MGE detailed information
MGE type: Prophage MGE length: 62103 bp
Accession: NZ_CP090838 Location: 2644845..2706947 Organism: Bacillus amyloliquefaciens strain TL106 Replicon: chromosome
Accession: NZ_CP090838 Location: 2644845..2706947 Organism: Bacillus amyloliquefaciens strain TL106 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LT978_RS12670 (LT978_12665) | 2640068..2641165 | - | 1098 | WP_014304868.1 | dipeptide epimerase | - |
| LT978_RS12675 (LT978_12670) | 2641172..2642119 | - | 948 | WP_169539325.1 | LD-carboxypeptidase | - |
| LT978_RS12680 (LT978_12675) | 2642195..2643814 | - | 1620 | WP_003154780.1 | peptide ABC transporter substrate-binding protein | - |
| LT978_RS12685 (LT978_12680) | 2643811..2644839 | - | 1029 | WP_014304865.1 | ABC transporter ATP-binding protein | - |
| LT978_RS12690 (LT978_12685) | 2644845..2645792 | - | 948 | WP_139890279.1 | ABC transporter permease | - |
| LT978_RS12695 (LT978_12690) | 2645798..2646724 | - | 927 | WP_044053133.1 | ABC transporter permease | - |
| LT978_RS12700 (LT978_12695) | 2646739..2647563 | - | 825 | WP_007407248.1 | M55 family metallopeptidase | - |
| LT978_RS12705 (LT978_12700) | 2647719..2649278 | - | 1560 | WP_139890280.1 | MFS transporter | - |
| LT978_RS12710 (LT978_12705) | 2649567..2650916 | + | 1350 | WP_158332853.1 | hypothetical protein | VF |
| LT978_RS12715 (LT978_12710) | 2651016..2651192 | + | 177 | WP_003154788.1 | hypothetical protein | - |
| LT978_RS12720 (LT978_12715) | 2651279..2652250 | - | 972 | WP_003154790.1 | Undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase | VF |
| LT978_RS12725 (LT978_12720) | 2652262..2654403 | - | 2142 | WP_252616852.1 | glycosyltransferase family 39 protein | - |
| LT978_RS12730 (LT978_12725) | 2654588..2655538 | - | 951 | WP_015388352.1 | ring-cleaving dioxygenase | - |
| LT978_RS12735 (LT978_12730) | 2655861..2657177 | + | 1317 | WP_003154801.1 | amino acid permease | - |
| LT978_RS12740 (LT978_12735) | 2657463..2658080 | + | 618 | WP_003154804.1 | DUF47 domain-containing protein | - |
| LT978_RS12745 (LT978_12740) | 2658093..2659091 | + | 999 | WP_003154805.1 | inorganic phosphate transporter | - |
| LT978_RS12750 (LT978_12745) | 2659195..2659941 | + | 747 | WP_025851786.1 | type II toxin-antitoxin system SpoIISA family toxin | Toxin Detail |
| LT978_RS12755 (LT978_12750) | 2659942..2660112 | + | 171 | WP_003154807.1 | type II toxin-antitoxin system SpoIISB family antitoxin | Antitoxin Detail |
| LT978_RS12760 (LT978_12755) | 2660209..2660334 | + | 126 | WP_003154809.1 | hypothetical protein | - |
| LT978_RS12765 (LT978_12760) | 2660370..2661248 | - | 879 | WP_014304858.1 | hypothetical protein | VF |
| LT978_RS12770 (LT978_12765) | 2661262..2661525 | - | 264 | WP_003154813.1 | phage holin | - |
| LT978_RS12775 (LT978_12770) | 2661539..2661802 | - | 264 | WP_003154815.1 | hemolysin XhlA family protein | - |
| LT978_RS12780 (LT978_12775) | 2661854..2662615 | - | 762 | WP_139890281.1 | phage portal protein | - |
| LT978_RS12785 (LT978_12780) | 2662672..2662869 | - | 198 | WP_003154819.1 | XkdX family protein | - |
| LT978_RS12790 (LT978_12785) | 2662875..2663246 | - | 372 | WP_003154820.1 | XkdW family protein | - |
