein_81 | transcriptional repressor PifC | - |
| L1P06_RS17955 (L1P06_17955) | 69847..70716 | + | 870 | WP_068872224.1 | hypothetical protein | - |
| L1P06_RS17960 (L1P06_17960) | 70765..72336 | - | 1572 | WP_068872225.1 | AAA family ATPase | - |
| L1P06_RS17965 (L1P06_17965) | 72866..73813 | - | 948 | WP_068872226.1 | Recombination-promoting nuclease RpnA | VF |
| L1P06_RS17970 (L1P06_17970) | 74786..75721 | - | 936 | WP_236893517.1 | Replication protein | - |
| L1P06_RS17975 (L1P06_17975) | 76275..76841 | - | 567 | WP_236893438.1 | DUF2726 domain-containing protein | - |
| L1P06_RS17980 (L1P06_17980) | 77042..77662 | - | 621 | WP_236893440.1 | fertility inhibition protein FinO | - |
| L1P06_RS17985 (L1P06_17985) | 77677..78402 | - | 726 | WP_141112577.1 | type-F conjugative transfer system pilin acetylase TraX | - |
| L1P06_RS17990 (L1P06_17990) | 78485..83302 | - | 4818 | WP_236893518.1 | Multifunctional conjugation protein TraI | Relaxase |
| L1P06_RS17995 (L1P06_17995) | 83614..83889 | + | 276 | WP_001141270.1 | formaldehyde-responsive transcriptional repressor FrmR | - |
| L1P06_RS18000 (L1P06_18000) | 83920..85029 | + | 1110 | WP_000842086.1 | S-(hydroxymethyl)glutathione dehydrogenase | - |
| L1P06_RS18005 (L1P06_18005) | 85071..85469 | + | 399 | WP_000235177.1 | VOC family protein | - |
| L1P06_RS18010 (L1P06_18010) | 85535..86371 | + | 837 | WP_009652884.1 | S-formylglutathione hydrolase | - |
| L1P06_RS18015 (L1P06_18015) | 86399..87034 | - | 636 | WP_000470624.1 | Tn3 family transposase TnpR_TnEc1 | Transposase |
| L1P06_RS18020 (L1P06_18020) | 87202..90189 | + | 2988 | WP_034164963.1 | Tn3 family transposase TnpA_TnEc1 | Transposase |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|