MGE detailed information
MGE type: Prophage MGE length: 51520 bp
Accession: NZ_CP090915 Location: 992624..1044143 Organism: Staphylococcus epidermidis strain 45A5 Replicon: chromosome
Accession: NZ_CP090915 Location: 992624..1044143 Organism: Staphylococcus epidermidis strain 45A5 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| KB229_RS04795 (KB229_04795) | 988229..989452 | + | 1224 | WP_001829820.1 | ABC transporter permease | - |
| KB229_RS04800 (KB229_04800) | 989511..990134 | + | 624 | WP_002468833.1 | CadD family cadmium resistance transporter | - |
| KB229_RS04805 (KB229_04805) | 990691..991194 | - | 504 | WP_001829811.1 | signal transduction protein TRAP | - |
| KB229_RS04810 (KB229_04810) | 991487..992548 | + | 1062 | WP_161375607.1 | uroporphyrinogen decarboxylase | - |
| KB229_RS04815 (KB229_04815) | 992624..993547 | + | 924 | WP_234966400.1 | ferrochelatase | - |
| KB229_RS04820 (KB229_04820) | 993691..995088 | + | 1398 | WP_162152538.1 | protoporphyrinogen oxidase | - |
| KB229_RS04825 (KB229_04825) | 995224..995778 | + | 555 | WP_001832974.1 | alpha/beta hydrolase | - |
| KB229_RS04870 (KB229_04870) | 997066..997536 | - | 471 | Protein_921 | Tyrosine recombinase XerC ; Integrase | Integrase |
| KB229_RS04875 (KB229_04875) | 997642..998040 | - | 399 | Protein_922 | Tyrosine recombinase XerC ; Integrase | Integrase |
| KB229_RS04880 (KB229_04880) | 998095..999120 | - | 1026 | WP_234966402.1 | restriction endonuclease subunit S | - |
| KB229_RS04885 (KB229_04885) | 999107..1000981 | - | 1875 | WP_234966574.1 | N-6 DNA methylase | - |
| KB229_RS04890 (KB229_04890) | 1001136..1001600 | - | 465 | WP_234966404.1 | ImmA/IrrE family metallo-endopeptidase | Toxin Detail |
| KB229_RS04895 (KB229_04895) | 1001613..1001942 | - | 330 | WP_002439260.1 | helix-turn-helix transcriptional regulator | Antitoxin Detail |
| KB229_RS04900 (KB229_04900) | 1002136..1002375 | + | 240 | WP_234966406.1 | helix-turn-helix transcriptional regulator | - |
| KB229_RS04905 (KB229_04905) | 1002389..1002622 | + | 234 | WP_234966408.1 | DUF2829 domain-containing protein | - |
| KB229_RS04910 (KB229_04910) | 1002644..1002808 | + | 165 | WP_176746971.1 | hypothetical protein | - |
| KB229_RS04915 (KB229_04915) | 1002812..1003024 | + | 213 | WP_234966410.1 | DUF771 domain-containing protein | - |
| KB229_RS04920 (KB229_04920) | 1003037..1003213 | + | 177 | WP_234966412.1 | hypothetical protein | - |
| KB229_RS04925 (KB229_04925) | 1003277..1003513 | + | 237 | WP_039973868.1 | hypothetical protein | - |
| KB229_RS04930 (KB229_04930) | 1003506..1003991 | + | 486 | WP_234966414.1 | siphovirus Gp157 family protein | - |
| KB229_RS04935 (KB229_04935) | 1003992..1004693 | + | 702 | WP_234966416.1 | AAA family ATPase | - |
| KB229_RS04940 (KB229_04940) | 1004680..1006089 | + | 1410 | WP_234966418.1 | DEAD/DEAH box helicase | - |
| KB229_RS04945 (KB229_04945) | 1006105..1006650 | + | 546 | WP_234966420.1 | DUF669 domain-containing protein | - |
| KB229_RS04950 (KB229_04950) | 1006634..1008952 | + | 2319 | WP_234966429.1 | phage/plasmid primase, P4 family | - |