| LT978_RS12795 (LT978_12790) | 2663259..2664890 | - | 1632 | WP_139890282.1 | pyocin knob domain-containing protein | - |
| LT978_RS12800 (LT978_12795) | 2664893..2665165 | - | 273 | WP_014304854.1 | hypothetical protein | - |
| LT978_RS12805 (LT978_12800) | 2665162..2665740 | - | 579 | WP_003154823.1 | YmfQ family protein | - |
| LT978_RS12810 (LT978_12805) | 2665724..2666770 | - | 1047 | WP_003154824.1 | baseplate J/gp47 family protein | - |
| LT978_RS12815 (LT978_12810) | 2666763..2667188 | - | 426 | WP_139890283.1 | DUF2634 domain-containing protein | - |
| LT978_RS12820 (LT978_12815) | 2667292..2667558 | - | 267 | WP_007610818.1 | DUF2577 family protein | - |
| LT978_RS12825 (LT978_12820) | 2667558..2668535 | - | 978 | WP_003154829.1 | hypothetical protein | - |
| LT978_RS12830 (LT978_12825) | 2668549..2669208 | - | 660 | WP_007610816.1 | LysM peptidoglycan-binding domain-containing protein | - |
| LT978_RS12835 (LT978_12830) | 2669201..2674162 | - | 4962 | WP_209163306.1 | transglycosylase SLT domain-containing protein | - |
| LT978_RS12840 (LT978_12835) | 2674150..2674302 | - | 153 | WP_015239684.1 | hypothetical protein | - |
| LT978_RS12845 (LT978_12840) | 2674344..2674790 | - | 447 | WP_003154836.1 | phage portal protein | - |
| LT978_RS12850 (LT978_12845) | 2674867..2675310 | - | 444 | WP_003154837.1 | phage tail tube protein | - |
| LT978_RS12855 (LT978_12850) | 2675312..2676709 | - | 1398 | WP_003154838.1 | phage tail sheath family protein | - |
| LT978_RS12860 (LT978_12855) | 2676709..2676918 | - | 210 | WP_139890285.1 | hypothetical protein | - |
| LT978_RS12865 (LT978_12860) | 2676915..2677361 | - | 447 | WP_014304848.1 | hypothetical protein | - |
| LT978_RS12870 (LT978_12865) | 2677358..2677861 | - | 504 | WP_014304847.1 | HK97 gp10 family phage protein | - |
| LT978_RS12875 (LT978_12870) | 2677858..2678214 | - | 357 | WP_003154844.1 | DUF3599 family protein | - |
| LT978_RS12880 (LT978_12875) | 2678211..2678594 | - | 384 | WP_109567440.1 | DUF3199 family protein | - |
| LT978_RS12885 (LT978_12880) | 2678611..2679546 | - | 936 | WP_003154848.1 | phage major capsid protein | - |
| LT978_RS12890 (LT978_12885) | 2679573..2680421 | - | 849 | WP_014304846.1 | XkdF-like putative serine protease domain-containing protein | - |
| LT978_RS12895 (LT978_12890) | 2680453..2681832 | - | 1380 | WP_099762611.1 | phage portal protein | - |
| LT978_RS12900 (LT978_12895) | 2681881..2683179 | - | 1299 | WP_024085188.1 | PBSX family phage terminase large subunit | - |
| LT978_RS12905 (LT978_12900) | 2683176..2683973 | - | 798 | WP_139890286.1 | terminase small subunit | - |
| LT978_RS12910 (LT978_12905) | 2684086..2684598 | - | 513 | WP_003154857.1 | sigma-70 family RNA polymerase sigma factor | - |
| LT978_RS12915 (LT978_12910) | 2684711..2684914 | - | 204 | WP_003154859.1 | XtrA/YqaO family protein | - |
| LT978_RS12920 (LT978_12915) | 2684904..2685245 | - | 342 | WP_046559510.1 | hypothetical protein | - |
| LT978_RS12925 (LT978_12920) | 2685343..2685510 | - | 168 | WP_003154863.1 | hypothetical protein | - |
| LT978_RS12930 (LT978_12925) | 2685510..2686310 | - | 801 | WP_139890287.1 | IS21 family transposase ISPa36 | Transposase |
