MGE detailed information
MGE type: Genomic_island MGE length: 45474 bp
Accession: NZ_CP090889 Location: 964687..1010160 Organism: Streptococcus pneumoniae strain CH2439 Replicon: chromosome
Accession: NZ_CP090889 Location: 964687..1010160 Organism: Streptococcus pneumoniae strain CH2439 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| L1A13_RS04960 (L1A13_04960) | 960582..961196 | + | 615 | WP_000476372.1 | cell wall hydrolase Pmp23 | - |
| L1A13_RS04965 (L1A13_04965) | 961270..962244 | + | 975 | WP_001227738.1 | DUF1002 domain-containing protein | - |
| L1A13_RS04970 (L1A13_04970) | 962318..963949 | + | 1632 | WP_000914588.1 | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | - |
| L1A13_RS04975 (L1A13_04975) | 964163..964441 | + | 279 | WP_000710807.1 | hypothetical protein | - |
| L1A13_RS04980 (L1A13_04980) | 964687..964905 | + | 219 | WP_001207345.1 | helix-turn-helix transcriptional regulator | - |
| L1A13_RS04985 (L1A13_04985) | 965298..966323 | + | 1026 | WP_000790743.1 | ABC transporter substrate-binding protein | - |
| L1A13_RS04990 (L1A13_04990) | 966313..967320 | + | 1008 | WP_001244693.1 | Ferric enterobactin transport system permease protein FepD | VF |
| L1A13_RS04995 (L1A13_04995) | 967320..968327 | + | 1008 | WP_001180357.1 | putative siderophore transport system permease protein YfhA | VF |
| L1A13_RS05000 (L1A13_05000) | 968327..969121 | + | 795 | WP_000677518.1 | putative siderophore transport system ATP-binding protein YusV | VF |
| L1A13_RS05005 (L1A13_05005) | 969272..969456 | + | 185 | Protein_980 | IS3 family transposase | - |
| L1A13_RS05010 (L1A13_05010) | 969575..969898 | + | 324 | WP_229294054.1 | restriction endonuclease subunit S | - |
| L1A13_RS05015 (L1A13_05015) | 969879..970178 | + | 300 | Protein_982 | hypothetical protein | - |
| L1A13_RS05020 (L1A13_05020) | 970863..971024 | + | 162 | WP_000368174.1 | hypothetical protein | - |
| L1A13_RS05025 (L1A13_05025) | 971116..972794 | + | 1679 | Protein_984 | hypothetical protein ; Integrase | Integrase |
| L1A13_RS05030 (L1A13_05030) | 973062..973628 | + | 567 | WP_000234983.1 | hypothetical protein | - |
| L1A13_RS05035 (L1A13_05035) | 973950..974138 | + | 189 | WP_000179769.1 | hypothetical protein | - |
| L1A13_RS05040 (L1A13_05040) | 974200..974958 | + | 759 | WP_000262016.1 | ATP-grasp domain-containing protein | - |
| L1A13_RS05045 (L1A13_05045) | 975016..975870 | + | 855 | WP_000900019.1 | ADP-ribosylglycohydrolase family protein | - |
| L1A13_RS05050 (L1A13_05050) | 975982..976866 | + | 885 | WP_000710115.1 | diacylglycerol kinase family lipid kinase | - |
| L1A13_RS05055 (L1A13_05055) | 977029..978768 | + | 1740 | WP_000423464.1 | glycoside hydrolase family 13 protein | - |
| L1A13_RS05060 (L1A13_05060) | 979043..979498 | + | 456 | WP_000500478.1 | hypothetical protein | - |
| L1A13_RS05065 (L1A13_05065) | 979943..980419 | + | 477 | WP_000579602.1 | type II toxin-antitoxin system antitoxin PezA | Antitoxin Detail |
| L1A13_RS05070 (L1A13_05070) | 980419..981180 | + | 762 | WP_000405368.1 | type II toxin-antitoxin system toxin PezT | Toxin Detail |
| L1A13_RS05075 (L1A13_05075) | 981208..982365 | + | 1158 | WP_001213951.1 | hypothetical protein | - |
| L1A13_RS05080 (L1A13_05080) | 983197..983556 | + | 360 | WP_000529545.1 | SAG1252 family conjugative relaxosome accessory protein | - |
| L1A13_RS05085 (L1A13_05085) | 983566..983931 | + | 366 | WP_000263039.1 | plasmid mobilization relaxosome protein MobC | - |