| KB229_RS04955 (KB229_04955) | 1009270..1009494 | + | 225 | WP_234966431.1 | hypothetical protein | - |
| KB229_RS04960 (KB229_04960) | 1009487..1009807 | + | 321 | WP_234966433.1 | VRR-NUC domain-containing protein | - |
| KB229_RS04965 (KB229_04965) | 1009825..1010202 | + | 378 | WP_234966435.1 | hypothetical protein | - |
| KB229_RS04970 (KB229_04970) | 1010199..1010390 | + | 192 | WP_234966575.1 | hypothetical protein | - |
| KB229_RS04975 (KB229_04975) | 1010391..1010750 | + | 360 | WP_032603690.1 | SA1788 family PVL leukocidin-associated protein | - |
| KB229_RS04980 (KB229_04980) | 1010797..1011477 | + | 681 | WP_234966437.1 | hypothetical protein | - |
| KB229_RS04985 (KB229_04985) | 1011497..1011760 | + | 264 | WP_234966439.1 | hypothetical protein | - |
| KB229_RS04990 (KB229_04990) | 1011750..1011968 | + | 219 | WP_234966441.1 | hypothetical protein | - |
| KB229_RS04995 (KB229_04995) | 1011969..1012286 | + | 318 | WP_234966443.1 | MazG-like family protein | - |
| KB229_RS05000 (KB229_05000) | 1012297..1012926 | + | 630 | WP_234966445.1 | hypothetical protein | - |
| KB229_RS05005 (KB229_05005) | 1012976..1013374 | + | 399 | WP_234966447.1 | hypothetical protein | - |
| KB229_RS05010 (KB229_05010) | 1013374..1013526 | + | 153 | WP_234966449.1 | DUF1381 domain-containing protein | - |
| KB229_RS05015 (KB229_05015) | 1013519..1013677 | + | 159 | Protein_950 | transcriptional regulator | - |
| KB229_RS05020 (KB229_05020) | 1013784..1014203 | + | 420 | WP_021298939.1 | phage transcriptional regulator, RinA family | - |
| KB229_RS05025 (KB229_05025) | 1014214..1014480 | + | 267 | WP_234966451.1 | hypothetical protein | - |
| KB229_RS05030 (KB229_05030) | 1014674..1015102 | + | 429 | WP_234966453.1 | DUF4050 domain-containing protein | - |
| KB229_RS05035 (KB229_05035) | 1015089..1016369 | + | 1281 | WP_234966455.1 | PBSX family phage terminase large subunit | - |
| KB229_RS05040 (KB229_05040) | 1016382..1017911 | + | 1530 | WP_234966457.1 | phage portal protein | - |
| KB229_RS05045 (KB229_05045) | 1017918..1018868 | + | 951 | WP_234966459.1 | minor capsid protein | - |
| KB229_RS05050 (KB229_05050) | 1018888..1019433 | + | 546 | WP_234966461.1 | hypothetical protein | - |
| KB229_RS05055 (KB229_05055) | 1019426..1019569 | + | 144 | WP_202596173.1 | hypothetical protein | - |
| KB229_RS05060 (KB229_05060) | 1019823..1020428 | + | 606 | WP_234966463.1 | DUF4355 domain-containing protein | - |
| KB229_RS05065 (KB229_05065) | 1020444..1021373 | + | 930 | WP_232140083.1 | phage major capsid protein | - |
| KB229_RS05070 (KB229_05070) | 1021395..1021664 | + | 270 | WP_234966465.1 | hypothetical protein | - |
| KB229_RS05075 (KB229_05075) | 1021666..1021995 | + | 330 | WP_234966467.1 | phage head-tail connector protein | - |
| KB229_RS05080 (KB229_05080) | 1021992..1022294 | + | 303 | WP_021298915.1 | hypothetical protein | - |
| KB229_RS05085 (KB229_05085) | 1022294..1022656 | + | 363 | WP_234966469.1 | HK97 gp10 family phage protein | - |