| LT978_RS12935 (LT978_12930) | 2686210..2687037 | - | 828 | WP_060657684.1 | hypothetical protein | - |
| LT978_RS12940 (LT978_12935) | 2687027..2687206 | - | 180 | WP_003154869.1 | hypothetical protein | - |
| LT978_RS12945 (LT978_12940) | 2687398..2687736 | + | 339 | WP_003154871.1 | HTH-type transcriptional regulator Xre | - |
| LT978_RS12950 (LT978_12945) | 2687885..2688475 | + | 591 | WP_003154873.1 | ImmA/IrrE family metallo-endopeptidase | - |
| LT978_RS12955 (LT978_12950) | 2688491..2688640 | - | 150 | WP_162918038.1 | hypothetical protein | - |
| LT978_RS12960 (LT978_12955) | 2688630..2689235 | - | 606 | WP_003154876.1 | poly-gamma-glutamate hydrolase family protein | - |
| LT978_RS12965 (LT978_12960) | 2689345..2689722 | + | 378 | WP_139890288.1 | PH domain-containing protein | - |
| LT978_RS12970 (LT978_12965) | 2689760..2690713 | - | 954 | WP_139890289.1 | hypothetical protein | VF |
| LT978_RS12975 (LT978_12970) | 2690856..2690990 | - | 135 | WP_003154881.1 | PhrA family phosphatase inhibitor | - |
| LT978_RS12980 (LT978_12975) | 2690980..2692116 | - | 1137 | WP_087920760.1 | tetratricopeptide repeat protein | - |
| LT978_RS12985 (LT978_12980) | 2692322..2692789 | + | 468 | WP_139890290.1 | DinB family protein | - |
| LT978_RS12990 (LT978_12985) | 2692938..2693702 | + | 765 | WP_003154887.1 | sulfite exporter TauE/SafE family protein | - |
| LT978_RS12995 (LT978_12990) | 2693749..2696634 | - | 2886 | WP_069448679.1 | type 2 lanthipeptide synthetase LanM family protein | - |
| LT978_RS13000 (LT978_12995) | 2696723..2696899 | - | 177 | WP_017417596.1 | class II lanthipeptide, LchA2/BrtA2 family | - |
| LT978_RS13005 (LT978_13000) | 2696936..2697112 | - | 177 | WP_017417595.1 | class II lanthipeptide, LchA2/BrtA2 family | - |
| LT978_RS13010 (LT978_13005) | 2697319..2699466 | - | 2148 | WP_139890291.1 | peptidase domain-containing ABC transporter | - |
| LT978_RS13015 (LT978_13010) | 2699456..2702638 | - | 3183 | WP_139890292.1 | type 2 lanthipeptide synthetase LanM family protein | - |
| LT978_RS13020 (LT978_13015) | 2702723..2702905 | - | 183 | WP_003154891.1 | plantaricin C family lantibiotic | - |
| LT978_RS13025 (LT978_13020) | 2703098..2703763 | - | 666 | WP_003154892.1 | response regulator transcription factor | - |
| LT978_RS13030 (LT978_13025) | 2703775..2705025 | - | 1251 | WP_003154893.1 | ATP-binding protein | - |
| LT978_RS13035 (LT978_13030) | 2705091..2705282 | - | 192 | WP_003154894.1 | hypothetical protein | - |
| LT978_RS13040 (LT978_13035) | 2705300..2706031 | - | 732 | WP_003154895.1 | ABC transporter permease | - |
| LT978_RS13045 (LT978_13040) | 2706012..2706947 | - | 936 | WP_052585736.1 | Vitamin B12 import ATP-binding protein BtuD | VF |
| LT978_RS13050 (LT978_13045) | 2707067..2708425 | - | 1359 | WP_003154898.1 | HAMP domain-containing sensor histidine kinase | - |
| LT978_RS13055 (LT978_13050) | 2708422..2709093 | - | 672 | WP_003154900.1 | response regulator transcription factor | - |
| LT978_RS13060 (LT978_13055) | 2709277..2710770 | - | 1494 | WP_041481959.1 | altronate dehydratase family protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|