| L1A13_RS05090 (L1A13_05090) | 983918..985768 | + | 1851 | Protein_997 | SAG1250 family conjugative relaxase | - |
| L1A13_RS05095 (L1A13_05095) | 986041..987006 | + | 966 | WP_000974692.1 | D-alanine--D-alanine ligase | - |
| L1A13_RS05100 (L1A13_05100) | 987072..988280 | + | 1209 | WP_000691719.1 | enolase | - |
| L1A13_RS05105 (L1A13_05105) | 988273..989166 | + | 894 | WP_000368611.1 | aminotransferase class IV | - |
| L1A13_RS05110 (L1A13_05110) | 989163..989975 | + | 813 | WP_000588707.1 | 1-deoxy-D-xylulose-5-phosphate synthase N-terminal domain-containing protein | - |
| L1A13_RS05115 (L1A13_05115) | 989972..990889 | + | 918 | WP_001232538.1 | serine hydroxymethyltransferase | - |
| L1A13_RS05120 (L1A13_05120) | 990855..992063 | + | 1209 | WP_000282560.1 | aminotransferase class III-fold pyridoxal phosphate-dependent enzyme | - |
| L1A13_RS05125 (L1A13_05125) | 992053..992847 | + | 795 | WP_000351847.1 | nucleoside-diphosphate kinase | - |
| L1A13_RS05130 (L1A13_05130) | 992850..994034 | + | 1185 | WP_000239146.1 | histone-lysine N-methyltransferase | - |
| L1A13_RS05135 (L1A13_05135) | 993994..995355 | + | 1362 | WP_000932706.1 | hypothetical protein | - |
| L1A13_RS05140 (L1A13_05140) | 995414..996289 | + | 876 | WP_001809188.1 | isocitrate lyase/phosphoenolpyruvate mutase family protein | - |
| L1A13_RS05145 (L1A13_05145) | 996279..997376 | + | 1098 | WP_000836759.1 | thiamine pyrophosphate-dependent enzyme | - |
| L1A13_RS05150 (L1A13_05150) | 997378..998169 | + | 792 | WP_001809189.1 | seryl-tRNA synthetase | - |
| L1A13_RS05155 (L1A13_05155) | 998169..999218 | + | 1050 | WP_001231246.1 | nucleotidyltransferase family protein | - |
| L1A13_RS05160 (L1A13_05160) | 999345..999584 | + | 240 | WP_000872900.1 | phosphopantetheine-binding protein | - |
| L1A13_RS05165 (L1A13_05165) | 999821..1001191 | + | 1371 | WP_224782086.1 | hypothetical protein | - |
| L1A13_RS05170 (L1A13_05170) | 1001599..1002591 | + | 993 | WP_001240822.1 | ABC transporter ATP-binding protein NatA | VF |
| L1A13_RS05175 (L1A13_05175) | 1002593..1003411 | + | 819 | WP_000240144.1 | ABC-2 family transporter protein | - |
| L1A13_RS05180 (L1A13_05180) | 1003413..1004197 | + | 785 | Protein_1015 | ABC transporter permease | - |
| L1A13_RS05185 (L1A13_05185) | 1004285..1005296 | + | 1012 | Protein_1016 | family 1 glycosylhydrolase | - |
| L1A13_RS05190 (L1A13_05190) | 1005412..1006290 | + | 879 | Protein_1017 | aldose 1-epimerase family protein | - |
| L1A13_RS05195 (L1A13_05195) | 1006538..1006762 | + | 225 | WP_000284846.1 | helix-turn-helix transcriptional regulator | - |
| L1A13_RS05200 (L1A13_05200) | 1006897..1007058 | + | 162 | WP_001838438.1 | hypothetical protein | - |
| L1A13_RS05205 (L1A13_05205) | 1007167..1008939 | + | 1773 | Protein_1020 | recombinase family protein | - |
| L1A13_RS05210 (L1A13_05210) | 1009023..1009631 | + | 609 | WP_000662936.1 | Type 1 glutamine amidotransferase-like domain-containing protein | - |
| L1A13_RS05215 (L1A13_05215) | 1009738..1010142 | + | 405 | Protein_1022 | phosphotransferase | - |
| L1A13_RS05220 (L1A13_05220) | 1010265..1010575 | + | 311 | Protein_1023 | transposase family protein | - |
| L1A13_RS05225 (L1A13_05225) | 1010719..1011948 | + | 1230 | WP_000703361.1 | FtsW/RodA/SpoVE family cell cycle protein | - |
| L1A13_RS05230 (L1A13_05230) | 1011968..1014664 | + | 2697 | WP_000058181.1 | phosphoenolpyruvate carboxylase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|