| KB229_RS05090 (KB229_05090) | 1022656..1023045 | + | 390 | WP_126721105.1 | hypothetical protein | - |
| KB229_RS05095 (KB229_05095) | 1023088..1023645 | + | 558 | WP_234966471.1 | phage major tail protein, TP901-1 family | - |
| KB229_RS05100 (KB229_05100) | 1023710..1024069 | + | 360 | WP_002493371.1 | tail assembly chaperone | - |
| KB229_RS05105 (KB229_05105) | 1024114..1024458 | + | 345 | WP_234966473.1 | hypothetical protein | - |
| KB229_RS05110 (KB229_05110) | 1024473..1028324 | + | 3852 | WP_234966474.1 | phage tail protein | - |
| KB229_RS05115 (KB229_05115) | 1028336..1029292 | + | 957 | WP_234966475.1 | phage tail family protein | - |
| KB229_RS05120 (KB229_05120) | 1029304..1030764 | + | 1461 | WP_234966476.1 | phage tail protein | - |
| KB229_RS05125 (KB229_05125) | 1030767..1032653 | + | 1887 | Protein_972 | M14 family metallopeptidase | - |
| KB229_RS05130 (KB229_05130) | 1032666..1033853 | + | 1188 | WP_234966477.1 | hypothetical protein | - |
| KB229_RS05135 (KB229_05135) | 1033867..1034289 | + | 423 | WP_139062393.1 | hypothetical protein | - |
| KB229_RS05140 (KB229_05140) | 1034270..1034668 | + | 399 | WP_234966478.1 | hypothetical protein | - |
| KB229_RS05145 (KB229_05145) | 1035149..1036846 | + | 1698 | WP_234966479.1 | hypothetical protein | VF |
| KB229_RS05150 (KB229_05150) | 1036899..1038557 | + | 1659 | WP_234966480.1 | BppU family phage baseplate upper protein | - |
| KB229_RS05155 (KB229_05155) | 1038569..1038904 | + | 336 | WP_234966481.1 | hypothetical protein | - |
| KB229_RS05160 (KB229_05160) | 1038897..1039043 | + | 147 | Protein_979 | XkdX family protein | - |
| KB229_RS05165 (KB229_05165) | 1039104..1039514 | + | 411 | WP_234966482.1 | phage holin | - |
| KB229_RS05170 (KB229_05170) | 1039489..1040952 | + | 1464 | WP_234966484.1 | hypothetical protein | VF |
| KB229_RS05175 (KB229_05175) | 1041414..1042103 | + | 690 | WP_234966486.1 | hypothetical protein | - |
| KB229_RS05180 (KB229_05180) | 1042614..1042785 | - | 172 | Protein_983 | tyrosine-type recombinase/integrase | - |
| KB229_RS05185 (KB229_05185) | 1043032..1043604 | - | 573 | WP_001829812.1 | hypothetical protein | - |
| KB229_RS05190 (KB229_05190) | 1043702..1043923 | - | 222 | WP_001829852.1 | hypothetical protein | - |
| KB229_RS05195 (KB229_05195) | 1043892..1044143 | - | 252 | WP_001829835.1 | hypothetical protein | - |
| KB229_RS05200 (KB229_05200) | 1044801..1046225 | + | 1425 | WP_145380995.1 | o-succinylbenzoate--CoA ligase | - |
| KB229_RS05205 (KB229_05205) | 1046215..1047216 | + | 1002 | WP_001829851.1 | o-succinylbenzoate synthase | - |
| KB229_RS05210 (KB229_05210) | 1047213..1047461 | - | 249 | WP_002457867.1 | membrane protein insertion efficiency factor YidD | - |
| KB229_RS05215 (KB229_05215) | 1047532..1047999 | + | 468 | WP_001829813.1 | nucleoside triphosphatase YtkD | - |
| KB229_RS05220 (KB229_05220) | 1047986..1048771 | + | 786 | WP_080044590.1 | prolyl oligopeptidase family serine peptidase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|